Rmu_sc0000222.1_g000003

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000222.1
OG0020707
Physical Location & Seq
Forward (+)
14950 .. 17770
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000222.1_g000003.1.cds

Sequence Viewer

Length: 1188 bp
atgatcagagccgatcattttaaccgtgacccaaagaaagggttggagttcctccaaggaactcatctcttgcctgataaacttgatcctcaaagtgtggcatgcttttttaggtatacaagtgggctagacaagaatcttgttgtggatttcttgggaaatcatgacgagttttgtgttcaagttcttcacaaatttgctggtacctttgatttccaagatatgaatttggatactacactccgccttttcttggagacttttcgtttgcctggagaatcacaaaagatacaaagggttcttgaagcattctcagagatatactacgagcaatcacctctaattctagcaaacaaggatgttgctcttctgttatcatattcaatcataatgcttaatacagatcagcacaatgttcaggtgaagaagaagatgacagaggaggatttcattcggaataatagacacatcaatggaggcaatgatctacctcgagatttcctgacagagctttatcactcaatatgcaagaatgagattcgcactactccagaacaaggtgctggttatcctgagatgaccccaagccggtggattgatttgatgcacaaatctaagaaaaatgctccattcattgtatctgattccagagcctacctagaccatgatatgtttgctataatatctggccctacaattgctgccatctctatggtatttgatcatgcagaacatgaagaggtttatcaaacatgcattaatggatttttagctattgcaaagatttcagcatgccaccatcttgaagatgtactagatgatttggttgtgtctctctgtaagttcacaactctgctaaacccatcatcagtggaggaacatgtgctagcctttggtgacgacacaaaagctaggatgtcaactgtgacagttttcaccattgccaataggaatttgggtccggtccgaggagaagagaaaagaaagggggagggggctggaggtgaatttgggtatggggttactcttggatttgggagtgaaagtggagcatcgcaaactcccaatgagacaccagctaggtcaagcaccggaacaacaccaactgctacaagtgaatctgctgcaccgcttatgcttcctcccccaccaccttctgcagctggaacttggaagttggaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

395

Amino Acids

43.96

Weight (kDa)

5.39

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 116
AciI CCGC 2 cut(s) 244, 1130
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 4 cut(s) 194, 226, 952, 1007
AfaI GTAC 2 cut(s) 205, 813
AfiI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 4 cut(s) 182, 305, 384, 806
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 5 cut(s) 511, 773, 911, 1079, 1163
AluI AGCT 5 cut(s) 511, 773, 911, 1079, 1163
Alw26I GTCTC 3 cut(s) 251, 837, 1064
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 3 cut(s) 701, 1124, 1160
ApoI RAATTY 4 cut(s) 194, 226, 952, 1007
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 759
Asp718I GGTACC 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 689, 959, 964
AsuHPI GGTGA 5 cut(s) 327, 433, 908, 928, 1016
AsuNHI GCTAGC 1 cut(s) 886
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 959, 964
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 688, 1111, 1172
BccI CCATC 3 cut(s) 713, 807, 871
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 2 cut(s) 3, 721
BcoDI GTCTC 3 cut(s) 251, 837, 1064
BfaI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
BfmI CTRYAG 1 cut(s) 1158
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 3 cut(s) 702, 1125, 1161
BlsI GCNGC 3 cut(s) 703, 1126, 1162
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 2 cut(s) 959, 964
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 3 cut(s) 689, 959, 964
BmiI GGNNCC 2 cut(s) 205, 960
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 594, 1061
BmtI GCTAGC 1 cut(s) 890
BpmI CTGGAG 3 cut(s) 294, 534, 1020
BsaJI CCNNGG 2 cut(s) 55, 967
BsaWI WCCGGW 2 cut(s) 961, 1091
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
Bse118I RCCGGY 1 cut(s) 588
Bse3DI GCAATG 2 cut(s) 487, 939
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 55, 967
BseGI GGATG 2 cut(s) 364, 921
BseLI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
BseMI GCAATG 2 cut(s) 487, 939
BseMII CTCAG 2 cut(s) 327, 564
BseRI GAGGAG 2 cut(s) 455, 984
BseXI GCAGC 3 cut(s) 688, 1111, 1172
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 3 cut(s) 589, 962, 1092
BslI CCNNNNNNNGG 5 cut(s) 38, 253, 557, 588, 968
BsmAI GTCTC 3 cut(s) 251, 837, 1064
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 690
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BspACI CCGC 2 cut(s) 244, 1130
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 2 cut(s) 326, 565
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 205, 960
BspMAI CTGCAG 1 cut(s) 1162
BspOI GCTAGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 487, 939
BsrFI RCCGGY 1 cut(s) 588
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 2 cut(s) 55, 967
BssMI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BssNAI GTATAC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 26, 925, 931
Bst6I CTCTTC 3 cut(s) 372, 732, 969
BstC8I GCNNGC 3 cut(s) 103, 793, 888
BstDEI CTNAG 3 cut(s) 313, 573, 615
BstF5I GGATG 2 cut(s) 364, 921
BstKTI GATC 6 cut(s) 6, 16, 88, 406, 487, 724
BstMAI GTCTC 3 cut(s) 251, 837, 1064
BstMBI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 4 cut(s) 105, 756, 795, 884
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 1158
BstV1I GCAGC 3 cut(s) 688, 1111, 1172
BstXI CCANNNNNNTGG 2 cut(s) 591, 712
BstZ17I GTATAC 1 cut(s) 117
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 1038
BtsCI GGATG 2 cut(s) 364, 921
BtsIMutI CAGTG 1 cut(s) 876
Cac8I GCNNGC 3 cut(s) 103, 793, 888
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 689, 959, 964
CpoI CGGWCCG 1 cut(s) 964
Csp6I GTAC 2 cut(s) 204, 812
CspI CGGWCCG 1 cut(s) 964
CviAII CATG 8 cut(s) 102, 164, 665, 725, 734, 753, 792, 881
CviQI GTAC 2 cut(s) 204, 812
DdeI CTNAG 3 cut(s) 313, 573, 615
DpnI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
DpnII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Eam1104I CTCTTC 3 cut(s) 372, 732, 969
EarI CTCTTC 3 cut(s) 372, 732, 969
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 959, 964
Eco88I CYCGRG 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
FatI CATG 8 cut(s) 101, 163, 664, 724, 733, 752, 791, 880
FbaI TGATCA 2 cut(s) 3, 721
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 3 cut(s) 702, 1125, 1161
FokI GGATG 2 cut(s) 371, 928
Fsp4HI GCNGC 3 cut(s) 702, 1125, 1161
FspBI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
GluI GCNGC 3 cut(s) 702, 1125, 1161
GsuI CTGGAG 3 cut(s) 294, 534, 1020
HaeIII GGCC 1 cut(s) 690
HapII CCGG 3 cut(s) 589, 962, 1092
Hin1II CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 5 cut(s) 136, 278, 538, 644, 1118
HpaII CCGG 3 cut(s) 589, 962, 1092
HphI GGTGA 5 cut(s) 327, 433, 908, 928, 1016
Hpy166II GTNNAC 3 cut(s) 117, 846, 921
Hpy188I TCNGA 5 cut(s) 8, 316, 456, 643, 968
Hpy188III TCNNGA 8 cut(s) 164, 302, 494, 502, 551, 572, 648, 803
Hpy8I GTNNAC 3 cut(s) 117, 846, 921
HpyAV CCTTC 1 cut(s) 1164
HpyCH4III ACNGT 3 cut(s) 26, 925, 931
HpyCH4V TGCA 7 cut(s) 528, 607, 728, 756, 779, 1127, 1160
HpyF3I CTNAG 3 cut(s) 313, 573, 615
Hsp92II CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 2 cut(s) 3, 721
Kzo9I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 631, 1049
Lsp1109I GCAGC 3 cut(s) 688, 1111, 1172
LweI GCATC 2 cut(s) 594, 1061
MaeI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
MaeIII GTNAC 4 cut(s) 26, 896, 925, 1021
MalI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
MboI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
MboII GAAGA 8 cut(s) 179, 359, 436, 439, 442, 749, 818, 986
MfeI CAATTG 1 cut(s) 696
MluCI AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
MmeI TCCRAC 2 cut(s) 24, 1158
Mph1103I ATGCAT 1 cut(s) 758
MseI TTAA 3 cut(s) 21, 396, 759
MslI CAYNNNNRTG 2 cut(s) 471, 710
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 589, 962, 1092
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 273
NdeII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
NheI GCTAGC 1 cut(s) 886
NlaIII CATG 8 cut(s) 105, 167, 668, 728, 737, 756, 795, 884
NlaIV GGNNCC 2 cut(s) 205, 960
NmuCI GTSAC 3 cut(s) 26, 896, 925
NsiI ATGCAT 1 cut(s) 758
NspI RCATGY 4 cut(s) 105, 756, 795, 884
PaeI GCATGC 2 cut(s) 105, 795
PaeR7I CTCGAG 1 cut(s) 492
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 136, 278, 538, 644, 1118
PkrI GCNGC 3 cut(s) 703, 1126, 1162
PscI ACATGT 1 cut(s) 880
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 205, 960
PspPI GGNCC 3 cut(s) 689, 959, 964
PstI CTGCAG 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 2 cut(s) 205, 813
RsaNI GTAC 2 cut(s) 204, 812
RseI CAYNNNNRTG 2 cut(s) 471, 710
Rsr2I CGGWCCG 1 cut(s) 964
RsrII CGGWCCG 1 cut(s) 964
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 3 cut(s) 21, 396, 759
SatI GCNGC 3 cut(s) 702, 1125, 1161
Sau3AI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Sau96I GGNCC 3 cut(s) 689, 959, 964
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 2 cut(s) 594, 1061
SfcI CTRYAG 1 cut(s) 1158
Sfr274I CTCGAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 959, 964
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 471, 710
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
SphI GCATGC 2 cut(s) 105, 795
Sse9I AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
SsiI CCGC 2 cut(s) 244, 1130
SspMI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 26, 925, 931
TaqI TCGA 1 cut(s) 493
TasI AATT 6 cut(s) 194, 226, 342, 696, 952, 1007
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 5 cut(s) 136, 278, 538, 644, 1118
Tru1I TTAA 3 cut(s) 21, 396, 759
Tru9I TTAA 3 cut(s) 21, 396, 759
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 3 cut(s) 26, 896, 925
TseI GCWGC 3 cut(s) 701, 1124, 1160
Tsp45I GTSAC 3 cut(s) 26, 896, 925
TspDTI ATGAA 4 cut(s) 239, 439, 622, 750
TspRI CASTG 1 cut(s) 876
VpaK11BI GGWCC 2 cut(s) 959, 964
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 4 cut(s) 194, 226, 952, 1007
XceI RCATGY 4 cut(s) 105, 756, 795, 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 7 cut(s) 128, 347, 659, 815, 887, 912, 1080
Zsp2I ATGCAT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.