Rh6AG510800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020047
Physical Location & Seq
Reverse (-)
68170035 .. 68170472
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG510800.1

Sequence Viewer

Length: 438 bp
ATGACTCAAAAGCTATCGACCACACCCAAAAGCTATGGGTTTAAAGTTTCTTACCAGACCAGGCCCAACCCGGTTTCAGTTCACCTCGACGATCAACAGCTCATCTGCACGCCAACGTCGTTCGACCAGAAACCTGGTGCAGCACCGACCTCAGCGACTTCGGCTACGGCGCGGAAGCTAGTCTCTGAAGCCTCGACTACGGCGCGGCGGAGAGAGACAGCGCGAAGGAATCAGAATCTGGTTTGGAAAAGCTCTCCGGCGCGGAAGCTCGTCTCCGGCGCCACCAACAACGACGCCGGCCCCAACTCCATGGTCTGGCGAGACGAGTGCAGGAGCTCTTCGGAATCCGGCTCGGCGCCGTCATGGTCACCGAGTTCATCCTCGCCACCATGTTCTGGAACTCCTAAGGTTGTCCAAGAACGCCTCGGGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.6

Weight (kDa)

9.87

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020047)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035647
rosa_multiflora Rmu_sc0004129.1_g000012
rosa_samantha Rh1CG059300 Rh1DG063200 Rh4CG437500 Rh4DG418500 Rh6AG510800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 278, 355
AccB7I CCANNNNNTGG 2 cut(s) 315, 395
AccII CGCG 4 cut(s) 172, 205, 223, 262
AciI CCGC 4 cut(s) 172, 205, 208, 262
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 3 cut(s) 279, 294, 356
AfiI CCNNNNNNNGG 3 cut(s) 315, 395, 430
AjnI CCWGG 2 cut(s) 59, 133
AluBI AGCT 7 cut(s) 13, 33, 100, 178, 252, 268, 336
AluI AGCT 7 cut(s) 13, 33, 100, 178, 252, 268, 336
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 4 cut(s) 187, 209, 277, 315
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 2 cut(s) 62, 298
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 6 cut(s) 172, 205, 223, 262, 281, 358
AspS9I GGNCC 2 cut(s) 63, 299
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 74, 360
AvaI CYCGRG 1 cut(s) 425
AxyI CCTNAGG 1 cut(s) 405
BanI GGYRCC 2 cut(s) 278, 355
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 183, 216, 343
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 2 cut(s) 61, 135
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 4 cut(s) 187, 209, 277, 315
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 2 cut(s) 282, 359
BisI GCNGC 2 cut(s) 141, 206
BlsI GCNGC 2 cut(s) 142, 207
Bme1390I CCNGG 3 cut(s) 61, 71, 135
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 63, 299
BmiI GGNNCC 3 cut(s) 280, 301, 357
BmrFI CCNGG 3 cut(s) 61, 71, 135
Bpu10I CCTNAGC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 71
BsaHI GRCGYC 3 cut(s) 279, 294, 356
BsaJI CCNNGG 2 cut(s) 309, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 315, 395, 430
Bse118I RCCGGY 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 61, 135
BseDI CCNNGG 2 cut(s) 309, 424
BseGI GGATG 1 cut(s) 377
BseLI CCNNNNNNNGG 3 cut(s) 315, 395, 430
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 3 cut(s) 91, 159, 349
Bsh1236I CGCG 4 cut(s) 172, 205, 223, 262
BshFI GGCC 2 cut(s) 64, 300
BshNI GGYRCC 2 cut(s) 278, 355
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 5 cut(s) 71, 257, 276, 297, 348
BslI CCNNNNNNNGG 3 cut(s) 315, 395, 430
BsmAI GTCTC 4 cut(s) 187, 209, 277, 315
BsmBI CGTCTC 2 cut(s) 277, 315
BsnI GGCC 2 cut(s) 64, 300
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 4 cut(s) 172, 205, 208, 262
BspANI GGCC 2 cut(s) 64, 300
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 4 cut(s) 172, 205, 223, 262
BspLI GGNNCC 3 cut(s) 280, 301, 357
BspQI GCTCTTC 1 cut(s) 343
BspT107I GGYRCC 2 cut(s) 278, 355
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 309, 424
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 3 cut(s) 279, 294, 356
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 61, 135
Bst6I CTCTTC 1 cut(s) 343
BstACI GRCGYC 3 cut(s) 279, 294, 356
BstC8I GCNNGC 2 cut(s) 110, 298
BstDEI CTNAG 2 cut(s) 151, 405
BstDSI CCRYGG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 366
BstF5I GGATG 1 cut(s) 377
BstFNI CGCG 4 cut(s) 172, 205, 223, 262
BstH2I RGCGCY 2 cut(s) 282, 359
BstHHI GCGC 6 cut(s) 172, 205, 223, 262, 281, 358
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 4 cut(s) 187, 209, 277, 315
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 61, 135
BstPI GGTNACC 1 cut(s) 366
BstSCI CCNGG 3 cut(s) 59, 69, 133
BstUI CGCG 4 cut(s) 172, 205, 223, 262
BstV1I GCAGC 1 cut(s) 152
BstXI CCANNNNNNTGG 2 cut(s) 134, 310
Bsu36I CCTNAGG 1 cut(s) 405
BsuRI GGCC 2 cut(s) 64, 300
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 377
Cac8I GCNNGC 2 cut(s) 110, 298
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 6 cut(s) 172, 205, 223, 262, 281, 358
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 63, 299
CseI GACGC 1 cut(s) 302
CsiI ACCWGGT 1 cut(s) 133
CviAII CATG 3 cut(s) 310, 363, 390
DdeI CTNAG 2 cut(s) 151, 405
DinI GGCGCC 2 cut(s) 280, 357
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 59, 133
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 338
EgeI GGCGCC 2 cut(s) 280, 357
EheI GGCGCC 2 cut(s) 280, 357
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 2 cut(s) 277, 315
FaeI CATG 3 cut(s) 313, 366, 393
FaiI YATR 4 cut(s) 36, 311, 364, 391
FatI CATG 3 cut(s) 309, 362, 389
Fnu4HI GCNGC 2 cut(s) 141, 206
FokI GGATG 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 2 cut(s) 141, 206
FspBI CTAG 1 cut(s) 179
GlaI GCGC 6 cut(s) 171, 204, 222, 261, 280, 357
GluI GCNGC 2 cut(s) 141, 206
HaeII RGCGCY 2 cut(s) 282, 359
HaeIII GGCC 2 cut(s) 64, 300
HapII CCGG 5 cut(s) 71, 257, 276, 297, 348
HgaI GACGC 1 cut(s) 302
HhaI GCGC 6 cut(s) 172, 205, 223, 262, 281, 358
Hin1I GRCGYC 3 cut(s) 279, 294, 356
Hin1II CATG 3 cut(s) 313, 366, 393
Hin6I GCGC 6 cut(s) 170, 203, 221, 260, 279, 356
HinP1I GCGC 6 cut(s) 170, 203, 221, 260, 279, 356
HinfI GANTC 4 cut(s) 4, 229, 235, 344
HpaII CCGG 5 cut(s) 71, 257, 276, 297, 348
HphI GGTGA 2 cut(s) 74, 360
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 187, 234, 343
Hpy188III TCNNGA 1 cut(s) 396
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 3 cut(s) 92, 121, 296
HpyAV CCTTC 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 108, 140, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 151, 405
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 3 cut(s) 279, 294, 356
Hsp92II CATG 3 cut(s) 313, 366, 393
HspAI GCGC 6 cut(s) 170, 203, 221, 260, 279, 356
KasI GGCGCC 2 cut(s) 278, 355
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 152
MabI ACCWGGT 1 cut(s) 133
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 366
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 338
Mly113I GGCGCC 2 cut(s) 279, 356
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 5 cut(s) 95, 160, 202, 391, 434
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 1 cut(s) 42
MspI CCGG 5 cut(s) 71, 257, 276, 297, 348
MspR9I CCNGG 3 cut(s) 61, 71, 135
MvaI CCWGG 2 cut(s) 61, 135
MvnI CGCG 4 cut(s) 172, 205, 223, 262
MwoI GCNNNNNNNGC 1 cut(s) 161
NaeI GCCGGC 1 cut(s) 298
NarI GGCGCC 2 cut(s) 279, 356
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 313, 366, 393
NlaIV GGNNCC 3 cut(s) 280, 301, 357
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 3 cut(s) 229, 235, 344
PflMI CCANNNNNTGG 2 cut(s) 315, 395
PkrI GCNGC 2 cut(s) 142, 207
PluTI GGCGCC 2 cut(s) 282, 359
Psp124BI GAGCTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 59, 133
PspEI GGTNACC 1 cut(s) 366
PspGI CCWGG 2 cut(s) 59, 133
PspN4I GGNNCC 3 cut(s) 280, 301, 357
PspPI GGNCC 2 cut(s) 63, 299
PstNI CAGNNNCTG 1 cut(s) 238
SacI GAGCTC 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 2 cut(s) 141, 206
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 63, 299
ScrFI CCNGG 3 cut(s) 61, 71, 135
SduI GDGCHC 1 cut(s) 338
SexAI ACCWGGT 1 cut(s) 133
SfoI GGCGCC 2 cut(s) 280, 357
SsiI CCGC 4 cut(s) 172, 205, 208, 262
SspDI GGCGCC 2 cut(s) 278, 355
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 3 cut(s) 59, 69, 133
StyI CCWWGG 1 cut(s) 309
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 17, 87, 123, 194
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 3 cut(s) 229, 235, 344
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 366
Van91I CCANNNNNTGG 2 cut(s) 315, 395
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.