Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0020047

Physical Location & Seq

Genomic Coordinates Reverse (-)

11099913 .. 11111334

Gene Structure 11422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG063200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACTCAAAAGCTATCGACCACACCCAAAAGCTATGGGTTTAAAGTTTCTTACCAGACCAGGCCCAACCTGGTTTCAGTTCACCTCGACGATCAGCAGCTCATCTGCACGCCAACGTCGTTCGACCAGAAACCTGGTGCAGCACCGACCTCAGCGACTTCGGCTACGACGCGTAAGCTAGTCTCCGAAGCCTCGACTACGGCGCGGCGGAGAGAGACAGCGCGAAGGAATCAGAATCTGGTTTGGAAAAGCTATCCGGCGCGGAAGCTCGTCTCCGGCGCAGAAGCTCGTCTCCGGCGCCATCAACAACGACGCCGGTCCCAACTCCATGGTCCTCACTTTCGCCAACCCTTTCTGGATCAAAATCGCCGTCCTCGCAAAACGGTCCATGAAAAACGCGAGACGAGTGCAGGAGCTCTTCGGAATCCGGCTCGGCGCCGTCATGGTCACCGAGTTCATCCTCGCCACCATGTTCTGGAACTCCTAAGGTGCAGGGACAGCAGGGTTGCATGGGTCCTGACTCCTGAGCGAGGTTTTGCTTATTACTGGTGGAGGTCAATTTCTGTGTTGACAGTCTGTGGTTTTTTTGCAGTCAGATGGCAAAGAAATAAATCTCGAGAAATGCTTGAGGACAGTTCTATAGAGCCAATGCATCAAGTACCTTGGACCGCTGCAATTGGTACTGAACTCAGGAAGAGCAACCTGCTGTTCTATGTATTACCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

242

Amino Acids

28.24

Weight (kDa)

11.39

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020047)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035647
rosa_multiflora	Rmu_sc0004129.1_g000012
rosa_samantha	Rh1CG059300 Rh1DG063200 Rh4CG437500 Rh4DG418500 Rh6AG510800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	711
AccB1I	GGYRCC	2 cut(s)	297, 435
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccII	CGCG	5 cut(s)	172, 205, 223, 262, 399
AciI	CCGC	4 cut(s)	205, 208, 262, 669
AclWI	GGATC	1 cut(s)	366
AcyI	GRCGYC	3 cut(s)	298, 313, 436
AfaI	GTAC	2 cut(s)	660, 682
AfiI	CCNNNNNNNGG	2 cut(s)	475, 530
AflIII	ACRYGT	1 cut(s)	170
AjnI	CCWGG	3 cut(s)	59, 69, 133
AluBI	AGCT	8 cut(s)	13, 33, 100, 178, 252, 268, 287, 416
AluI	AGCT	8 cut(s)	13, 33, 100, 178, 252, 268, 287, 416
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	5 cut(s)	187, 209, 277, 296, 395
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	97, 140, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspLEI	GCGC	6 cut(s)	205, 223, 262, 281, 300, 438
AspS9I	GGNCC	6 cut(s)	63, 318, 332, 385, 514, 666
AsuHPI	GGTGA	2 cut(s)	74, 440
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	5 cut(s)	318, 332, 385, 514, 666
AxyI	CCTNAGG	1 cut(s)	485
BanI	GGYRCC	2 cut(s)	297, 435
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	3 cut(s)	109, 152, 658
BccI	CCATC	2 cut(s)	309, 591
BceAI	ACGGC	3 cut(s)	216, 354, 423
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	3 cut(s)	61, 71, 135
BcoDI	GTCTC	5 cut(s)	187, 209, 277, 296, 395
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	2 cut(s)	301, 439
BfuAI	ACCTGC	1 cut(s)	711
BisI	GCNGC	4 cut(s)	98, 141, 206, 672
BlsI	GCNGC	4 cut(s)	99, 142, 207, 673
Bme1390I	CCNGG	3 cut(s)	61, 71, 135
Bme18I	GGWCC	5 cut(s)	318, 332, 385, 514, 666
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	6 cut(s)	63, 318, 332, 385, 514, 666
BmiI	GGNNCC	4 cut(s)	299, 320, 437, 515
BmrFI	CCNGG	3 cut(s)	61, 71, 135
BmsI	GCATC	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	316
Bpu10I	CCTNAGC	2 cut(s)	151, 525
BpuEI	CTTGAG	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	3 cut(s)	298, 313, 436
BsaJI	CCNNGG	2 cut(s)	328, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 530
Bse118I	RCCGGY	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	551
Bse21I	CCTNAGG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	61, 71, 135
BseDI	CCNNGG	2 cut(s)	328, 662
BseGI	GGATG	1 cut(s)	457
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	475, 530
BseMII	CTCAG	3 cut(s)	165, 516, 703
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	3 cut(s)	109, 152, 658
BsgI	GTGCAG	4 cut(s)	91, 159, 429, 511
Bsh1236I	CGCG	5 cut(s)	172, 205, 223, 262, 399
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	2 cut(s)	297, 435
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	5 cut(s)	257, 276, 295, 316, 428
BslFI	GGGAC	2 cut(s)	304, 509
BslI	CCNNNNNNNGG	2 cut(s)	475, 530
BsmAI	GTCTC	5 cut(s)	187, 209, 277, 296, 395
BsmBI	CGTCTC	3 cut(s)	277, 296, 395
BsmFI	GGGAC	2 cut(s)	304, 509
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	91, 358
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	4 cut(s)	205, 208, 262, 669
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	3 cut(s)	164, 517, 702
BspFNI	CGCG	5 cut(s)	172, 205, 223, 262, 399
BspLI	GGNNCC	4 cut(s)	299, 320, 437, 515
BspMI	ACCTGC	1 cut(s)	711
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	2 cut(s)	423, 689
BspT107I	GGYRCC	2 cut(s)	297, 435
BsrFI	RCCGGY	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	328, 662
BssMI	GATC	2 cut(s)	91, 358
BssNI	GRCGYC	3 cut(s)	298, 313, 436
BssT1I	CCWWGG	2 cut(s)	328, 662
Bst2UI	CCWGG	3 cut(s)	61, 71, 135
Bst4CI	ACNGT	3 cut(s)	385, 574, 635
Bst6I	CTCTTC	2 cut(s)	423, 689
BstACI	GRCGYC	3 cut(s)	298, 313, 436
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	4 cut(s)	151, 485, 525, 689
BstDSI	CCRYGG	1 cut(s)	328
BstEII	GGTNACC	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	5 cut(s)	172, 205, 223, 262, 399
BstH2I	RGCGCY	2 cut(s)	301, 439
BstHHI	GCGC	6 cut(s)	205, 223, 262, 281, 300, 438
BstKTI	GATC	2 cut(s)	94, 361
BstMAI	GTCTC	5 cut(s)	187, 209, 277, 296, 395
BstMBI	GATC	2 cut(s)	91, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 375, 498
BstNI	CCWGG	3 cut(s)	61, 71, 135
BstPAI	GACNNNNGTC	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	59, 69, 133
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	5 cut(s)	172, 205, 223, 262, 399
BstV1I	GCAGC	3 cut(s)	109, 152, 658
BstXI	CCANNNNNNTGG	2 cut(s)	134, 329
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	6 cut(s)	205, 223, 262, 281, 300, 438
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	6 cut(s)	63, 318, 332, 385, 514, 666
CseI	GACGC	2 cut(s)	178, 321
CsiI	ACCWGGT	2 cut(s)	69, 133
Csp6I	GTAC	2 cut(s)	659, 681
CviAII	CATG	5 cut(s)	329, 389, 443, 470, 510
CviQI	GTAC	2 cut(s)	659, 681
DdeI	CTNAG	4 cut(s)	151, 485, 525, 689
DinI	GGCGCC	2 cut(s)	299, 437
DpnI	GATC	2 cut(s)	93, 360
DpnII	GATC	2 cut(s)	91, 358
DraI	TTTAAA	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	423, 689
EarI	CTCTTC	2 cut(s)	423, 689
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	328, 662
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	5 cut(s)	318, 332, 385, 514, 666
Eco53kI	GAGCTC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	615
Eco91I	GGTNACC	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	59, 69, 133
EcoT14I	CCWWGG	2 cut(s)	328, 662
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	1 cut(s)	418
EgeI	GGCGCC	2 cut(s)	299, 437
EheI	GGCGCC	2 cut(s)	299, 437
ErhI	CCWWGG	2 cut(s)	328, 662
Esp3I	CGTCTC	3 cut(s)	277, 296, 395
FaeI	CATG	5 cut(s)	332, 392, 446, 473, 513
FaiI	YATR	8 cut(s)	36, 330, 390, 444, 471, 511, 641, 714
FaqI	GGGAC	2 cut(s)	304, 509
FatI	CATG	5 cut(s)	328, 388, 442, 469, 509
Fnu4HI	GCNGC	4 cut(s)	98, 141, 206, 672
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	4 cut(s)	98, 141, 206, 672
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	6 cut(s)	204, 222, 261, 280, 299, 437
GluI	GCNGC	4 cut(s)	98, 141, 206, 672
HaeII	RGCGCY	2 cut(s)	301, 439
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	5 cut(s)	257, 276, 295, 316, 428
HgaI	GACGC	2 cut(s)	178, 321
HhaI	GCGC	6 cut(s)	205, 223, 262, 281, 300, 438
Hin1I	GRCGYC	3 cut(s)	298, 313, 436
Hin1II	CATG	5 cut(s)	332, 392, 446, 473, 513
Hin6I	GCGC	6 cut(s)	203, 221, 260, 279, 298, 436
HinP1I	GCGC	6 cut(s)	203, 221, 260, 279, 298, 436
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	5 cut(s)	4, 229, 235, 424, 520
HpaII	CCGG	5 cut(s)	257, 276, 295, 316, 428
HphI	GGTGA	2 cut(s)	74, 440
Hpy166II	GTNNAC	2 cut(s)	82, 570
Hpy188I	TCNGA	4 cut(s)	187, 234, 423, 596
Hpy188III	TCNNGA	7 cut(s)	356, 476, 517, 524, 615, 617, 691
Hpy8I	GTNNAC	2 cut(s)	82, 570
Hpy99I	CGWCG	4 cut(s)	92, 121, 172, 315
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	3 cut(s)	385, 574, 635
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	8 cut(s)	108, 140, 410, 492, 509, 590, 652, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 375, 498
HpyF3I	CTNAG	4 cut(s)	151, 485, 525, 689
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	3 cut(s)	298, 313, 436
Hsp92II	CATG	5 cut(s)	332, 392, 446, 473, 513
HspAI	GCGC	6 cut(s)	203, 221, 260, 279, 298, 436
KasI	GGCGCC	2 cut(s)	297, 435
Kzo9I	GATC	2 cut(s)	91, 358
LguI	GCTCTTC	2 cut(s)	423, 689
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	3 cut(s)	109, 152, 658
LweI	GCATC	1 cut(s)	661
MabI	ACCWGGT	2 cut(s)	69, 133
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	93, 360
MboI	GATC	2 cut(s)	91, 358
MboII	GAAGA	2 cut(s)	410, 706
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	2 cut(s)	558, 675
MluI	ACGCGT	1 cut(s)	170
Mly113I	GGCGCC	2 cut(s)	298, 436
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	9 cut(s)	95, 160, 202, 345, 384, 471, 524, 546, 622
Mph1103I	ATGCAT	1 cut(s)	654
MseI	TTAA	2 cut(s)	42, 727
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	5 cut(s)	257, 276, 295, 316, 428
MspR9I	CCNGG	3 cut(s)	61, 71, 135
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	3 cut(s)	61, 71, 135
MvnI	CGCG	5 cut(s)	172, 205, 223, 262, 399
MwoI	GCNNNNNNNGC	3 cut(s)	161, 375, 498
NarI	GGCGCC	2 cut(s)	298, 436
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	91, 358
NlaIII	CATG	5 cut(s)	332, 392, 446, 473, 513
NlaIV	GGNNCC	4 cut(s)	299, 320, 437, 515
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	615
PciSI	GCTCTTC	2 cut(s)	423, 689
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	229, 235, 424
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	99, 142, 207, 673
PleI	GAGTC	1 cut(s)	514
PluTI	GGCGCC	2 cut(s)	301, 439
PpsI	GAGTC	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	59, 69, 133
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	3 cut(s)	59, 69, 133
PspN4I	GGNNCC	4 cut(s)	299, 320, 437, 515
PspPI	GGNCC	6 cut(s)	63, 318, 332, 385, 514, 666
PspPPI	RGGWCCY	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	660, 682
RsaNI	GTAC	2 cut(s)	659, 681
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	2 cut(s)	423, 689
SaqAI	TTAA	2 cut(s)	42, 727
SatI	GCNGC	4 cut(s)	98, 141, 206, 672
Sau3AI	GATC	2 cut(s)	91, 358
Sau96I	GGNCC	6 cut(s)	63, 318, 332, 385, 514, 666
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	3 cut(s)	61, 71, 135
SduI	GDGCHC	1 cut(s)	418
SexAI	ACCWGGT	2 cut(s)	69, 133
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	639
SfoI	GGCGCC	2 cut(s)	299, 437
Sfr274I	CTCGAG	1 cut(s)	615
SinI	GGWCC	5 cut(s)	318, 332, 385, 514, 666
SlaI	CTCGAG	1 cut(s)	615
SmlI	CTYRAG	2 cut(s)	615, 626
SmoI	CTYRAG	2 cut(s)	615, 626
Sse9I	AATT	2 cut(s)	558, 675
SsiI	CCGC	4 cut(s)	205, 208, 262, 669
SspDI	GGCGCC	2 cut(s)	297, 435
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	3 cut(s)	59, 69, 133
StyI	CCWWGG	2 cut(s)	328, 662
TaaI	ACNGT	3 cut(s)	385, 574, 635
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	5 cut(s)	17, 87, 123, 194, 616
TasI	AATT	2 cut(s)	558, 675
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	229, 235, 424
Tru1I	TTAA	2 cut(s)	42, 727
Tru9I	TTAA	2 cut(s)	42, 727
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	97, 140, 671
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	405, 446
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	5 cut(s)	318, 332, 385, 514, 666
XagI	CCTNNNNNAGG	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	615
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.