RLG00000036446

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020051
Physical Location & Seq
Reverse (-)
80727233 .. 80729561
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036446

Sequence Viewer

Length: 1374 bp
ATGGCAGCCAAATGCGAAGTGAAGTTGTGGGTGAGCTGCTGGGTCGATAATGGAATTAAAGGCCTGAGAGCAATACGACGCGATTTTGGTCGGAAAGCTGGCTTCGCCTGCCGGGTTTGGGTTCGCTTACTGAAAGATTCAATCTTTCGCGTCTACTCTCGCTCTCGATCAGACCCTCTCTTCTTCTCGTTGTTCTCTCACGAAGCTGGCTTCGCCTGCCGGGTTTGGGTTCGCTTACTGAAAGATTCAATCTTTCGCGTCTACTCTCGCTCTCCCAGACCCTCGATCTCTTCTTGTCGTTCACCACTCACCAGGATGGATGTGCCAGCTGAAAGTGAGCAGTGGGTGAATCTTAATGTCGGAGGCAGAAAATTCTTGACAACCATTGATACGCTAACCCGGGAACCAAACTCAATGCTTGAGTCAATGTTTAGCGGGAGATACACATTGAAGGAGAAGAATGGATATGTGAAGATCGATAGAGATGGGTTTTATTTTGGATACATACTTAGGTGGCTGAGAGATGGGGTGGTTCCCATATTGGAACCAATGTTTTACCCAGAGCTGGCAATTGAGGCAGATTACTACCAATTGCGTGGCCTGAAGGCAGCACTTCAGGAGGTTATGTTACGATGCAATGCCGACTTGTCAAGAAAGGAAGTGATCACAAGTATGCAGGCTGGGAATAAAACTTTCACAGGTTTCAATTTCTCAGGTCAGGATTTGTCAAAGTTGGACCTGGCAAAGGCAGATTTCACTGGAGGGTGTCTGCATTCTGTAAATTTTGAGGGAGCAAATCTTAGACATGCTAAGCTGCGAAATTGTGATGCGCTGAATGCTGTGTTTGATAATTCAACATTGGAGTTGAGTCTTCTGTCCAAGGGAAACTTTTCTAGTGCATCCTTTGTTGCTGCTCATTTGCAGAGATCTGACATGACAGGTGCCACTCTTGTTTCATCAAACATGACAAGAGCCAACCTTCGGGAGGCAGAGGCCAGGAAATGCAAGTTCAATGGGGCAAATTGTGAAGGTTGTATCTTCTATTCGGCAAAACTCAGTGAAGGATCATTTGAAGAGGCCAATTTGTCTGATGCAGTCCTTAGCAATGCAGATTTATCGGGTTGTAGATTGTTACATGCTAATCTTCAAAATGCTAACCTGCAGGACGCCAATTTAACTGATGCGAAGCTCTGTGCTGCAAATCTATCTGGCTGTAGATTCTCAAGGACTAACCTCCGAAATGCAAATCTGGAGGGCGCAAATTTAACAAATGCCAATCTGAGTGAAGCAAACCTTGAGAATGCCAACATGAGGAATGCCATACTAAGTGCTGCCAACTACCTGGTGGCCTTAAATAGAGGGGCCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

458

Amino Acids

50.84

Weight (kDa)

9.14

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 116 - 201 6e-15 BTB/POZ domain
Pentapeptide PF00805 296 - 330 1e-05 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 325 - 364 1.3e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 343 - 417 3.5e-12 Pentapeptide repeat region
Pentapeptide PF00805 366 - 404 1.1e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 405 - 443 4e-13 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020051)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036446
rosa_multiflora Rmu_sc0000818.1_g000016 Rmu_sc0015038.1_g000003
rosa_samantha Rh5AG486400 Rh5BG506700 Rh5CG530200
rosa_wichuraiana Rw5G045140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1167
AccB1I GGYRCC 1 cut(s) 941
AccI GTMKAC 2 cut(s) 153, 261
AccII CGCG 3 cut(s) 81, 150, 258
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 1072
AcsI RAATTY 3 cut(s) 371, 781, 1261
AcuI CTGAAG 2 cut(s) 599, 623
AcyI GRCGYC 1 cut(s) 1167
AfiI CCNNNNNNNGG 7 cut(s) 118, 226, 565, 745, 981, 985, 1311
AgsI TTSAA 8 cut(s) 141, 249, 451, 706, 855, 1012, 1073, 1148
AjnI CCWGG 4 cut(s) 311, 738, 995, 1341
AluBI AGCT 7 cut(s) 36, 98, 206, 329, 565, 814, 1189
AluI AGCT 7 cut(s) 36, 98, 206, 329, 565, 814, 1189
AlwI GGATC 1 cut(s) 1072
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 6 cut(s) 61, 598, 993, 1077, 1347, 1362
ApeKI GCWGC 7 cut(s) 5, 36, 608, 814, 911, 1196, 1331
ApoI RAATTY 3 cut(s) 371, 781, 1261
Asp700I GAANNNNTTC 1 cut(s) 889
AspLEI GCGC 2 cut(s) 832, 1259
AspS9I GGNCC 2 cut(s) 736, 1362
AsuC2I CCSGG 4 cut(s) 113, 221, 400, 401
AsuHPI GGTGA 4 cut(s) 43, 294, 301, 358
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 736
BanI GGYRCC 1 cut(s) 941
BbsI GAAGAC 1 cut(s) 863
BbvI GCAGC 7 cut(s) 17, 23, 620, 801, 898, 1183, 1318
BccI CCATC 4 cut(s) 310, 479, 518, 1373
BcgI CGANNNNNNTGC 2 cut(s) 1098, 1132
BciT130I CCWGG 4 cut(s) 313, 740, 997, 1343
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 4 cut(s) 113, 221, 400, 401
BfaI CTAG 1 cut(s) 894
BfmI CTRYAG 2 cut(s) 1160, 1213
BfuAI ACCTGC 1 cut(s) 1167
BfuI GTATCC 1 cut(s) 494
BglII AGATCT 1 cut(s) 926
BisI GCNGC 7 cut(s) 6, 37, 609, 815, 912, 1197, 1332
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 7 cut(s) 7, 38, 610, 816, 913, 1198, 1333
Bme1390I CCNGG 8 cut(s) 113, 221, 313, 400, 401, 740, 997, 1343
Bme18I GGWCC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 736, 1362
BmiI GGNNCC 5 cut(s) 405, 534, 546, 943, 1363
BmrFI CCNGG 8 cut(s) 113, 221, 313, 400, 401, 740, 997, 1343
BmsI GCATC 5 cut(s) 623, 817, 908, 1081, 1171
BpiI GAAGAC 1 cut(s) 863
BpmI CTGGAG 2 cut(s) 780, 1271
Bpu10I CCTNAGC 1 cut(s) 1100
Bpu1102I GCTNAGC 1 cut(s) 810
BpuEI CTTGAG 3 cut(s) 440, 1207, 1316
BpuMI CCSGG 4 cut(s) 113, 221, 400, 401
Bsa29I ATCGAT 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 1167
BsaJI CCNNGG 2 cut(s) 399, 879
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 7 cut(s) 118, 226, 565, 745, 981, 985, 1311
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 2 cut(s) 643, 1111
BseBI CCWGG 4 cut(s) 313, 740, 997, 1343
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 399, 879
BseGI GGATG 3 cut(s) 321, 325, 899
BseLI CCNNNNNNNGG 7 cut(s) 118, 226, 565, 745, 981, 985, 1311
BseMI GCAATG 2 cut(s) 643, 1111
BseMII CTCAG 5 cut(s) 56, 509, 726, 1069, 1271
BseNI ACTGG 1 cut(s) 763
BseXI GCAGC 7 cut(s) 17, 23, 620, 801, 898, 1183, 1318
BseYI CCCAGC 2 cut(s) 39, 680
Bsh1236I CGCG 3 cut(s) 81, 150, 258
BshFI GGCC 6 cut(s) 63, 600, 995, 1079, 1349, 1364
BshNI GGYRCC 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 3 cut(s) 112, 220, 400
BslI CCNNNNNNNGG 7 cut(s) 118, 226, 565, 745, 981, 985, 1311
BsmI GAATGC 4 cut(s) 772, 841, 1306, 1321
BsnI GGCC 6 cut(s) 63, 600, 995, 1079, 1349, 1364
BsoBI CYCGRG 1 cut(s) 399
Bsp143I GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
Bsp1720I GCTNAGC 1 cut(s) 810
BspACI CCGC 1 cut(s) 435
BspANI GGCC 6 cut(s) 63, 600, 995, 1079, 1349, 1364
BspCNI CTCAG 5 cut(s) 57, 510, 725, 1068, 1272
BspDI ATCGAT 1 cut(s) 477
BspFNI CGCG 3 cut(s) 81, 150, 258
BspLI GGNNCC 5 cut(s) 405, 534, 546, 943, 1363
BspMAI CTGCAG 1 cut(s) 1164
BspMI ACCTGC 1 cut(s) 1167
BspPI GGATC 1 cut(s) 1072
BspT107I GGYRCC 1 cut(s) 941
BsrDI GCAATG 2 cut(s) 643, 1111
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 399, 879
BssMI GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
BssNI GRCGYC 1 cut(s) 1167
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 4 cut(s) 313, 740, 997, 1343
Bst6I CTCTTC 3 cut(s) 185, 295, 1068
BstACI GRCGYC 1 cut(s) 1167
BstC8I GCNNGC 7 cut(s) 100, 109, 208, 217, 327, 567, 678
BstENI CCTNNNNNAGG 2 cut(s) 743, 983
BstF5I GGATG 3 cut(s) 321, 325, 899
BstFNI CGCG 3 cut(s) 81, 150, 258
BstHHI GCGC 2 cut(s) 832, 1259
BstKTI GATC 6 cut(s) 170, 288, 477, 666, 929, 1067
BstMBI GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
BstMWI GCNNNNNNNGC 6 cut(s) 104, 108, 212, 216, 575, 836
BstNI CCWGG 4 cut(s) 313, 740, 997, 1343
BstNSI RCATGY 2 cut(s) 809, 1139
BstSCI CCNGG 8 cut(s) 111, 219, 311, 398, 399, 738, 995, 1341
BstSFI CTRYAG 2 cut(s) 1160, 1213
BstUI CGCG 3 cut(s) 81, 150, 258
BstV1I GCAGC 7 cut(s) 17, 23, 620, 801, 898, 1183, 1318
BstV2I GAAGAC 1 cut(s) 863
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 2 cut(s) 596, 1342
BstYI RGATCY 1 cut(s) 926
Bsu15I ATCGAT 1 cut(s) 477
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 6 cut(s) 63, 600, 995, 1079, 1349, 1364
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 3 cut(s) 321, 325, 899
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 3 cut(s) 347, 756, 1063
BveI ACCTGC 1 cut(s) 1167
Cac8I GCNNGC 7 cut(s) 100, 109, 208, 217, 327, 567, 678
CfoI GCGC 2 cut(s) 832, 1259
Cfr13I GGNCC 2 cut(s) 736, 1362
Cfr9I CCCGGG 1 cut(s) 399
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 4 cut(s) 87, 139, 247, 1175
CsiI ACCWGGT 1 cut(s) 1341
CviAII CATG 5 cut(s) 806, 934, 964, 1136, 1309
DpnI GATC 6 cut(s) 169, 287, 476, 665, 928, 1066
DpnII GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
Eam1104I CTCTTC 3 cut(s) 185, 295, 1068
EarI CTCTTC 3 cut(s) 185, 295, 1068
Eco130I CCWWGG 1 cut(s) 879
Eco147I AGGCCT 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 736
Eco57I CTGAAG 2 cut(s) 599, 623
Eco88I CYCGRG 1 cut(s) 399
EcoNI CCTNNNNNAGG 2 cut(s) 743, 983
EcoRII CCWGG 4 cut(s) 311, 738, 995, 1341
EcoT14I CCWWGG 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 5 cut(s) 809, 937, 967, 1139, 1312
FalI AAGNNNNNCTT 4 cut(s) 872, 904, 1278, 1310
FatI CATG 5 cut(s) 805, 933, 963, 1135, 1308
FauI CCCGC 1 cut(s) 428
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 2 cut(s) 153, 261
Fnu4HI GCNGC 7 cut(s) 6, 37, 609, 815, 912, 1197, 1332
FokI GGATG 3 cut(s) 328, 332, 886
Fsp4HI GCNGC 7 cut(s) 6, 37, 609, 815, 912, 1197, 1332
FspBI CTAG 1 cut(s) 894
GlaI GCGC 2 cut(s) 831, 1258
GluI GCNGC 7 cut(s) 6, 37, 609, 815, 912, 1197, 1332
GsaI CCCAGC 2 cut(s) 43, 684
GsuI CTGGAG 2 cut(s) 780, 1271
HaeIII GGCC 6 cut(s) 63, 600, 995, 1079, 1349, 1364
HapII CCGG 3 cut(s) 112, 220, 400
HgaI GACGC 4 cut(s) 87, 139, 247, 1175
HhaI GCGC 2 cut(s) 832, 1259
Hin1I GRCGYC 1 cut(s) 1167
Hin1II CATG 5 cut(s) 809, 937, 967, 1139, 1312
Hin6I GCGC 2 cut(s) 830, 1257
HinP1I GCGC 2 cut(s) 830, 1257
HinfI GANTC 6 cut(s) 137, 245, 349, 422, 868, 1218
HpaII CCGG 3 cut(s) 112, 220, 400
HphI GGTGA 4 cut(s) 43, 294, 301, 358
Hpy166II GTNNAC 3 cut(s) 154, 262, 302
Hpy188I TCNGA 7 cut(s) 93, 172, 362, 931, 1090, 1238, 1281
Hpy188III TCNNGA 8 cut(s) 165, 200, 376, 617, 651, 719, 983, 1250
Hpy8I GTNNAC 3 cut(s) 154, 262, 302
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 5 cut(s) 445, 598, 989, 1022, 1055
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 108, 212, 216, 575, 836
Hsp92I GRCGYC 1 cut(s) 1167
Hsp92II CATG 5 cut(s) 809, 937, 967, 1139, 1312
HspAI GCGC 2 cut(s) 830, 1257
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
LmnI GCTCC 1 cut(s) 791
Lsp1109I GCAGC 7 cut(s) 17, 23, 620, 801, 898, 1183, 1318
LweI GCATC 5 cut(s) 623, 817, 908, 1081, 1171
MabI ACCWGGT 1 cut(s) 1341
MaeI CTAG 1 cut(s) 894
MaeIII GTNAC 2 cut(s) 627, 1131
MalI GATC 6 cut(s) 169, 287, 476, 665, 928, 1066
MboI GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
MboII GAAGA 9 cut(s) 172, 175, 282, 469, 484, 863, 1030, 1085, 1136
MfeI CAATTG 2 cut(s) 570, 590
MflI RGATCY 1 cut(s) 926
MlyI GAGTC 2 cut(s) 431, 877
MmeI TCCRAC 3 cut(s) 71, 340, 714
MroXI GAANNNNTTC 1 cut(s) 889
MseI TTAA 5 cut(s) 57, 354, 1175, 1265, 1352
MslI CAYNNNNRTG 2 cut(s) 314, 671
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 112, 220, 400
MspR9I CCNGG 8 cut(s) 113, 221, 313, 400, 401, 740, 997, 1343
MunI CAATTG 2 cut(s) 570, 590
Mva1269I GAATGC 4 cut(s) 772, 841, 1306, 1321
MvaI CCWGG 4 cut(s) 313, 740, 997, 1343
MvnI CGCG 3 cut(s) 81, 150, 258
MwoI GCNNNNNNNGC 6 cut(s) 104, 108, 212, 216, 575, 836
NciI CCSGG 4 cut(s) 113, 221, 400, 401
NdeII GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
NlaIII CATG 5 cut(s) 809, 937, 967, 1139, 1312
NlaIV GGNNCC 5 cut(s) 405, 534, 546, 943, 1363
NspI RCATGY 2 cut(s) 809, 1139
PceI AGGCCT 1 cut(s) 63
PctI GAATGC 4 cut(s) 772, 841, 1306, 1321
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 4 cut(s) 137, 245, 349, 1218
PkrI GCNGC 7 cut(s) 7, 38, 610, 816, 913, 1198, 1333
PleI GAGTC 2 cut(s) 430, 876
PpsI GAGTC 2 cut(s) 430, 876
Psp6I CCWGG 4 cut(s) 311, 738, 995, 1341
PspFI CCCAGC 2 cut(s) 39, 680
PspGI CCWGG 4 cut(s) 311, 738, 995, 1341
PspN4I GGNNCC 5 cut(s) 405, 534, 546, 943, 1363
PspPI GGNCC 2 cut(s) 736, 1362
PstI CTGCAG 1 cut(s) 1164
PsuI RGATCY 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 329
RseI CAYNNNNRTG 2 cut(s) 314, 671
SaqAI TTAA 5 cut(s) 57, 354, 1175, 1265, 1352
SatI GCNGC 7 cut(s) 6, 37, 609, 815, 912, 1197, 1332
Sau3AI GATC 6 cut(s) 167, 285, 474, 663, 926, 1064
Sau96I GGNCC 2 cut(s) 736, 1362
SbfI CCTGCAGG 1 cut(s) 1164
SchI GAGTC 2 cut(s) 431, 877
ScrFI CCNGG 8 cut(s) 113, 221, 313, 400, 401, 740, 997, 1343
SdaI CCTGCAGG 1 cut(s) 1164
SexAI ACCWGGT 1 cut(s) 1341
SfaNI GCATC 5 cut(s) 623, 817, 908, 1081, 1171
SfcI CTRYAG 2 cut(s) 1160, 1213
SinI GGWCC 1 cut(s) 736
SmaI CCCGGG 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 314, 671
SmlI CTYRAG 3 cut(s) 419, 1222, 1295
SmoI CTYRAG 3 cut(s) 419, 1222, 1295
Sse8387I CCTGCAGG 1 cut(s) 1164
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 1 cut(s) 435
SspMI CTAG 1 cut(s) 894
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 8 cut(s) 111, 219, 311, 398, 399, 738, 995, 1341
StyI CCWWGG 1 cut(s) 879
TaqI TCGA 4 cut(s) 45, 166, 284, 477
TfiI GAWTC 4 cut(s) 137, 245, 349, 1218
Tru1I TTAA 5 cut(s) 57, 354, 1175, 1265, 1352
Tru9I TTAA 5 cut(s) 57, 354, 1175, 1265, 1352
TscAI CASTG 3 cut(s) 347, 763, 1063
TseI GCWGC 7 cut(s) 5, 36, 608, 814, 911, 1196, 1331
TspDTI ATGAA 1 cut(s) 945
TspMI CCCGGG 1 cut(s) 399
TspRI CASTG 3 cut(s) 347, 763, 1063
VpaK11BI GGWCC 1 cut(s) 736
XagI CCTNNNNNAGG 2 cut(s) 743, 983
XapI RAATTY 3 cut(s) 371, 781, 1261
XceI RCATGY 2 cut(s) 809, 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 1342
XmaI CCCGGG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 153, 261
XmnI GAANNNNTTC 1 cut(s) 889
XspI CTAG 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.