Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0020047

Physical Location & Seq

Genomic Coordinates Forward (+)

62728040 .. 62728655

Gene Structure 616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACTCAAAAGCTATCGACCACACCCAAAAGCTATGGGTTTAAAGTTTCTTACCAGACCAGGCCCAACCCGATTTCAGTTCACCTCGACGATCAGCAGCTCATCTGCACGCCAACGTCGTTCGACCAGAAACCTGGTGCAGCACCGACCTCAGCGACTTCGGCTACGGCGCGGAAGCTCGTCTCCGAAGCCTCGACTACGGCGCGGCGAAGTGAGACAGCGCGAAGGAATCAGAATCTGGTTTGGAAAAGCTATCCGGCGCGGAAGCTCGTCTCCGGCGCCACCAACAACGACGCCGGCCCCAACTCCATGGTCCTCACCTTCGCCAACCCTTTCTGGATCAAAATCGCCGTCCTCGCAAAACGGTCCATGAAAAATGCGAGACGAGTGCAGGAGCTCTTCGGAATTCGGCTCGGCGCCATCAAGGTCACCGAGTTCATCCTCACCACCATGTTCTGGAACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

10.67

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020047)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035647
rosa_multiflora	Rmu_sc0004129.1_g000012
rosa_samantha	Rh1CG059300 Rh1DG063200 Rh4CG437500 Rh4DG418500 Rh6AG510800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 416
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccII	CGCG	4 cut(s)	172, 205, 223, 262
AciI	CCGC	3 cut(s)	172, 205, 262
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	405
AcyI	GRCGYC	3 cut(s)	279, 294, 417
AfiI	CCNNNNNNNGG	1 cut(s)	456
AjnI	CCWGG	2 cut(s)	59, 133
AluBI	AGCT	7 cut(s)	13, 33, 100, 178, 252, 268, 397
AluI	AGCT	7 cut(s)	13, 33, 100, 178, 252, 268, 397
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	187, 209, 277, 376
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	62, 298
ApeKI	GCWGC	2 cut(s)	97, 140
ApoI	RAATTY	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	6 cut(s)	172, 205, 223, 262, 281, 419
AspS9I	GGNCC	4 cut(s)	63, 299, 313, 366
AsuHPI	GGTGA	4 cut(s)	74, 310, 421, 436
AvaII	GGWCC	2 cut(s)	313, 366
BanI	GGYRCC	2 cut(s)	278, 416
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	109, 152
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	3 cut(s)	183, 216, 335
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	2 cut(s)	61, 135
BcoDI	GTCTC	4 cut(s)	187, 209, 277, 376
BfoI	RGCGCY	2 cut(s)	282, 420
BisI	GCNGC	3 cut(s)	98, 141, 206
BlsI	GCNGC	3 cut(s)	99, 142, 207
Bme1390I	CCNGG	2 cut(s)	61, 135
Bme18I	GGWCC	2 cut(s)	313, 366
BmgT120I	GGNCC	4 cut(s)	63, 299, 313, 366
BmiI	GGNNCC	3 cut(s)	280, 301, 418
BmrFI	CCNGG	2 cut(s)	61, 135
Bpu10I	CCTNAGC	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	3 cut(s)	279, 294, 417
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	61, 135
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	438
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	109, 152
BsgI	GTGCAG	3 cut(s)	91, 159, 410
Bsh1236I	CGCG	4 cut(s)	172, 205, 223, 262
BshFI	GGCC	2 cut(s)	64, 300
BshNI	GGYRCC	2 cut(s)	278, 416
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	257, 276, 297
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	4 cut(s)	187, 209, 277, 376
BsmBI	CGTCTC	3 cut(s)	187, 277, 376
BsnI	GGCC	2 cut(s)	64, 300
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	91, 339
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	172, 205, 262
BspANI	GGCC	2 cut(s)	64, 300
BspCNI	CTCAG	1 cut(s)	164
BspFNI	CGCG	4 cut(s)	172, 205, 223, 262
BspLI	GGNNCC	3 cut(s)	280, 301, 418
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	2 cut(s)	278, 416
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	91, 339
BssNI	GRCGYC	3 cut(s)	279, 294, 417
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	61, 135
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	3 cut(s)	279, 294, 417
BstC8I	GCNNGC	2 cut(s)	110, 298
BstDEI	CTNAG	1 cut(s)	151
BstDSI	CCRYGG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	4 cut(s)	172, 205, 223, 262
BstH2I	RGCGCY	2 cut(s)	282, 420
BstHHI	GCGC	6 cut(s)	172, 205, 223, 262, 281, 419
BstKTI	GATC	2 cut(s)	94, 342
BstMAI	GTCTC	4 cut(s)	187, 209, 277, 376
BstMBI	GATC	2 cut(s)	91, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 356
BstNI	CCWGG	2 cut(s)	61, 135
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	59, 133
BstUI	CGCG	4 cut(s)	172, 205, 223, 262
BstV1I	GCAGC	2 cut(s)	109, 152
BstXI	CCANNNNNNTGG	2 cut(s)	134, 310
BsuRI	GGCC	2 cut(s)	64, 300
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	110, 298
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	6 cut(s)	172, 205, 223, 262, 281, 419
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	63, 299, 313, 366
CseI	GACGC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	133
CviAII	CATG	3 cut(s)	310, 370, 451
DdeI	CTNAG	1 cut(s)	151
DinI	GGCGCC	2 cut(s)	280, 418
DpnI	GATC	2 cut(s)	93, 341
DpnII	GATC	2 cut(s)	91, 339
DraI	TTTAAA	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	313, 366
Eco53kI	GAGCTC	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	59, 133
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	399
EgeI	GGCGCC	2 cut(s)	280, 418
EheI	GGCGCC	2 cut(s)	280, 418
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	3 cut(s)	187, 277, 376
FaeI	CATG	3 cut(s)	313, 373, 454
FaiI	YATR	4 cut(s)	36, 311, 371, 452
FatI	CATG	3 cut(s)	309, 369, 450
Fnu4HI	GCNGC	3 cut(s)	98, 141, 206
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	98, 141, 206
GlaI	GCGC	6 cut(s)	171, 204, 222, 261, 280, 418
GluI	GCNGC	3 cut(s)	98, 141, 206
HaeII	RGCGCY	2 cut(s)	282, 420
HaeIII	GGCC	2 cut(s)	64, 300
HapII	CCGG	3 cut(s)	257, 276, 297
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	6 cut(s)	172, 205, 223, 262, 281, 419
Hin1I	GRCGYC	3 cut(s)	279, 294, 417
Hin1II	CATG	3 cut(s)	313, 373, 454
Hin6I	GCGC	6 cut(s)	170, 203, 221, 260, 279, 417
HinP1I	GCGC	6 cut(s)	170, 203, 221, 260, 279, 417
HinfI	GANTC	3 cut(s)	4, 229, 235
HpaII	CCGG	3 cut(s)	257, 276, 297
HphI	GGTGA	4 cut(s)	74, 310, 421, 436
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	187, 234, 404
Hpy188III	TCNNGA	2 cut(s)	337, 457
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	3 cut(s)	92, 121, 296
HpyAV	CCTTC	2 cut(s)	219, 331
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	108, 140, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 356
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	3 cut(s)	279, 294, 417
Hsp92II	CATG	3 cut(s)	313, 373, 454
HspAI	GCGC	6 cut(s)	170, 203, 221, 260, 279, 417
KasI	GGCGCC	2 cut(s)	278, 416
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	91, 339
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	2 cut(s)	109, 152
MabI	ACCWGGT	1 cut(s)	133
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	93, 341
MboI	GATC	2 cut(s)	91, 339
MboII	GAAGA	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	1 cut(s)	405
Mly113I	GGCGCC	2 cut(s)	279, 417
MnlI	CCTC	6 cut(s)	95, 160, 202, 326, 365, 452
MroNI	GCCGGC	1 cut(s)	296
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	3 cut(s)	257, 276, 297
MspR9I	CCNGG	2 cut(s)	61, 135
MvaI	CCWGG	2 cut(s)	61, 135
MvnI	CGCG	4 cut(s)	172, 205, 223, 262
MwoI	GCNNNNNNNGC	2 cut(s)	161, 356
NaeI	GCCGGC	1 cut(s)	298
NarI	GGCGCC	2 cut(s)	279, 417
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	91, 339
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	313, 373, 454
NlaIV	GGNNCC	3 cut(s)	280, 301, 418
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	229, 235
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	99, 142, 207
PluTI	GGCGCC	2 cut(s)	282, 420
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	59, 133
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	59, 133
PspN4I	GGNNCC	3 cut(s)	280, 301, 418
PspPI	GGNCC	4 cut(s)	63, 299, 313, 366
PstNI	CAGNNNCTG	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	3 cut(s)	98, 141, 206
Sau3AI	GATC	2 cut(s)	91, 339
Sau96I	GGNCC	4 cut(s)	63, 299, 313, 366
ScrFI	CCNGG	2 cut(s)	61, 135
SduI	GDGCHC	1 cut(s)	399
SexAI	ACCWGGT	1 cut(s)	133
SfoI	GGCGCC	2 cut(s)	280, 418
SinI	GGWCC	2 cut(s)	313, 366
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	3 cut(s)	172, 205, 262
SspDI	GGCGCC	2 cut(s)	278, 416
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	59, 133
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	4 cut(s)	17, 87, 123, 194
TasI	AATT	1 cut(s)	405
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	229, 235
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	97, 140
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	386, 427
Van91I	CCANNNNNTGG	1 cut(s)	456
VpaK11BI	GGWCC	2 cut(s)	313, 366
XapI	RAATTY	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.