Rw7G035390

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0020707
Physical Location & Seq
Forward (+)
52771104 .. 52772078
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035390.1

Sequence Viewer

Length: 975 bp
ATGATCGGAGCCGATCATTTTAACCGTGACCCAAAGAAAGGGTTGGAGTTCCTCCAAGGAACTCATCTCTTGCCTGATAAACTTGATCCTCAAAGTGTGGCCTGCTTTTTTAGGTATACAGCTGGGCTAGACAAGAATCTTGTTGGGGATTTCTTGGGAAATCATGACGAGTTTTGTGTTCAGGTTCTTTACAAATTTGCTGGTACCTTTGATTTCCAAGATATGAATTTGGATACTACACTCCGCCTTTTCTTGGAGACTTTTCGTTTGCCTAGAGAATCACAAAAGATACAAAGGGTTCTTGAAGCATTCTCAGAGATATACTACGAGCAATCACCTCTAATTCTAGCAAACAAGGATGCTGCTCTTCTGTTATCATATTCAATCATAATGCTCAATACAGATCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGGAATAATAGACACATCAATGGAGGCAGTGATCTACCTCGAGATTTCCTGACAGAGCTTTATCACTCAATATGCAAGAATGAGATTCGCACTACTCCAGAACAAGGTGCTGGTTATCCTGAGATGACCCCAAGCCGGTGGATTGATTTGATGCACAAATCCAAGAAAAATGCTCCATTCATTGTATCTGATTCCAGAGCCTACCTAGACCATGATATGTTTGCTATAATGTCTGGCCCTACAATTGTTGCCATCTCTGTGGTATTTGATCATGCAGAACATGAAGAGGTTTATCAAACATGCATTAATGGATTTTTAGCTATTGCAAAGATTTCAGGATGCCACCATCTTGAAGATGTACTAGATGATTTGGTTGTGTCTCTCTGTAAGTTCACAACTCTGTTAAACCCATCATCAGTTGAGGAACATGTGCTAGCCTTTGGTGACGACACAAGAGCTAGGATGTCAACTGTGACAGTTTTCATTGCCAATAGGTATGGTGATTATATTCGCACCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

324

Amino Acids

36.94

Weight (kDa)

5.43

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 3 - 180 1.1e-68 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 116
AciI CCGC 1 cut(s) 244
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 194, 226
AfaI GTAC 2 cut(s) 205, 813
AfiI CCNNNNNNNGG 4 cut(s) 38, 253, 557, 588
AflIII ACRYGT 1 cut(s) 880
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 3 cut(s) 305, 384, 806
AluBI AGCT 4 cut(s) 122, 511, 773, 911
AluI AGCT 4 cut(s) 122, 511, 773, 911
Alw26I GTCTC 2 cut(s) 251, 837
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 2 cut(s) 99, 688
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 194, 226
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 968
Asp718I GGTACC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 4 cut(s) 327, 433, 908, 965
AsuNHI GCTAGC 1 cut(s) 886
AvaI CYCGRG 1 cut(s) 492
BanI GGYRCC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 349
BccI CCATC 3 cut(s) 713, 807, 871
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 251, 837
BfaI CTAG 7 cut(s) 128, 273, 347, 659, 815, 887, 912
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 10, 205
BmsI GCATC 3 cut(s) 349, 594, 782
BmtI GCTAGC 1 cut(s) 890
BpmI CTGGAG 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 968
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 253, 557, 588
Bse118I RCCGGY 2 cut(s) 588, 968
Bse3DI GCAATG 1 cut(s) 936
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 3 cut(s) 364, 797, 921
BseLI CCNNNNNNNGG 4 cut(s) 38, 253, 557, 588
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 2 cut(s) 327, 564
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 349
BseYI CCCAGC 1 cut(s) 122
BshFI GGCC 2 cut(s) 101, 690
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 2 cut(s) 589, 969
BslI CCNNNNNNNGG 4 cut(s) 38, 253, 557, 588
BsmAI GTCTC 2 cut(s) 251, 837
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 101, 690
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BspACI CCGC 1 cut(s) 244
BspANI GGCC 2 cut(s) 101, 690
BspCNI CTCAG 2 cut(s) 326, 565
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 10, 205
BspOI GCTAGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 936
BsrFI RCCGGY 2 cut(s) 588, 968
BssAI RCCGGY 2 cut(s) 588, 968
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BssNAI GTATAC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 26, 925, 931
Bst6I CTCTTC 2 cut(s) 372, 732
BstC8I GCNNGC 2 cut(s) 103, 888
BstDEI CTNAG 2 cut(s) 313, 573
BstF5I GGATG 3 cut(s) 364, 797, 921
BstKTI GATC 6 cut(s) 6, 16, 88, 406, 487, 724
BstMAI GTCTC 2 cut(s) 251, 837
BstMBI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
BstNSI RCATGY 2 cut(s) 756, 884
BstV1I GCAGC 1 cut(s) 349
BstXI CCANNNNNNTGG 2 cut(s) 591, 712
BstZ17I GTATAC 1 cut(s) 117
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 101, 690
BtsCI GGATG 3 cut(s) 364, 797, 921
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 103, 888
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 2 cut(s) 588, 968
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 204, 812
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 6 cut(s) 164, 665, 725, 734, 753, 881
CviQI GTAC 2 cut(s) 204, 812
DdeI CTNAG 2 cut(s) 313, 573
DpnI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
DpnII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Eam1104I CTCTTC 2 cut(s) 372, 732
EarI CTCTTC 2 cut(s) 372, 732
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 6 cut(s) 167, 668, 728, 737, 756, 884
FatI CATG 6 cut(s) 163, 664, 724, 733, 752, 880
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 3 cut(s) 371, 804, 928
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 7 cut(s) 128, 273, 347, 659, 815, 887, 912
GluI GCNGC 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 101, 690
HapII CCGG 2 cut(s) 589, 969
Hin1II CATG 6 cut(s) 167, 668, 728, 737, 756, 884
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 4 cut(s) 136, 278, 538, 644
HpaII CCGG 2 cut(s) 589, 969
HphI GGTGA 4 cut(s) 327, 433, 908, 965
Hpy166II GTNNAC 3 cut(s) 117, 846, 921
Hpy188I TCNGA 4 cut(s) 8, 316, 456, 643
Hpy188III TCNNGA 9 cut(s) 164, 302, 494, 502, 551, 572, 648, 789, 803
Hpy8I GTNNAC 3 cut(s) 117, 846, 921
HpyCH4III ACNGT 3 cut(s) 26, 925, 931
HpyCH4V TGCA 5 cut(s) 528, 607, 728, 756, 779
HpyF3I CTNAG 2 cut(s) 313, 573
Hsp92II CATG 6 cut(s) 167, 668, 728, 737, 756, 884
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 6 cut(s) 3, 13, 85, 403, 484, 721
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 8, 631
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 3 cut(s) 349, 594, 782
MaeI CTAG 7 cut(s) 128, 273, 347, 659, 815, 887, 912
MaeIII GTNAC 3 cut(s) 26, 896, 925
MalI GATC 6 cut(s) 5, 15, 87, 405, 486, 723
MboI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
MboII GAAGA 6 cut(s) 359, 436, 439, 442, 749, 818
MfeI CAATTG 1 cut(s) 696
MluCI AATT 4 cut(s) 194, 226, 342, 696
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 9 cut(s) 62, 99, 348, 433, 436, 470, 501, 733, 868
Mph1103I ATGCAT 1 cut(s) 758
MseI TTAA 3 cut(s) 21, 759, 857
MslI CAYNNNNRTG 2 cut(s) 471, 710
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 589, 969
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 308
NdeII GATC 6 cut(s) 3, 13, 85, 403, 484, 721
NheI GCTAGC 1 cut(s) 886
NlaIII CATG 6 cut(s) 167, 668, 728, 737, 756, 884
NlaIV GGNNCC 2 cut(s) 10, 205
NmuCI GTSAC 3 cut(s) 26, 896, 925
NsiI ATGCAT 1 cut(s) 758
NspI RCATGY 2 cut(s) 756, 884
PaeR7I CTCGAG 1 cut(s) 492
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 4 cut(s) 136, 278, 538, 644
PinAI ACCGGT 1 cut(s) 968
PkrI GCNGC 1 cut(s) 364
PscI ACATGT 1 cut(s) 880
PshBI ATTAAT 1 cut(s) 759
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 10, 205
PspPI GGNCC 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 2 cut(s) 205, 813
RsaNI GTAC 2 cut(s) 204, 812
RseI CAYNNNNRTG 2 cut(s) 471, 710
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 3 cut(s) 21, 759, 857
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 6 cut(s) 3, 13, 85, 403, 484, 721
Sau96I GGNCC 1 cut(s) 689
SfaNI GCATC 3 cut(s) 349, 594, 782
Sfr274I CTCGAG 1 cut(s) 492
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 471, 710
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
Sse9I AATT 4 cut(s) 194, 226, 342, 696
SsiI CCGC 1 cut(s) 244
SspMI CTAG 7 cut(s) 128, 273, 347, 659, 815, 887, 912
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 26, 925, 931
TaqI TCGA 1 cut(s) 493
TasI AATT 4 cut(s) 194, 226, 342, 696
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 4 cut(s) 136, 278, 538, 644
Tru1I TTAA 3 cut(s) 21, 759, 857
Tru9I TTAA 3 cut(s) 21, 759, 857
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 3 cut(s) 26, 896, 925
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 3 cut(s) 26, 896, 925
TspDTI ATGAA 5 cut(s) 239, 439, 622, 750, 925
TspRI CASTG 1 cut(s) 487
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 194, 226
XceI RCATGY 2 cut(s) 756, 884
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 7 cut(s) 128, 273, 347, 659, 815, 887, 912
Zsp2I ATGCAT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.