Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019501

Physical Location & Seq

Genomic Coordinates Reverse (-)

60122728 .. 60123204

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCTCGATCCCTCGAACAACTGCAGCTCGTCGCTGGAAGTATGACGTGTATTTGAGTTACTGGGATCTTGACACTCGAAGGGGTTTTACATCTCATTTATACGGTGGGCTGCAAAGGAGGGGAATTAAAACATTCATGGGTTATCAAGATCTTCAAGTAGGGGATGAGATTTATCCCACTCTCCTCAAGTGCATGGAGGACGGCCACAGAATTCTTCCAGTTTTTTATGATGTCAAGCCTAGTGATGTAAGAAATCAAAAGAGGAGTCTTGAAGATGCTTTCACCAAGCATGAGCGATTCGAATCGGAGAAGGTCAAGCAGTGGAAAGATGCTTTAAGTAAAGTGGCCGACTTCGCTGGGTTGGTTCCAAAATACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

128

Amino Acids

15.0

Weight (kDa)

9.46

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 68	4.2e-09	TIR domain
TIR	PF01582	67 - 121	2.2e-10	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019501)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035065 RLG00000035076
rosa_multiflora	Rmu_sc0002513.1_g000007 Rmu_sc0002513.1_g000012 Rmu_sc0008014.1_g000003 Rmu_sc0009793.1_g000001 Rmu_sc0019233.1_g000001
rosa_rugosa	Rorug05G0468000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	4, 75
AcoI	YGGCCR	2 cut(s)	205, 348
AcsI	RAATTY	1 cut(s)	213
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	158, 275
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
AlwI	GGATC	2 cut(s)	4, 75
AoxI	GGCC	3 cut(s)	3, 205, 348
ApeKI	GCWGC	2 cut(s)	26, 112
ApoI	RAATTY	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
BbvI	GCAGC	2 cut(s)	38, 99
BceAI	ACGGC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	24
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	27, 113
BlsI	GCNGC	2 cut(s)	28, 114
BmgBI	CACGTC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	369
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	268, 322
BmuI	ACTGGG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	68, 221
Bse8I	GATNNNNATC	1 cut(s)	304
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	68, 221
BseRI	GAGGAG	2 cut(s)	176, 280
BseXI	GCAGC	2 cut(s)	38, 99
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	3 cut(s)	5, 207, 350
BsnI	GGCC	3 cut(s)	5, 207, 350
Bsp119I	TTCGAA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	9, 67, 151
BspANI	GGCC	3 cut(s)	5, 207, 350
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	4, 75
BspT104I	TTCGAA	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	68, 221
BssMI	GATC	3 cut(s)	9, 67, 151
Bst4CI	ACNGT	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	12, 70, 154
BstMBI	GATC	3 cut(s)	9, 67, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	38, 99
BstX2I	RGATCY	2 cut(s)	67, 151
BstYI	RGATCY	2 cut(s)	67, 151
BsuRI	GGCC	3 cut(s)	5, 207, 350
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
CviAII	CATG	3 cut(s)	139, 196, 293
CviJI	RGCY	6 cut(s)	5, 29, 112, 207, 241, 350
CviKI_1	RGCY	6 cut(s)	5, 29, 112, 207, 241, 350
DpnI	GATC	3 cut(s)	11, 69, 153
DpnII	GATC	3 cut(s)	9, 67, 151
EaeI	YGGCCR	2 cut(s)	205, 348
EcoRI	GAATTC	1 cut(s)	213
FaeI	CATG	3 cut(s)	142, 199, 296
FaiI	YATR	6 cut(s)	45, 103, 140, 197, 231, 294
FatI	CATG	3 cut(s)	138, 195, 292
Fnu4HI	GCNGC	2 cut(s)	27, 113
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	27, 113
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	27, 113
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	3 cut(s)	5, 207, 350
Hin1II	CATG	3 cut(s)	142, 199, 296
HinfI	GANTC	3 cut(s)	268, 300, 305
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	71, 149, 272
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	75, 307
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	26, 115, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	142, 199, 296
Kzo9I	GATC	3 cut(s)	9, 67, 151
LpnPI	CCDG	5 cut(s)	22, 49, 234, 345, 364
Lsp1109I	GCAGC	2 cut(s)	38, 99
LweI	GCATC	2 cut(s)	268, 322
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	11, 69, 153
MboI	GATC	3 cut(s)	9, 67, 151
MboII	GAAGA	3 cut(s)	146, 209, 287
MflI	RGATCY	2 cut(s)	67, 151
MluCI	AATT	2 cut(s)	126, 213
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	6 cut(s)	16, 24, 114, 193, 197, 258
MseI	TTAA	2 cut(s)	129, 338
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	9, 67, 151
NlaIII	CATG	3 cut(s)	142, 199, 296
NlaIV	GGNNCC	1 cut(s)	369
NspV	TTCGAA	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	300, 305
PkrI	GCNGC	2 cut(s)	28, 114
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	67, 151
SaqAI	TTAA	2 cut(s)	129, 338
SatI	GCNGC	2 cut(s)	27, 113
Sau3AI	GATC	3 cut(s)	9, 67, 151
SchI	GAGTC	1 cut(s)	277
SetI	ASST	4 cut(s)	31, 51, 318, 383
SfaNI	GCATC	2 cut(s)	268, 322
SfcI	CTRYAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	2 cut(s)	126, 213
SspMI	CTAG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	8, 16, 79, 303
TasI	AATT	2 cut(s)	126, 213
TfiI	GAWTC	2 cut(s)	300, 305
Tru1I	TTAA	2 cut(s)	129, 338
Tru9I	TTAA	2 cut(s)	129, 338
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	2 cut(s)	26, 112
TspDTI	ATGAA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	213
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.