Rw5G045140

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0020051
Physical Location & Seq
Reverse (-)
78983478 .. 78985693
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G045140.1

Sequence Viewer

Length: 1320 bp
ATGGCAGCCAAATGCGAAGTGAAGTTGTGGGTCGATAATGGAATTAAAGGCCTGAGAGCAATACGACGCTATTTTGGTCGGAAAGATTCAATCTTTCGCGTCTACTCTCGCTCTCCCAGACCCTCTCTTCTTCTCGTTGTTCTCTCACGAAGCTGGCTTCGCCTGCCGGGTTTGGGTTCGCTTACTGAAAGATTCAATCTTTCGCGTCTACTCTCGCTCTCTCAGACCCTCTCTTCTTCTCGTTGTTCACCACTCACCAGGATGGATGTGCCAGCTGAAAGTGATCAGTGGGTCAATCTTAATGTTGGAGGCAGAAAATTCTTGACAACCATTGATACGCTCACCCGGGAGCCAAACTCAATGCTTGAGTCCATGTTTAGCGGGAGATACACATTGAAGGAGAAGAATGGATATGTGATGATCGACAGAGATGGGTTTTATTTTGGATACATACTTAGGTGGCTGAGAGATGGGGTGGTTCCCATATTGGAACCAATGTTTTACCCAGAGCTGGCAATTGAGGCAGATTACTACCAATTGCGTGGCCTGAAGGCAGCACTTCAGGAGGTTATGTTACGATGCAATGCCGACTTGTCAAGAAAGGAAGTGATCACAAGTATGCAGGCTGGGGATAAAACTTTCACAGGTTTCAATTTCTCAGGTCAGGATTTGTCAAAGTTGAACCTGGAAAGGGCAGATTTTACTGGAGGGTGTCTGCATTCTGTAAATTTTGAGGGGGCAAATCTTAGACGTGCTAAGCTGCGAAATTGTGATGCGCTGAATGCTGTGTTTGATAATTCAACAATGGAGTTGAGTCTTCTGTCCAAGGGAAACTTTTCTAGTGCATCCTTTGTTGGTGCTCATTTGCAGAGATCTGACATGACAGGTGCCACTCTTGTTTCATCAAACATGACAAGAGCCAACCTTTGGGAGGTAGAGGCCAGGAAATGCAAGTTCAATGGGGCAAATTGTGAAGGTGGTATCTTCAATGGGGCAAAACTCAGTGAAGTATCATTTGAAGAGGCCAATTTGTCTGATGCAGTCCTTAGCAATGCCGATTTATCGGGTTGTACATTGTTACATGCTAATCTTCAAAATGCTAACCTGCAGGATGCAAATTTAACTGATGCGAAGCTCTGTGCTGCAAATCTATCTGGCTGTAGATTCTCAAGGACTAACCTCCGAAATGCAAATCTGGAGGGCGCAAATTTAACGAATGCCAATCTGAGTGAAGCAAACCTTGAGAATGCCAACATGAGGAATGCCATACTAAGTGCTGCCAACTACCTGGTGGCCTTAAATAGAGGGGCCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

439

Amino Acids

48.57

Weight (kDa)

8.96

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 98 - 183 1.2e-15 BTB/POZ domain
Pentapeptide PF00805 218 - 251 2.7e-07 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 278 - 310 2.9e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 317 - 356 8.7e-09 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 329 - 399 3.4e-12 Pentapeptide repeat region
Pentapeptide PF00805 348 - 386 1.3e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 387 - 425 3.7e-13 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020051)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036446
rosa_multiflora Rmu_sc0000818.1_g000016 Rmu_sc0015038.1_g000003
rosa_samantha Rh5AG486400 Rh5BG506700 Rh5CG530200
rosa_wichuraiana Rw5G045140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1113
AccB1I GGYRCC 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 927
AccI GTMKAC 2 cut(s) 102, 208
AccII CGCG 2 cut(s) 99, 205
AciI CCGC 1 cut(s) 381
AcsI RAATTY 4 cut(s) 317, 727, 1117, 1207
AcuI CTGAAG 2 cut(s) 545, 569
AfaI GTAC 1 cut(s) 1072
AfiI CCNNNNNNNGG 6 cut(s) 173, 511, 691, 927, 931, 1257
AjiI CACGTC 1 cut(s) 752
AjnI CCWGG 4 cut(s) 257, 684, 941, 1287
AluBI AGCT 5 cut(s) 153, 275, 511, 760, 1135
AluI AGCT 5 cut(s) 153, 275, 511, 760, 1135
Alw21I GWGCWC 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 6 cut(s) 49, 544, 939, 1023, 1293, 1308
ApeKI GCWGC 5 cut(s) 5, 554, 760, 1142, 1277
ApoI RAATTY 4 cut(s) 317, 727, 1117, 1207
Asp700I GAANNNNTTC 1 cut(s) 835
AspLEI GCGC 2 cut(s) 778, 1205
AspS9I GGNCC 1 cut(s) 1308
AsuC2I CCSGG 3 cut(s) 168, 346, 347
AsuHPI GGTGA 3 cut(s) 240, 247, 334
AvaI CYCGRG 1 cut(s) 345
BanI GGYRCC 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 5 cut(s) 17, 566, 747, 1129, 1264
BccI CCATC 4 cut(s) 256, 425, 464, 1319
BciT130I CCWGG 4 cut(s) 259, 686, 943, 1289
BciVI GTATCC 1 cut(s) 440
BclI TGATCA 2 cut(s) 283, 609
BcnI CCSGG 3 cut(s) 168, 346, 347
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 2 cut(s) 1106, 1159
BfuAI ACCTGC 1 cut(s) 1113
BfuI GTATCC 1 cut(s) 440
BglII AGATCT 1 cut(s) 872
BisI GCNGC 5 cut(s) 6, 555, 761, 1143, 1278
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 5 cut(s) 7, 556, 762, 1144, 1279
Bme1390I CCNGG 7 cut(s) 168, 259, 346, 347, 686, 943, 1289
BmeT110I CYCGRG 1 cut(s) 345
BmgBI CACGTC 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 1308
BmiI GGNNCC 5 cut(s) 351, 480, 492, 889, 1309
BmrFI CCNGG 7 cut(s) 168, 259, 346, 347, 686, 943, 1289
BmsI GCATC 6 cut(s) 569, 763, 854, 1027, 1102, 1117
BpiI GAAGAC 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 2 cut(s) 726, 1217
Bpu10I CCTNAGC 1 cut(s) 1046
Bpu1102I GCTNAGC 1 cut(s) 756
BpuEI CTTGAG 3 cut(s) 386, 1153, 1262
BpuMI CCSGG 3 cut(s) 168, 346, 347
BsaJI CCNNGG 2 cut(s) 345, 825
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 6 cut(s) 173, 511, 691, 927, 931, 1257
Bse1I ACTGG 1 cut(s) 709
Bse3DI GCAATG 2 cut(s) 589, 1057
BseBI CCWGG 4 cut(s) 259, 686, 943, 1289
BseDI CCNNGG 2 cut(s) 345, 825
BseGI GGATG 4 cut(s) 267, 271, 845, 1117
BseLI CCNNNNNNNGG 6 cut(s) 173, 511, 691, 927, 931, 1257
BseMI GCAATG 2 cut(s) 589, 1057
BseMII CTCAG 6 cut(s) 44, 236, 455, 672, 1015, 1217
BseNI ACTGG 1 cut(s) 709
BseXI GCAGC 5 cut(s) 17, 566, 747, 1129, 1264
BseYI CCCAGC 1 cut(s) 626
Bsh1236I CGCG 2 cut(s) 99, 205
BshFI GGCC 6 cut(s) 51, 546, 941, 1025, 1295, 1310
BshNI GGYRCC 1 cut(s) 887
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 2 cut(s) 167, 346
BslI CCNNNNNNNGG 6 cut(s) 173, 511, 691, 927, 931, 1257
BsmI GAATGC 5 cut(s) 718, 787, 1222, 1252, 1267
BsnI GGCC 6 cut(s) 51, 546, 941, 1025, 1295, 1310
BsoBI CYCGRG 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 1070
Bsp143I GATC 4 cut(s) 283, 420, 609, 872
Bsp1720I GCTNAGC 1 cut(s) 756
BspACI CCGC 1 cut(s) 381
BspANI GGCC 6 cut(s) 51, 546, 941, 1025, 1295, 1310
BspCNI CTCAG 6 cut(s) 45, 235, 456, 671, 1014, 1218
BspFNI CGCG 2 cut(s) 99, 205
BspLI GGNNCC 5 cut(s) 351, 480, 492, 889, 1309
BspMAI CTGCAG 1 cut(s) 1110
BspMI ACCTGC 1 cut(s) 1113
BspT107I GGYRCC 1 cut(s) 887
BsrDI GCAATG 2 cut(s) 589, 1057
BsrGI TGTACA 1 cut(s) 1070
BsrI ACTGG 1 cut(s) 709
BssECI CCNNGG 2 cut(s) 345, 825
BssMI GATC 4 cut(s) 283, 420, 609, 872
BssT1I CCWWGG 1 cut(s) 825
Bst2UI CCWGG 4 cut(s) 259, 686, 943, 1289
Bst6I CTCTTC 3 cut(s) 132, 238, 1014
BstAUI TGTACA 1 cut(s) 1070
BstC8I GCNNGC 5 cut(s) 155, 164, 273, 513, 624
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 4 cut(s) 267, 271, 845, 1117
BstFNI CGCG 2 cut(s) 99, 205
BstHHI GCGC 2 cut(s) 778, 1205
BstKTI GATC 4 cut(s) 286, 423, 612, 875
BstMBI GATC 4 cut(s) 283, 420, 609, 872
BstMWI GCNNNNNNNGC 4 cut(s) 159, 163, 521, 782
BstNI CCWGG 4 cut(s) 259, 686, 943, 1289
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 7 cut(s) 166, 257, 344, 345, 684, 941, 1287
BstSFI CTRYAG 2 cut(s) 1106, 1159
BstUI CGCG 2 cut(s) 99, 205
BstV1I GCAGC 5 cut(s) 17, 566, 747, 1129, 1264
BstV2I GAAGAC 1 cut(s) 809
BstX2I RGATCY 1 cut(s) 872
BstXI CCANNNNNNTGG 2 cut(s) 542, 1288
BstYI RGATCY 1 cut(s) 872
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 6 cut(s) 51, 546, 941, 1025, 1295, 1310
BtrI CACGTC 1 cut(s) 752
BtsCI GGATG 4 cut(s) 267, 271, 845, 1117
BtsIMutI CAGTG 2 cut(s) 293, 1009
BveI ACCTGC 1 cut(s) 1113
Cac8I GCNNGC 5 cut(s) 155, 164, 273, 513, 624
CfoI GCGC 2 cut(s) 778, 1205
Cfr13I GGNCC 1 cut(s) 1308
Cfr9I CCCGGG 1 cut(s) 345
CseI GACGC 3 cut(s) 75, 88, 194
CsiI ACCWGGT 1 cut(s) 1287
Csp6I GTAC 1 cut(s) 1071
CviAII CATG 5 cut(s) 373, 880, 910, 1082, 1255
CviQI GTAC 1 cut(s) 1071
DpnI GATC 4 cut(s) 285, 422, 611, 874
DpnII GATC 4 cut(s) 283, 420, 609, 872
Eam1104I CTCTTC 3 cut(s) 132, 238, 1014
EarI CTCTTC 3 cut(s) 132, 238, 1014
Eco130I CCWWGG 1 cut(s) 825
Eco147I AGGCCT 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 545, 569
Eco88I CYCGRG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoRII CCWGG 4 cut(s) 257, 684, 941, 1287
EcoT14I CCWWGG 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 825
FaeI CATG 5 cut(s) 376, 883, 913, 1085, 1258
FalI AAGNNNNNCTT 4 cut(s) 818, 850, 1224, 1256
FatI CATG 5 cut(s) 372, 879, 909, 1081, 1254
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 2 cut(s) 283, 609
FblI GTMKAC 2 cut(s) 102, 208
Fnu4HI GCNGC 5 cut(s) 6, 555, 761, 1143, 1278
FokI GGATG 4 cut(s) 274, 278, 832, 1124
Fsp4HI GCNGC 5 cut(s) 6, 555, 761, 1143, 1278
FspBI CTAG 1 cut(s) 840
GlaI GCGC 2 cut(s) 777, 1204
GluI GCNGC 5 cut(s) 6, 555, 761, 1143, 1278
GsaI CCCAGC 1 cut(s) 630
GsuI CTGGAG 2 cut(s) 726, 1217
HaeIII GGCC 6 cut(s) 51, 546, 941, 1025, 1295, 1310
HapII CCGG 2 cut(s) 167, 346
HgaI GACGC 3 cut(s) 75, 88, 194
HhaI GCGC 2 cut(s) 778, 1205
Hin1II CATG 5 cut(s) 376, 883, 913, 1085, 1258
Hin6I GCGC 2 cut(s) 776, 1203
HinP1I GCGC 2 cut(s) 776, 1203
HinfI GANTC 5 cut(s) 86, 192, 368, 814, 1164
HpaII CCGG 2 cut(s) 167, 346
HphI GGTGA 3 cut(s) 240, 247, 334
Hpy166II GTNNAC 3 cut(s) 103, 209, 248
Hpy188I TCNGA 6 cut(s) 81, 225, 877, 1036, 1184, 1227
Hpy188III TCNNGA 6 cut(s) 147, 322, 563, 597, 665, 1196
Hpy8I GTNNAC 3 cut(s) 103, 209, 248
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 391, 544, 968
HpyCH4IV ACGT 1 cut(s) 751
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 163, 521, 782
HpySE526I ACGT 1 cut(s) 751
Hsp92II CATG 5 cut(s) 376, 883, 913, 1085, 1258
HspAI GCGC 2 cut(s) 776, 1203
Ksp22I TGATCA 2 cut(s) 283, 609
Kzo9I GATC 4 cut(s) 283, 420, 609, 872
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 5 cut(s) 17, 566, 747, 1129, 1264
LweI GCATC 6 cut(s) 569, 763, 854, 1027, 1102, 1117
MabI ACCWGGT 1 cut(s) 1287
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 751
MaeIII GTNAC 2 cut(s) 573, 1077
MalI GATC 4 cut(s) 285, 422, 611, 874
MboI GATC 4 cut(s) 283, 420, 609, 872
MboII GAAGA 9 cut(s) 119, 122, 225, 228, 415, 809, 976, 1031, 1082
MfeI CAATTG 2 cut(s) 516, 536
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 1 cut(s) 862
MlyI GAGTC 2 cut(s) 377, 823
MmeI TCCRAC 2 cut(s) 59, 286
MroXI GAANNNNTTC 1 cut(s) 835
MseI TTAA 5 cut(s) 45, 300, 1121, 1211, 1298
MslI CAYNNNNRTG 2 cut(s) 260, 617
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 2 cut(s) 167, 346
MspR9I CCNGG 7 cut(s) 168, 259, 346, 347, 686, 943, 1289
MunI CAATTG 2 cut(s) 516, 536
Mva1269I GAATGC 5 cut(s) 718, 787, 1222, 1252, 1267
MvaI CCWGG 4 cut(s) 259, 686, 943, 1289
MvnI CGCG 2 cut(s) 99, 205
MwoI GCNNNNNNNGC 4 cut(s) 159, 163, 521, 782
NciI CCSGG 3 cut(s) 168, 346, 347
NdeII GATC 4 cut(s) 283, 420, 609, 872
NlaIII CATG 5 cut(s) 376, 883, 913, 1085, 1258
NlaIV GGNNCC 5 cut(s) 351, 480, 492, 889, 1309
NspI RCATGY 1 cut(s) 1085
PceI AGGCCT 1 cut(s) 51
PctI GAATGC 5 cut(s) 718, 787, 1222, 1252, 1267
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 86, 192, 1164
PflMI CCANNNNNTGG 1 cut(s) 927
PkrI GCNGC 5 cut(s) 7, 556, 762, 1144, 1279
PleI GAGTC 2 cut(s) 376, 822
PpsI GAGTC 2 cut(s) 376, 822
Psp6I CCWGG 4 cut(s) 257, 684, 941, 1287
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 4 cut(s) 257, 684, 941, 1287
PspN4I GGNNCC 5 cut(s) 351, 480, 492, 889, 1309
PspPI GGNCC 1 cut(s) 1308
PstI CTGCAG 1 cut(s) 1110
PsuI RGATCY 1 cut(s) 872
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 1072
RsaNI GTAC 1 cut(s) 1071
RseI CAYNNNNRTG 2 cut(s) 260, 617
SaqAI TTAA 5 cut(s) 45, 300, 1121, 1211, 1298
SatI GCNGC 5 cut(s) 6, 555, 761, 1143, 1278
Sau3AI GATC 4 cut(s) 283, 420, 609, 872
Sau96I GGNCC 1 cut(s) 1308
SbfI CCTGCAGG 1 cut(s) 1110
SchI GAGTC 2 cut(s) 377, 823
ScrFI CCNGG 7 cut(s) 168, 259, 346, 347, 686, 943, 1289
SdaI CCTGCAGG 1 cut(s) 1110
SduI GDGCHC 1 cut(s) 862
SexAI ACCWGGT 1 cut(s) 1287
SfaNI GCATC 6 cut(s) 569, 763, 854, 1027, 1102, 1117
SfcI CTRYAG 2 cut(s) 1106, 1159
SmaI CCCGGG 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 260, 617
SmlI CTYRAG 3 cut(s) 365, 1168, 1241
SmoI CTYRAG 3 cut(s) 365, 1168, 1241
Sse8387I CCTGCAGG 1 cut(s) 1110
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 840
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 7 cut(s) 166, 257, 344, 345, 684, 941, 1287
StyI CCWWGG 1 cut(s) 825
TaiI ACGT 1 cut(s) 754
TaqI TCGA 2 cut(s) 33, 423
TatI WGTACW 1 cut(s) 1070
TfiI GAWTC 3 cut(s) 86, 192, 1164
Tru1I TTAA 5 cut(s) 45, 300, 1121, 1211, 1298
Tru9I TTAA 5 cut(s) 45, 300, 1121, 1211, 1298
TscAI CASTG 2 cut(s) 293, 1009
TseI GCWGC 5 cut(s) 5, 554, 760, 1142, 1277
TspDTI ATGAA 1 cut(s) 891
TspMI CCCGGG 1 cut(s) 345
TspRI CASTG 2 cut(s) 293, 1009
Van91I CCANNNNNTGG 1 cut(s) 927
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 4 cut(s) 317, 727, 1117, 1207
XceI RCATGY 1 cut(s) 1085
XcmI CCANNNNNNNNNTGG 1 cut(s) 1288
XmaI CCCGGG 1 cut(s) 345
XmiI GTMKAC 2 cut(s) 102, 208
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.