RLG00000035647

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020047
Physical Location & Seq
Forward (+)
69728642 .. 69729139
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035647

Sequence Viewer

Length: 417 bp
ATGACTCAAAAGCTATCGACCACACCCAAAAGCTATGGGTTTAAAGTTTCTTACTGGACCAGGCCCGACCCGGTTTCAGTTCACCTCGACGATCAGCAGCTCATCTGCACGCCAACGTCGTTCGACCAGAAACCTGGTGTAGCACCAACCTCAGCAACTTCGGCCCCGAGCCTCTACTACGGCGCGGTGGAGAGAGAGAGAGGAGAGAGACAGCGCGGAGGAATCAGAATCTGGTTTGGAGTTTCCAAAGCTATCCGGCACGAAAGCTCGTCTCTGGCGCCACCAACAACGACGCCGGCCCCAACTCCATGGAGCTCTTCTGAATCTGGCTCGGCGCCGTCATGGTCAGCGAGTTCATCCTCGCCACCATGCTCTGGAACCCCTAAGGTTGTCCAAGAACACCTCGGGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.81

Weight (kDa)

8.64

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020047)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035647
rosa_multiflora Rmu_sc0004129.1_g000012
rosa_samantha Rh1CG059300 Rh1DG063200 Rh4CG437500 Rh4DG418500 Rh6AG510800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 334
AccB7I CCANNNNNTGG 1 cut(s) 374
AccII CGCG 2 cut(s) 185, 216
AciI CCGC 2 cut(s) 185, 216
AcyI GRCGYC 3 cut(s) 278, 293, 335
AfiI CCNNNNNNNGG 2 cut(s) 374, 409
AjnI CCWGG 2 cut(s) 59, 133
AluBI AGCT 6 cut(s) 13, 33, 100, 251, 267, 315
AluI AGCT 6 cut(s) 13, 33, 100, 251, 267, 315
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 202, 276
AlwNI CAGNNNCTG 1 cut(s) 231
Ama87I CYCGRG 2 cut(s) 166, 404
AoxI GGCC 3 cut(s) 62, 162, 297
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 4 cut(s) 185, 216, 280, 337
AspS9I GGNCC 4 cut(s) 57, 63, 163, 298
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 74
AvaI CYCGRG 2 cut(s) 166, 404
AvaII GGWCC 1 cut(s) 57
AxyI CCTNAGG 1 cut(s) 384
BanI GGYRCC 2 cut(s) 277, 334
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 2 cut(s) 196, 322
BciT130I CCWGG 2 cut(s) 61, 135
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 202, 276
BfoI RGCGCY 2 cut(s) 281, 338
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 61, 71, 135
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 2 cut(s) 166, 404
BmgT120I GGNCC 4 cut(s) 57, 63, 163, 298
BmiI GGNNCC 5 cut(s) 165, 279, 300, 336, 379
BmrFI CCNGG 3 cut(s) 61, 71, 135
Bpu10I CCTNAGC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 71
BsaHI GRCGYC 3 cut(s) 278, 293, 335
BsaJI CCNNGG 2 cut(s) 308, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 409
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 59
Bse21I CCTNAGG 1 cut(s) 384
BseBI CCWGG 2 cut(s) 61, 135
BseDI CCNNGG 2 cut(s) 308, 403
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 374, 409
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 185, 216
BshFI GGCC 3 cut(s) 64, 164, 299
BshNI GGYRCC 2 cut(s) 277, 334
BsiHKAI GWGCWC 1 cut(s) 317
BsiHKCI CYCGRG 2 cut(s) 166, 404
BsiSI CCGG 3 cut(s) 71, 256, 296
BslI CCNNNNNNNGG 2 cut(s) 374, 409
BsmAI GTCTC 2 cut(s) 202, 276
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 3 cut(s) 64, 164, 299
BsoBI CYCGRG 2 cut(s) 166, 404
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 2 cut(s) 185, 216
BspANI GGCC 3 cut(s) 64, 164, 299
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 2 cut(s) 185, 216
BspLI GGNNCC 5 cut(s) 165, 279, 300, 336, 379
BspQI GCTCTTC 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 277, 334
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 308, 403
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 3 cut(s) 278, 293, 335
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 61, 135
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 3 cut(s) 278, 293, 335
BstC8I GCNNGC 2 cut(s) 110, 297
BstDEI CTNAG 2 cut(s) 151, 384
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 2 cut(s) 185, 216
BstH2I RGCGCY 2 cut(s) 281, 338
BstHHI GCGC 4 cut(s) 185, 216, 280, 337
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 2 cut(s) 202, 276
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 61, 135
BstSCI CCNGG 3 cut(s) 59, 69, 133
BstUI CGCG 2 cut(s) 185, 216
BstV1I GCAGC 1 cut(s) 109
BstXI CCANNNNNNTGG 2 cut(s) 134, 309
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 3 cut(s) 64, 164, 299
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 110, 297
CaiI CAGNNNCTG 1 cut(s) 231
CfoI GCGC 4 cut(s) 185, 216, 280, 337
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 57, 63, 163, 298
CseI GACGC 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 133
CviAII CATG 3 cut(s) 309, 342, 369
DdeI CTNAG 2 cut(s) 151, 384
DinI GGCGCC 2 cut(s) 279, 336
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 166, 404
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 59, 133
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 317
EgeI GGCGCC 2 cut(s) 279, 336
EheI GGCGCC 2 cut(s) 279, 336
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 3 cut(s) 312, 345, 372
FaiI YATR 4 cut(s) 36, 310, 343, 370
FatI CATG 3 cut(s) 308, 341, 368
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 4 cut(s) 184, 215, 279, 336
GluI GCNGC 1 cut(s) 98
HaeII RGCGCY 2 cut(s) 281, 338
HaeIII GGCC 3 cut(s) 64, 164, 299
HapII CCGG 3 cut(s) 71, 256, 296
HgaI GACGC 1 cut(s) 301
HhaI GCGC 4 cut(s) 185, 216, 280, 337
Hin1I GRCGYC 3 cut(s) 278, 293, 335
Hin1II CATG 3 cut(s) 312, 345, 372
Hin6I GCGC 4 cut(s) 183, 214, 278, 335
HinP1I GCGC 4 cut(s) 183, 214, 278, 335
HinfI GANTC 4 cut(s) 4, 222, 228, 323
HpaII CCGG 3 cut(s) 71, 256, 296
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 227, 322
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 3 cut(s) 92, 121, 295
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 151, 384
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 3 cut(s) 278, 293, 335
Hsp92II CATG 3 cut(s) 312, 345, 372
HspAI GCGC 4 cut(s) 183, 214, 278, 335
KasI GGCGCC 2 cut(s) 277, 334
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 109
MabI ACCWGGT 1 cut(s) 133
MaeII ACGT 1 cut(s) 116
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 317
Mly113I GGCGCC 2 cut(s) 278, 335
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 7 cut(s) 95, 160, 182, 194, 212, 370, 413
MroNI GCCGGC 1 cut(s) 295
MseI TTAA 1 cut(s) 42
MspI CCGG 3 cut(s) 71, 256, 296
MspR9I CCNGG 3 cut(s) 61, 71, 135
MvaI CCWGG 2 cut(s) 61, 135
MvnI CGCG 2 cut(s) 185, 216
MwoI GCNNNNNNNGC 1 cut(s) 161
NaeI GCCGGC 1 cut(s) 297
NarI GGCGCC 2 cut(s) 278, 335
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 308
NdeII GATC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 3 cut(s) 312, 345, 372
NlaIV GGNNCC 5 cut(s) 165, 279, 300, 336, 379
NmeAIII GCCGAG 1 cut(s) 311
PciSI GCTCTTC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 222, 228, 323
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 1 cut(s) 99
PluTI GGCGCC 2 cut(s) 281, 338
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 59, 133
PspGI CCWGG 2 cut(s) 59, 133
PspN4I GGNNCC 5 cut(s) 165, 279, 300, 336, 379
PspPI GGNCC 4 cut(s) 57, 63, 163, 298
PstNI CAGNNNCTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 4 cut(s) 57, 63, 163, 298
ScrFI CCNGG 3 cut(s) 61, 71, 135
SduI GDGCHC 1 cut(s) 317
SexAI ACCWGGT 1 cut(s) 133
SfoI GGCGCC 2 cut(s) 279, 336
SinI GGWCC 1 cut(s) 57
SsiI CCGC 2 cut(s) 185, 216
SspDI GGCGCC 2 cut(s) 277, 334
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 59, 69, 133
StyI CCWWGG 1 cut(s) 308
TaiI ACGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 17, 87, 123
TfiI GAWTC 3 cut(s) 222, 228, 323
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.