Rh2AG508300

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020707
Physical Location & Seq
Reverse (-)
73311495 .. 73312154
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG508300.1

Sequence Viewer

Length: 660 bp
ATGAATTTGGATACTGCACTCCGCCTTTTCTTGGAGACGTTTCGTTTGCCTGGAGAATCACAAAAGATACAAAGGGTTCTTGAAGCATTCTCAGAGATATACTACGAGCAATCACCTCTAATTCTAGCAAACAAGGATGCTGCTCTTCTGTTATCATATTCAATCATAATGCTCAATACAGATCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGGAATAATAGACACATCAACGGAGGCAGTGATCTACCTCGAGATTTCCTGACAGAGCTTTATCACTCAATATGCAAGAATGAGATTCGCACTACTCCAGAACAAGGTGTTGGTTATCCTGAGATGACCCCAAGCCAGTGGATTGATTTGATGCACAAATCCAAGAAAAATGCTCCATTCATTGTATCTGATTCCAGAGCCTACCTAGACCATGATATGTTTGCTATAATGTCTGGCCCTACAATTGCTGCCATCTCTGTGGTATTTGATCATGCAGAACATGAAGAGGTTTATCAAACATGCATTGATGGATTTTTAGCTATTGCAAAGATTTCAGCATGCCACCATCTTGAAGATGTACTAGATGATTTGGTTGTGTCTCTCTGTAAGTTCACAACAACCCATCATCAGTTGAGGAACATGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

219

Amino Acids

25.07

Weight (kDa)

5.5

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 1 - 106 4.4e-45 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 591
AfiI CCNNNNNNNGG 2 cut(s) 31, 335
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 83, 162, 584
AjnI CCWGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 2 cut(s) 289, 551
AluI AGCT 2 cut(s) 289, 551
Alw26I GTCTC 2 cut(s) 29, 615
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 2 cut(s) 140, 479
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 105, 211
AvaI CYCGRG 1 cut(s) 270
BbvI GCAGC 2 cut(s) 127, 466
BccI CCATC 4 cut(s) 491, 533, 585, 642
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 4
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 29, 615
BfaI CTAG 4 cut(s) 125, 437, 593, 658
BfuI GTATCC 1 cut(s) 4
BisI GCNGC 2 cut(s) 141, 480
BlsI GCNGC 2 cut(s) 142, 481
Bme1390I CCNGG 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 127, 372
BpmI CTGGAG 2 cut(s) 72, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 335
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 31, 335
BseMII CTCAG 2 cut(s) 105, 342
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 127, 466
BshFI GGCC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 31, 335
BsmAI GTCTC 2 cut(s) 29, 615
BsmBI CGTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 1 cut(s) 468
BsoBI CYCGRG 1 cut(s) 270
Bsp143I GATC 3 cut(s) 181, 262, 499
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 2 cut(s) 104, 343
BspQI GCTCTTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 367
BssMI GATC 3 cut(s) 181, 262, 499
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 150, 510
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 91, 351
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 184, 265, 502
BstMAI GTCTC 2 cut(s) 29, 615
BstMBI GATC 3 cut(s) 181, 262, 499
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 3 cut(s) 534, 573, 655
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 127, 466
BstXI CCANNNNNNTGG 2 cut(s) 369, 490
BsuI GTATCC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 265, 374
Cac8I GCNNGC 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 590
CviAII CATG 6 cut(s) 443, 503, 512, 531, 570, 652
CviJI RGCY 5 cut(s) 289, 366, 431, 468, 551
CviKI_1 RGCY 5 cut(s) 289, 366, 431, 468, 551
CviQI GTAC 1 cut(s) 590
DdeI CTNAG 2 cut(s) 91, 351
DpnI GATC 3 cut(s) 183, 264, 501
DpnII GATC 3 cut(s) 181, 262, 499
Eam1104I CTCTTC 2 cut(s) 150, 510
EarI CTCTTC 2 cut(s) 150, 510
EciI GGCGGA 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 6 cut(s) 446, 506, 515, 534, 573, 655
FatI CATG 6 cut(s) 442, 502, 511, 530, 569, 651
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 141, 480
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 141, 480
FspBI CTAG 4 cut(s) 125, 437, 593, 658
GluI GCNGC 2 cut(s) 141, 480
GsuI CTGGAG 2 cut(s) 72, 312
HaeIII GGCC 1 cut(s) 468
Hin1II CATG 6 cut(s) 446, 506, 515, 534, 573, 655
HinfI GANTC 3 cut(s) 56, 316, 422
HphI GGTGA 2 cut(s) 105, 211
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 3 cut(s) 94, 234, 421
Hpy188III TCNNGA 7 cut(s) 80, 272, 280, 329, 350, 426, 581
Hpy8I GTNNAC 1 cut(s) 624
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 6 cut(s) 17, 306, 385, 506, 534, 557
HpyF3I CTNAG 2 cut(s) 91, 351
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 6 cut(s) 446, 506, 515, 534, 573, 655
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 3 cut(s) 181, 262, 499
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 36, 63, 182, 293, 342, 363, 380, 439, 450
Lsp1109I GCAGC 2 cut(s) 127, 466
LweI GCATC 2 cut(s) 127, 372
MaeI CTAG 4 cut(s) 125, 437, 593, 658
MaeII ACGT 1 cut(s) 38
MalI GATC 3 cut(s) 183, 264, 501
MboI GATC 3 cut(s) 181, 262, 499
MboII GAAGA 6 cut(s) 137, 214, 217, 220, 527, 596
MfeI CAATTG 1 cut(s) 474
MluCI AATT 3 cut(s) 4, 120, 474
MnlI CCTC 7 cut(s) 126, 211, 214, 248, 279, 511, 639
Mph1103I ATGCAT 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 51
NdeII GATC 3 cut(s) 181, 262, 499
NlaIII CATG 6 cut(s) 446, 506, 515, 534, 573, 655
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 3 cut(s) 534, 573, 655
PaeI GCATGC 1 cut(s) 573
PaeR7I CTCGAG 1 cut(s) 270
PciI ACATGT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 56, 316, 422
PkrI GCNGC 2 cut(s) 142, 481
PscI ACATGT 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 1 cut(s) 467
RsaI GTAC 1 cut(s) 591
RsaNI GTAC 1 cut(s) 590
RseI CAYNNNNRTG 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 2 cut(s) 141, 480
Sau3AI GATC 3 cut(s) 181, 262, 499
Sau96I GGNCC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 51
SetI ASST 9 cut(s) 41, 118, 201, 271, 291, 340, 438, 522, 553
SfaNI GCATC 2 cut(s) 127, 372
Sfr274I CTCGAG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SphI GCATGC 1 cut(s) 573
Sse9I AATT 3 cut(s) 4, 120, 474
SsiI CCGC 1 cut(s) 22
SspMI CTAG 4 cut(s) 125, 437, 593, 658
StyD4I CCNGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 271
TasI AATT 3 cut(s) 4, 120, 474
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 3 cut(s) 56, 316, 422
TscAI CASTG 2 cut(s) 265, 374
TseI GCWGC 2 cut(s) 140, 479
TspDTI ATGAA 4 cut(s) 17, 217, 400, 528
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 265, 374
XapI RAATTY 1 cut(s) 4
XceI RCATGY 3 cut(s) 534, 573, 655
XhoI CTCGAG 1 cut(s) 270
XspI CTAG 4 cut(s) 125, 437, 593, 658
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.