Rh5BG506700

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0020051
Physical Location & Seq
Reverse (-)
80427724 .. 80430263
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG506700.1

Sequence Viewer

Length: 1059 bp
ATGGATGTGCCAGCTGAAAGTGATCAGTGGGTCAATCTTAATGTTGGAGGCAGAAAATTCTTGACAACCATTGATACGCTCACCCGGGAGCCAAACTCAATGCTTGAGTCCATGTTTAGCGGGAGATACACATTGAAGGAGAAGAATGGATATGTGATGATCGACAGAGATGGGTTTTATTTTGGATACATACTTAGGTGGCTGAGAGATGGGGTGGTTCCCATATTGGAACCAATGTTTTACCCAGAGCTGGCAATTGAGGCAGATTACTACCAATTGCATGGCCTGAAGGCAGCACTTCAGGAGGTTATGTTACGATGCAATGCCGACTTGTCAAGAAAGGAAGTGATCACAAGTATTCAGGCTGGGGATAAAACTTTCACAGGTTTCAATTTCTCTGGTCAGGATTTGTCAAAGTTGGACCTGGAAAGGGCAGATTTTACTGGAGGGTGTCTGCATTCTGTAAATTTTCAAGGAGCAAATCTTAGACATGCTAAGCTGCGAAATTGTGATGCGCTGAATGCTGTGTTTGATAATTCAACATTGGAGTCGAGTCTTCTGTCCCAGGGAAACTTTTCTAGTGCATCCTTTGTTGCTGCTCATTTGCAGAGATCTGACATGACAGGTGCCACTCTTGTTTCATCAAACATGACAAGAGCCAACCTTTATGAGGCAGAGGCCACGAAATGCAAGTTCAACGGGGCAAATTGTGAAGGTGGTATCTTCAATTGGGCAAAACTCAGTGAAGGATCATTTGAAGAGGCCAATTTGTCTGATGCAGTCCTTAGCAATGCCGATTTATCGGGTTGTACATTGCTACATGCTAATCTTCAAAATGCTGACCTGCAGGATGCAAATTTAACTGATGCGAAGCTCTGTGCTGCAAATCTATCTGGCTGTAGATTCTCAAGGACTAACCTCCGAAATGCAAATCTGGAGGGCGCAAATTTAACGAATGCCAATCTGAGTGAAGCAAACCTTGAGAATGCCAACATGAGGAATGCCATACTAAGTGCTGCCAACTACCTGGTGGCCTTAAATAGAGGGGCCATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

352

Amino Acids

38.54

Weight (kDa)

5.08

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 11 - 96 7.3e-16 BTB/POZ domain
Pentapeptide_4 PF13599 119 - 176 8.9e-06 Pentapeptide repeat region
Pentapeptide PF00805 195 - 234 2.2e-06 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 242 - 272 1.4e-06 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 242 - 312 2.5e-11 Pentapeptide repeat region
Pentapeptide PF00805 262 - 299 8.3e-10 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 275 - 309 6.1e-09 Pentapeptide repeats (8 copies)
Pentapeptide PF00805 300 - 338 2.7e-13 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020051)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036446
rosa_multiflora Rmu_sc0000818.1_g000016 Rmu_sc0015038.1_g000003
rosa_samantha Rh5AG486400 Rh5BG506700 Rh5CG530200
rosa_wichuraiana Rw5G045140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 852
AccB1I GGYRCC 1 cut(s) 626
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 4 cut(s) 56, 466, 856, 946
AcuI CTGAAG 2 cut(s) 284, 308
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
AgsI TTSAA 8 cut(s) 136, 391, 473, 540, 697, 727, 758, 833
AjnI CCWGG 3 cut(s) 423, 564, 1026
AluBI AGCT 4 cut(s) 14, 250, 499, 874
AluI AGCT 4 cut(s) 14, 250, 499, 874
AlwI GGATC 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 5 cut(s) 283, 678, 762, 1032, 1047
ApeKI GCWGC 5 cut(s) 293, 499, 596, 881, 1016
ApoI RAATTY 4 cut(s) 56, 466, 856, 946
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 2 cut(s) 517, 944
AspS9I GGNCC 2 cut(s) 421, 1047
AsuC2I CCSGG 2 cut(s) 85, 86
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BccI CCATC 3 cut(s) 164, 203, 1058
BciT130I CCWGG 3 cut(s) 425, 566, 1028
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 2 cut(s) 22, 348
BcnI CCSGG 2 cut(s) 85, 86
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 2 cut(s) 845, 898
BfuAI ACCTGC 1 cut(s) 852
BfuI GTATCC 1 cut(s) 179
BglII AGATCT 1 cut(s) 611
BisI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 5 cut(s) 295, 501, 598, 883, 1018
Bme1390I CCNGG 5 cut(s) 85, 86, 425, 566, 1028
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 421, 1047
BmiI GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
BmrFI CCNGG 5 cut(s) 85, 86, 425, 566, 1028
BmsI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
BpiI GAAGAC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 2 cut(s) 465, 956
Bpu10I CCTNAGC 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 3 cut(s) 125, 892, 1001
BpuMI CCSGG 2 cut(s) 85, 86
BsaJI CCNNGG 3 cut(s) 84, 564, 565
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 3 cut(s) 328, 796, 812
BseBI CCWGG 3 cut(s) 425, 566, 1028
BseDI CCNNGG 3 cut(s) 84, 564, 565
BseGI GGATG 3 cut(s) 10, 584, 856
BseLI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
BseMI GCAATG 3 cut(s) 328, 796, 812
BseMII CTCAG 3 cut(s) 194, 754, 956
BseNI ACTGG 1 cut(s) 448
BseXI GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BshNI GGYRCC 1 cut(s) 626
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 5 cut(s) 457, 526, 961, 991, 1006
BsnI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BsoBI CYCGRG 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 809
Bsp143I GATC 5 cut(s) 22, 159, 348, 611, 749
Bsp1720I GCTNAGC 1 cut(s) 495
BspACI CCGC 1 cut(s) 120
BspANI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BspCNI CTCAG 3 cut(s) 195, 753, 957
BspLI GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
BspMAI CTGCAG 1 cut(s) 849
BspMI ACCTGC 1 cut(s) 852
BspPI GGATC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 626
BsrDI GCAATG 3 cut(s) 328, 796, 812
BsrGI TGTACA 1 cut(s) 809
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 84, 564, 565
BssMI GATC 5 cut(s) 22, 159, 348, 611, 749
Bst2UI CCWGG 3 cut(s) 425, 566, 1028
Bst6I CTCTTC 1 cut(s) 753
BstAUI TGTACA 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 12, 252
BstDEI CTNAG 8 cut(s) 194, 203, 485, 495, 740, 785, 965, 1010
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 3 cut(s) 10, 584, 856
BstHHI GCGC 2 cut(s) 517, 944
BstKTI GATC 5 cut(s) 25, 162, 351, 614, 752
BstMBI GATC 5 cut(s) 22, 159, 348, 611, 749
BstMWI GCNNNNNNNGC 2 cut(s) 260, 521
BstNI CCWGG 3 cut(s) 425, 566, 1028
BstNSI RCATGY 2 cut(s) 494, 824
BstSCI CCNGG 5 cut(s) 83, 84, 423, 564, 1026
BstSFI CTRYAG 2 cut(s) 845, 898
BstV1I GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 2 cut(s) 281, 1027
BstYI RGATCY 1 cut(s) 611
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BtsCI GGATG 3 cut(s) 10, 584, 856
BtsIMutI CAGTG 2 cut(s) 32, 748
BveI ACCTGC 1 cut(s) 852
Cac8I GCNNGC 2 cut(s) 12, 252
CfoI GCGC 2 cut(s) 517, 944
Cfr13I GGNCC 2 cut(s) 421, 1047
Cfr9I CCCGGG 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 1026
Csp6I GTAC 1 cut(s) 810
CviAII CATG 7 cut(s) 112, 281, 491, 619, 649, 821, 994
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 8 cut(s) 194, 203, 485, 495, 740, 785, 965, 1010
DpnI GATC 5 cut(s) 24, 161, 350, 613, 751
DpnII GATC 5 cut(s) 22, 159, 348, 611, 749
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 284, 308
Eco88I CYCGRG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 423, 564, 1026
FaeI CATG 7 cut(s) 115, 284, 494, 622, 652, 824, 997
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 547
FatI CATG 7 cut(s) 111, 280, 490, 618, 648, 820, 993
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 2 cut(s) 22, 348
Fnu4HI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
FokI GGATG 3 cut(s) 17, 571, 863
Fsp4HI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 516, 943
GluI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 465, 956
HaeIII GGCC 5 cut(s) 285, 680, 764, 1034, 1049
HapII CCGG 1 cut(s) 85
HhaI GCGC 2 cut(s) 517, 944
Hin1II CATG 7 cut(s) 115, 284, 494, 622, 652, 824, 997
Hin6I GCGC 2 cut(s) 515, 942
HinP1I GCGC 2 cut(s) 515, 942
HinfI GANTC 4 cut(s) 107, 548, 553, 903
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 616, 775, 923, 966
Hpy188III TCNNGA 5 cut(s) 61, 302, 336, 404, 935
HpyAV CCTTC 4 cut(s) 130, 283, 707, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 521
HpyF3I CTNAG 8 cut(s) 194, 203, 485, 495, 740, 785, 965, 1010
Hsp92II CATG 7 cut(s) 115, 284, 494, 622, 652, 824, 997
HspAI GCGC 2 cut(s) 515, 942
Ksp22I TGATCA 2 cut(s) 22, 348
Kzo9I GATC 5 cut(s) 22, 159, 348, 611, 749
LmnI GCTCC 2 cut(s) 88, 476
Lsp1109I GCAGC 5 cut(s) 305, 486, 583, 868, 1003
LweI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
MabI ACCWGGT 1 cut(s) 1026
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 312
MalI GATC 5 cut(s) 24, 161, 350, 613, 751
MboI GATC 5 cut(s) 22, 159, 348, 611, 749
MboII GAAGA 5 cut(s) 154, 548, 715, 770, 821
MfeI CAATTG 3 cut(s) 255, 275, 727
MflI RGATCY 1 cut(s) 611
MlyI GAGTC 3 cut(s) 116, 557, 562
MmeI TCCRAC 2 cut(s) 25, 399
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 4 cut(s) 39, 860, 950, 1037
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 5 cut(s) 85, 86, 425, 566, 1028
MunI CAATTG 3 cut(s) 255, 275, 727
Mva1269I GAATGC 5 cut(s) 457, 526, 961, 991, 1006
MvaI CCWGG 3 cut(s) 425, 566, 1028
MwoI GCNNNNNNNGC 2 cut(s) 260, 521
NciI CCSGG 2 cut(s) 85, 86
NdeII GATC 5 cut(s) 22, 159, 348, 611, 749
NlaIII CATG 7 cut(s) 115, 284, 494, 622, 652, 824, 997
NlaIV GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
NspI RCATGY 2 cut(s) 494, 824
PasI CCCWGGG 1 cut(s) 565
PctI GAATGC 5 cut(s) 457, 526, 961, 991, 1006
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 903
PkrI GCNGC 5 cut(s) 295, 501, 598, 883, 1018
PleI GAGTC 3 cut(s) 115, 556, 561
PpsI GAGTC 3 cut(s) 115, 556, 561
Psp6I CCWGG 3 cut(s) 423, 564, 1026
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 3 cut(s) 423, 564, 1026
PspN4I GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
PspPI GGNCC 2 cut(s) 421, 1047
PstI CTGCAG 1 cut(s) 849
PsuI RGATCY 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SaqAI TTAA 4 cut(s) 39, 860, 950, 1037
SatI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
Sau3AI GATC 5 cut(s) 22, 159, 348, 611, 749
Sau96I GGNCC 2 cut(s) 421, 1047
SbfI CCTGCAGG 1 cut(s) 849
SchI GAGTC 3 cut(s) 116, 557, 562
ScrFI CCNGG 5 cut(s) 85, 86, 425, 566, 1028
SdaI CCTGCAGG 1 cut(s) 849
SexAI ACCWGGT 1 cut(s) 1026
SfaNI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
SfcI CTRYAG 2 cut(s) 845, 898
SinI GGWCC 1 cut(s) 421
SmaI CCCGGG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 104, 907, 980
SmoI CTYRAG 3 cut(s) 104, 907, 980
Sse8387I CCTGCAGG 1 cut(s) 849
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 5 cut(s) 83, 84, 423, 564, 1026
TaqI TCGA 2 cut(s) 162, 551
TatI WGTACW 1 cut(s) 809
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 4 cut(s) 39, 860, 950, 1037
Tru9I TTAA 4 cut(s) 39, 860, 950, 1037
TscAI CASTG 2 cut(s) 32, 748
TseI GCWGC 5 cut(s) 293, 499, 596, 881, 1016
TspDTI ATGAA 1 cut(s) 630
TspMI CCCGGG 1 cut(s) 84
TspRI CASTG 2 cut(s) 32, 748
VpaK11BI GGWCC 1 cut(s) 421
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 4 cut(s) 56, 466, 856, 946
XceI RCATGY 2 cut(s) 494, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 1027
XmaI CCCGGG 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.