Rmu_sc0019233.1_g000001

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019233.1
Physical Location & Seq
Reverse (-)
360 .. 836
477 bp
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UTR
Exon/CDS
Intron
Rmu_sc0019233.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
atggcctcgatccctcgaacaactgaagctcgtcgctggaagtatgacgtgtatttgagttactgggatcttgacactcgaaggggttttacatctcatttatacggtggtctgcagaggaggggaattaaaacattcatgggttatcaagatcttcaagtaggggatgagatttatcccactctcctaaaggtaatcgaaggatcaaggttggcaattgttgttctgtcccaaaattatgcttcttctgcttggtgtttggatgaacttacaaagatttgtcagttcatggaggacggccacagaattcttccagttttttatgatgtcaagcctagtgatgtaagaaatcaaaagaggagtcttgaagatgctttcaccaagcatgagcgattcgaatcggagaaggtcaagcagtggagagatgctttaagaaaagtggccgacttcgctgggttggttccaaaatacaggtaa

Protein Analysis

158

Amino Acids

18.59

Weight (kDa)

9.2

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 4, 75, 211
AcoI YGGCCR 2 cut(s) 298, 441
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 2 cut(s) 158, 368
AjiI CACGTC 1 cut(s) 49
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwI GGATC 3 cut(s) 4, 75, 211
AoxI GGCC 3 cut(s) 3, 298, 441
ApoI RAATTY 1 cut(s) 306
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AsuHPI GGTGA 1 cut(s) 370
AsuII TTCGAA 1 cut(s) 396
BarI GAAGNNNNNNTAC 2 cut(s) 73, 105
BceAI ACGGC 1 cut(s) 313
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 151
BmgBI CACGTC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 462
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 361, 415
BmuI ACTGGG 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 68, 314
Bse8I GATNNNNATC 1 cut(s) 397
BseGI GGATG 2 cut(s) 172, 268
BseJI GATNNNNATC 1 cut(s) 397
BseNI ACTGG 2 cut(s) 68, 314
BseRI GAGGAG 2 cut(s) 133, 373
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 3 cut(s) 5, 300, 443
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 3 cut(s) 5, 300, 443
Bsp119I TTCGAA 1 cut(s) 396
Bsp143I GATC 4 cut(s) 9, 67, 151, 203
BspANI GGCC 3 cut(s) 5, 300, 443
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 3 cut(s) 4, 75, 211
BspT104I TTCGAA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 68, 314
BssMI GATC 4 cut(s) 9, 67, 151, 203
Bst4CI ACNGT 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 396
BstF5I GGATG 2 cut(s) 172, 268
BstKTI GATC 4 cut(s) 12, 70, 154, 206
BstMBI GATC 4 cut(s) 9, 67, 151, 203
BstMWI GCNNNNNNNGC 2 cut(s) 248, 449
BstSFI CTRYAG 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 67, 151
BstYI RGATCY 2 cut(s) 67, 151
BsuRI GGCC 3 cut(s) 5, 300, 443
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 2 cut(s) 172, 268
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
CviAII CATG 3 cut(s) 139, 289, 386
CviJI RGCY 5 cut(s) 5, 29, 300, 334, 443
CviKI_1 RGCY 5 cut(s) 5, 29, 300, 334, 443
DpnI GATC 4 cut(s) 11, 69, 153, 205
DpnII GATC 4 cut(s) 9, 67, 151, 203
EaeI YGGCCR 2 cut(s) 298, 441
Eco57I CTGAAG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 306
FaeI CATG 3 cut(s) 142, 292, 389
FaiI YATR 7 cut(s) 45, 103, 140, 240, 290, 324, 387
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 138, 288, 385
FokI GGATG 2 cut(s) 179, 275
FspBI CTAG 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 3 cut(s) 5, 300, 443
Hin1II CATG 3 cut(s) 142, 292, 389
HinfI GANTC 3 cut(s) 361, 393, 398
HphI GGTGA 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 3 cut(s) 71, 149, 365
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 3 cut(s) 75, 194, 400
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 449
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 3 cut(s) 142, 292, 389
Kzo9I GATC 4 cut(s) 9, 67, 151, 203
LpnPI CCDG 5 cut(s) 22, 49, 327, 438, 457
LweI GCATC 2 cut(s) 361, 415
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 59
MalI GATC 4 cut(s) 11, 69, 153, 205
MboI GATC 4 cut(s) 9, 67, 151, 203
MboII GAAGA 4 cut(s) 146, 237, 302, 380
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 2 cut(s) 67, 151
MluCI AATT 4 cut(s) 126, 216, 235, 306
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 6 cut(s) 16, 24, 111, 114, 286, 351
MseI TTAA 2 cut(s) 129, 431
MunI CAATTG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 248, 449
NdeII GATC 4 cut(s) 9, 67, 151, 203
NlaIII CATG 3 cut(s) 142, 292, 389
NlaIV GGNNCC 1 cut(s) 462
NspV TTCGAA 1 cut(s) 396
PfeI GAWTC 2 cut(s) 393, 398
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 2 cut(s) 67, 151
SaqAI TTAA 2 cut(s) 129, 431
Sau3AI GATC 4 cut(s) 9, 67, 151, 203
SchI GAGTC 1 cut(s) 370
SetI ASST 6 cut(s) 31, 51, 195, 212, 411, 476
SfaNI GCATC 2 cut(s) 361, 415
SfcI CTRYAG 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 396
Sse9I AATT 4 cut(s) 126, 216, 235, 306
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 8, 16, 79, 198, 396
TasI AATT 4 cut(s) 126, 216, 235, 306
TfiI GAWTC 2 cut(s) 393, 398
Tru1I TTAA 2 cut(s) 129, 431
Tru9I TTAA 2 cut(s) 129, 431
TscAI CASTG 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 127, 277, 279
TspRI CASTG 1 cut(s) 422
XapI RAATTY 1 cut(s) 306
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.