Rmu_sc0015038.1_g000003

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015038.1
OG0020051
Physical Location & Seq
Forward (+)
8417 .. 9475
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015038.1_g000003.1.cds

Sequence Viewer

Length: 1059 bp
atggatgtgccagctgaaagtgatcagtgggtcaatcttaatgttggaggcagaaaattcttgacaaccattgatacgctcacccgggagccaaactcaatgcttgagtccttgtttagcgggagatacacattgaaggagaagaatggatatgtgatgatcgacagagatgggttttattttggatacatacttaggtggctgagagatggggtggttcccatattggagccaatgttttacccagagctggcaattgaggcagattactaccaattgcgtggcctgaaggcagcacttcaggaggttatgttacgatgcaatgccgacttgtcaagaaaggaagtgatcacaagtattcaggctggggataaaactttcacaggtttcaatttctcaggtcaggatttgtcaaagttggacctggaaagggcagattttactggagggtgtctgcattctgtaaattttcaaggagcaaatcttagacatgctaagctgcgaaattgtgatgcgctgaatgctgtgtttgataattcaacattggagtcgagtcttctgtcccagggaaacttttctagtgcatcctttgttgctgctcatttgcagagatctgacatgacaggtgccactcttgtttcatcaaacatgacaagagccaacctttttgaggcagaggccacgaaatgcaagttcaacggggcaaattgtgaaggtggtatcttcaattgggcaaaactcagtgaaggatcatttgaagaggccaatttgtctgatgcagtccttagcaatgccgatttatcgggttgtacattgttacatgctaatcttcaaagtgctaacctgcaggatgcaaatttaactgatgcgaagctctgtgctgcaaatctatctggctgtagattctcaaggactaacctccaaaatgcaaatctggagggcgcaaatttaacgaatgccaatctgagtgaagcaaaccttgagaatgccaacatgaggaatgccatactaagtgctgccaactacctggtggccttaaatagaggggccatcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

352

Amino Acids

38.47

Weight (kDa)

5.08

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020051)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036446
rosa_multiflora Rmu_sc0000818.1_g000016 Rmu_sc0015038.1_g000003
rosa_samantha Rh5AG486400 Rh5BG506700 Rh5CG530200
rosa_wichuraiana Rw5G045140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 852
AccB1I GGYRCC 1 cut(s) 626
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 757
AcsI RAATTY 4 cut(s) 56, 466, 856, 946
AcuI CTGAAG 2 cut(s) 284, 308
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
AgsI TTSAA 8 cut(s) 136, 391, 473, 540, 697, 727, 758, 833
AjnI CCWGG 3 cut(s) 423, 564, 1026
AluBI AGCT 4 cut(s) 14, 250, 499, 874
AluI AGCT 4 cut(s) 14, 250, 499, 874
AlwI GGATC 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 5 cut(s) 283, 678, 762, 1032, 1047
ApeKI GCWGC 5 cut(s) 293, 499, 596, 881, 1016
ApoI RAATTY 4 cut(s) 56, 466, 856, 946
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 2 cut(s) 517, 944
AspS9I GGNCC 2 cut(s) 421, 1047
AsuC2I CCSGG 2 cut(s) 85, 86
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BccI CCATC 3 cut(s) 164, 203, 1058
BciT130I CCWGG 3 cut(s) 425, 566, 1028
BciVI GTATCC 1 cut(s) 179
BclI TGATCA 2 cut(s) 22, 348
BcnI CCSGG 2 cut(s) 85, 86
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 2 cut(s) 845, 898
BfuAI ACCTGC 1 cut(s) 852
BfuI GTATCC 1 cut(s) 179
BglII AGATCT 1 cut(s) 611
BisI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 5 cut(s) 295, 501, 598, 883, 1018
Bme1390I CCNGG 5 cut(s) 85, 86, 425, 566, 1028
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 421, 1047
BmiI GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
BmrFI CCNGG 5 cut(s) 85, 86, 425, 566, 1028
BmsI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
BpiI GAAGAC 1 cut(s) 548
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 2 cut(s) 465, 956
Bpu10I CCTNAGC 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 3 cut(s) 125, 892, 1001
BpuMI CCSGG 2 cut(s) 85, 86
BsaJI CCNNGG 3 cut(s) 84, 564, 565
BsaXI ACNNNNNCTCC 4 cut(s) 221, 251, 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 2 cut(s) 328, 796
BseBI CCWGG 3 cut(s) 425, 566, 1028
BseDI CCNNGG 3 cut(s) 84, 564, 565
BseGI GGATG 3 cut(s) 10, 584, 856
BseLI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
BseMI GCAATG 2 cut(s) 328, 796
BseMII CTCAG 4 cut(s) 194, 411, 754, 956
BseNI ACTGG 1 cut(s) 448
BseXI GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BseYI CCCAGC 1 cut(s) 365
BshFI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BshNI GGYRCC 1 cut(s) 626
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 4 cut(s) 250, 430, 670, 996
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 5 cut(s) 457, 526, 961, 991, 1006
BsnI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BsoBI CYCGRG 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 809
Bsp143I GATC 5 cut(s) 22, 159, 348, 611, 749
Bsp1720I GCTNAGC 1 cut(s) 495
BspACI CCGC 1 cut(s) 120
BspANI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BspCNI CTCAG 4 cut(s) 195, 410, 753, 957
BspLI GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
BspMAI CTGCAG 1 cut(s) 849
BspMI ACCTGC 1 cut(s) 852
BspPI GGATC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 626
BsrDI GCAATG 2 cut(s) 328, 796
BsrGI TGTACA 1 cut(s) 809
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 84, 564, 565
BssMI GATC 5 cut(s) 22, 159, 348, 611, 749
Bst2UI CCWGG 3 cut(s) 425, 566, 1028
Bst6I CTCTTC 1 cut(s) 753
BstAUI TGTACA 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 12, 252
BstDEI CTNAG 9 cut(s) 194, 203, 397, 485, 495, 740, 785, 965, 1010
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 3 cut(s) 10, 584, 856
BstHHI GCGC 2 cut(s) 517, 944
BstKTI GATC 5 cut(s) 25, 162, 351, 614, 752
BstMBI GATC 5 cut(s) 22, 159, 348, 611, 749
BstMWI GCNNNNNNNGC 2 cut(s) 260, 521
BstNI CCWGG 3 cut(s) 425, 566, 1028
BstNSI RCATGY 2 cut(s) 494, 824
BstSCI CCNGG 5 cut(s) 83, 84, 423, 564, 1026
BstSFI CTRYAG 2 cut(s) 845, 898
BstV1I GCAGC 5 cut(s) 305, 486, 583, 868, 1003
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 2 cut(s) 281, 1027
BstYI RGATCY 1 cut(s) 611
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 5 cut(s) 285, 680, 764, 1034, 1049
BtsCI GGATG 3 cut(s) 10, 584, 856
BtsIMutI CAGTG 2 cut(s) 32, 748
BveI ACCTGC 1 cut(s) 852
Cac8I GCNNGC 2 cut(s) 12, 252
CfoI GCGC 2 cut(s) 517, 944
Cfr13I GGNCC 2 cut(s) 421, 1047
Cfr9I CCCGGG 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 1026
Csp6I GTAC 1 cut(s) 810
CviAII CATG 5 cut(s) 491, 619, 649, 821, 994
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 9 cut(s) 194, 203, 397, 485, 495, 740, 785, 965, 1010
DpnI GATC 5 cut(s) 24, 161, 350, 613, 751
DpnII GATC 5 cut(s) 22, 159, 348, 611, 749
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 284, 308
Eco88I CYCGRG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 423, 564, 1026
FaeI CATG 5 cut(s) 494, 622, 652, 824, 997
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 547
FatI CATG 5 cut(s) 490, 618, 648, 820, 993
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 2 cut(s) 22, 348
Fnu4HI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
FokI GGATG 3 cut(s) 17, 571, 863
Fsp4HI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
FspBI CTAG 1 cut(s) 579
GlaI GCGC 2 cut(s) 516, 943
GluI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 465, 956
HaeIII GGCC 5 cut(s) 285, 680, 764, 1034, 1049
HapII CCGG 1 cut(s) 85
HhaI GCGC 2 cut(s) 517, 944
Hin1II CATG 5 cut(s) 494, 622, 652, 824, 997
Hin6I GCGC 2 cut(s) 515, 942
HinP1I GCGC 2 cut(s) 515, 942
HinfI GANTC 4 cut(s) 107, 548, 553, 903
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 616, 775, 966
Hpy188III TCNNGA 5 cut(s) 61, 302, 336, 404, 935
HpyAV CCTTC 4 cut(s) 130, 283, 707, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 521
HpyF3I CTNAG 9 cut(s) 194, 203, 397, 485, 495, 740, 785, 965, 1010
Hsp92II CATG 5 cut(s) 494, 622, 652, 824, 997
HspAI GCGC 2 cut(s) 515, 942
Ksp22I TGATCA 2 cut(s) 22, 348
Kzo9I GATC 5 cut(s) 22, 159, 348, 611, 749
LmnI GCTCC 3 cut(s) 88, 229, 476
Lsp1109I GCAGC 5 cut(s) 305, 486, 583, 868, 1003
LweI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
MabI ACCWGGT 1 cut(s) 1026
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 312, 816
MalI GATC 5 cut(s) 24, 161, 350, 613, 751
MboI GATC 5 cut(s) 22, 159, 348, 611, 749
MboII GAAGA 5 cut(s) 154, 548, 715, 770, 821
MfeI CAATTG 3 cut(s) 255, 275, 727
MflI RGATCY 1 cut(s) 611
MlyI GAGTC 3 cut(s) 116, 557, 562
MmeI TCCRAC 2 cut(s) 25, 399
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 4 cut(s) 39, 860, 950, 1037
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 5 cut(s) 85, 86, 425, 566, 1028
MunI CAATTG 3 cut(s) 255, 275, 727
Mva1269I GAATGC 5 cut(s) 457, 526, 961, 991, 1006
MvaI CCWGG 3 cut(s) 425, 566, 1028
MwoI GCNNNNNNNGC 2 cut(s) 260, 521
NciI CCSGG 2 cut(s) 85, 86
NdeII GATC 5 cut(s) 22, 159, 348, 611, 749
NlaIII CATG 5 cut(s) 494, 622, 652, 824, 997
NlaIV GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
NspI RCATGY 2 cut(s) 494, 824
PasI CCCWGGG 1 cut(s) 565
PctI GAATGC 5 cut(s) 457, 526, 961, 991, 1006
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 903
PkrI GCNGC 5 cut(s) 295, 501, 598, 883, 1018
PleI GAGTC 3 cut(s) 115, 556, 561
PpsI GAGTC 3 cut(s) 115, 556, 561
Psp6I CCWGG 3 cut(s) 423, 564, 1026
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 3 cut(s) 423, 564, 1026
PspN4I GGNNCC 5 cut(s) 90, 219, 231, 628, 1048
PspPI GGNCC 2 cut(s) 421, 1047
PstI CTGCAG 1 cut(s) 849
PsuI RGATCY 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SaqAI TTAA 4 cut(s) 39, 860, 950, 1037
SatI GCNGC 5 cut(s) 294, 500, 597, 882, 1017
Sau3AI GATC 5 cut(s) 22, 159, 348, 611, 749
Sau96I GGNCC 2 cut(s) 421, 1047
SbfI CCTGCAGG 1 cut(s) 849
SchI GAGTC 3 cut(s) 116, 557, 562
ScrFI CCNGG 5 cut(s) 85, 86, 425, 566, 1028
SdaI CCTGCAGG 1 cut(s) 849
SexAI ACCWGGT 1 cut(s) 1026
SfaNI GCATC 6 cut(s) 308, 502, 593, 766, 841, 856
SfcI CTRYAG 2 cut(s) 845, 898
SinI GGWCC 1 cut(s) 421
SmaI CCCGGG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 104, 907, 980
SmoI CTYRAG 3 cut(s) 104, 907, 980
Sse8387I CCTGCAGG 1 cut(s) 849
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 5 cut(s) 83, 84, 423, 564, 1026
TaqI TCGA 2 cut(s) 162, 551
TatI WGTACW 1 cut(s) 809
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 4 cut(s) 39, 860, 950, 1037
Tru9I TTAA 4 cut(s) 39, 860, 950, 1037
TscAI CASTG 2 cut(s) 32, 748
TseI GCWGC 5 cut(s) 293, 499, 596, 881, 1016
TspDTI ATGAA 1 cut(s) 630
TspMI CCCGGG 1 cut(s) 84
TspRI CASTG 2 cut(s) 32, 748
VpaK11BI GGWCC 1 cut(s) 421
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 4 cut(s) 56, 466, 856, 946
XceI RCATGY 2 cut(s) 494, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 1027
XmaI CCCGGG 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.