Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007695

Physical Location & Seq

Genomic Coordinates Reverse (-)

83027128 .. 83028680

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCATGCTCAACCTCTCGTTCAATCACTTTTCCGGCATGATTTCGAAATCTCTGGGAGCTTTACCAGTGACGCTCGAGAATTAGATTTGCGACGTGTCTTGGCTGCTCAGAGTCTCAGCTCCGGCAGATATCCGGGAAGATGGGTATTTGGGCCCACCGCCAATCGCAACCAACTAGCCCATTCTTGGCCTCATTTGGGAGCAGATCGCTATTCTCCACACCGGTTCGCTCGAAGACCGATCCCCACGTCGCTGGTGTCTTTAACCAAGGATAACGATAGGTATGGAAAGATAATTATTGAAGAAGGAGGAGTTGGGCCCTTGTTAAAATTGATCAAAGAGGGCAAGGTTGAAGGCCAAGAGAACGCTGCCAAGGCTCTCGGGTTACGAGGCCGAGACCTTGAAAGCGTGGAGCACATGATCATTGCCGGAGTATGCTCGGTGTTTTCGAAGATTCTGAAAGAAGGGCTGATGAAAGTTCAGGCGATGGTGGCGAAGGCGGTGGCAGAGCTAGCAAGGCAATTACCTGAAATGCCTTTGCGCAGCACAACATTATTCGATTGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0000322 GO:0000323 GO:0000324 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006996 GO:0007033 GO:0008150 GO:0009607 GO:0009987 GO:0016043 GO:0030447 GO:0030448 GO:0036180 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044424 GO:0044444 GO:0044464 GO:0048308 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

190

Amino Acids

20.96

Weight (kDa)

9.55

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36030 AT5G66200
fragaria_vesca	FvH4_1g11750
malus_domestica	MD02G1131200.v1.1 MD02G1131400.v1.1 MD15G1244600.v1.1
prunus_persica	Prupe.7G168800_v2.0.a1 Prupe.7G168900_v2.0.a1 Prupe.7G169100_v2.0.a1 Prupe.7G170400_v2.0.a1
pyrus_communis	pycom02g10260 pycom15g21540
rosa_chinensis	RchiOBHm_Chr2g0099341
rosa_laevigata	RLG00000016873 RLG00000036660
rosa_multiflora	Rmu_sc0002785.1_g000007 Rmu_sc0012901.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143190
rosa_rugosa	Rorug02G0078800
rosa_samantha	Rh2AG128600 Rh2BG131400 Rh2CG132400 Rh2DG132800
rosa_wichuraiana	Rw2G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	542
AciI	CCGC	2 cut(s)	159, 500
AclWI	GGATC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	186, 197
AflIII	ACRYGT	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	23, 302, 353, 404
AjiI	CACGTC	2 cut(s)	95, 249
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	3 cut(s)	60, 120, 511
AluI	AGCT	3 cut(s)	60, 120, 511
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	119, 390
AlwI	GGATC	1 cut(s)	235
Ama87I	CYCGRG	2 cut(s)	75, 380
AoxI	GGCC	5 cut(s)	152, 188, 317, 355, 391
ApaI	GGGCCC	2 cut(s)	156, 321
ApeKI	GCWGC	3 cut(s)	104, 368, 543
AsiGI	ACCGGT	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	4 cut(s)	152, 153, 317, 318
AsuC2I	CCSGG	1 cut(s)	135
AsuII	TTCGAA	2 cut(s)	45, 449
AsuNHI	GCTAGC	1 cut(s)	511
AvaI	CYCGRG	2 cut(s)	75, 380
BaeGI	GKGCMC	2 cut(s)	156, 321
BanII	GRGCYC	2 cut(s)	156, 321
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	91, 355, 555
BccI	CCATC	2 cut(s)	135, 481
BclI	TGATCA	2 cut(s)	333, 420
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	119, 390
BfaI	CTAG	2 cut(s)	176, 512
BisI	GCNGC	3 cut(s)	105, 369, 544
BlsI	GCNGC	3 cut(s)	106, 370, 545
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	2 cut(s)	75, 380
BmgBI	CACGTC	2 cut(s)	95, 249
BmgT120I	GGNCC	4 cut(s)	152, 153, 317, 318
BmiI	GGNNCC	2 cut(s)	154, 319
BmrFI	CCNGG	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	241
Bpu14I	TTCGAA	2 cut(s)	45, 449
BpuMI	CCSGG	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	267, 372
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 197
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	267, 372
BseLI	CCNNNNNNNGG	2 cut(s)	186, 197
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	122, 130
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	2 cut(s)	156, 321
BseXI	GCAGC	3 cut(s)	91, 355, 555
BshFI	GGCC	5 cut(s)	154, 190, 319, 357, 393
BshTI	ACCGGT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	2 cut(s)	75, 380
BsiSI	CCGG	5 cut(s)	34, 123, 134, 223, 429
BslI	CCNNNNNNNGG	2 cut(s)	186, 197
BsmAI	GTCTC	2 cut(s)	119, 390
BsnI	GGCC	5 cut(s)	154, 190, 319, 357, 393
Bso31I	GGTCTC	1 cut(s)	390
BsoBI	CYCGRG	2 cut(s)	75, 380
Bsp119I	TTCGAA	2 cut(s)	45, 449
Bsp120I	GGGCCC	2 cut(s)	152, 317
Bsp1286I	GDGCHC	3 cut(s)	156, 321, 417
Bsp143I	GATC	4 cut(s)	205, 240, 333, 420
BspACI	CCGC	2 cut(s)	159, 500
BspANI	GGCC	5 cut(s)	154, 190, 319, 357, 393
BspCNI	CTCAG	2 cut(s)	121, 129
BspLI	GGNNCC	2 cut(s)	154, 319
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	2 cut(s)	45, 449
BspTNI	GGTCTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	267, 372
BssMI	GATC	4 cut(s)	205, 240, 333, 420
BssT1I	CCWWGG	2 cut(s)	267, 372
BstBI	TTCGAA	2 cut(s)	45, 449
BstC8I	GCNNGC	2 cut(s)	6, 513
BstDEI	CTNAG	2 cut(s)	108, 116
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	4 cut(s)	208, 243, 336, 423
BstMAI	GTCTC	2 cut(s)	119, 390
BstMBI	GATC	4 cut(s)	205, 240, 333, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 491, 512, 517
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	2 cut(s)	156, 321
BstV1I	GCAGC	3 cut(s)	91, 355, 555
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	253
BsuRI	GGCC	5 cut(s)	154, 190, 319, 357, 393
BtgZI	GCGATG	1 cut(s)	500
BtrI	CACGTC	2 cut(s)	95, 249
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	6, 513
CfoI	GCGC	1 cut(s)	543
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	4 cut(s)	152, 153, 317, 318
CseI	GACGC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	3 cut(s)	5, 38, 418
DdeI	CTNAG	2 cut(s)	108, 116
DpnI	GATC	4 cut(s)	207, 242, 335, 422
DpnII	GATC	4 cut(s)	205, 240, 333, 420
Eco130I	CCWWGG	2 cut(s)	267, 372
Eco24I	GRGCYC	2 cut(s)	156, 321
Eco31I	GGTCTC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	75, 380
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	267, 372
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	156, 321
ErhI	CCWWGG	2 cut(s)	267, 372
FaeI	CATG	3 cut(s)	8, 41, 421
FaiI	YATR	5 cut(s)	6, 39, 285, 419, 436
FatI	CATG	3 cut(s)	4, 37, 417
FbaI	TGATCA	2 cut(s)	333, 420
Fnu4HI	GCNGC	3 cut(s)	105, 369, 544
FriOI	GRGCYC	2 cut(s)	156, 321
Fsp4HI	GCNGC	3 cut(s)	105, 369, 544
FspBI	CTAG	2 cut(s)	176, 512
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	3 cut(s)	105, 369, 544
HaeIII	GGCC	5 cut(s)	154, 190, 319, 357, 393
HapII	CCGG	5 cut(s)	34, 123, 134, 223, 429
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	3 cut(s)	8, 41, 421
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HinfI	GANTC	2 cut(s)	112, 454
HpaII	CCGG	5 cut(s)	34, 123, 134, 223, 429
Hpy188I	TCNGA	2 cut(s)	111, 459
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	96, 253
HpyAV	CCTTC	4 cut(s)	299, 347, 458, 490
HpyCH4IV	ACGT	2 cut(s)	94, 248
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 491, 512, 517
HpyF3I	CTNAG	2 cut(s)	108, 116
HpySE526I	ACGT	2 cut(s)	94, 248
Hsp92II	CATG	3 cut(s)	8, 41, 421
HspAI	GCGC	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	333, 420
Kzo9I	GATC	4 cut(s)	205, 240, 333, 420
LmnI	GCTCC	4 cut(s)	57, 125, 200, 412
Lsp1109I	GCAGC	3 cut(s)	91, 355, 555
MaeI	CTAG	2 cut(s)	176, 512
MaeII	ACGT	2 cut(s)	94, 248
MaeIII	GTNAC	2 cut(s)	68, 384
MalI	GATC	4 cut(s)	207, 242, 335, 422
MboI	GATC	4 cut(s)	205, 240, 333, 420
MboII	GAAGA	4 cut(s)	150, 246, 314, 463
MhlI	GDGCHC	3 cut(s)	156, 321, 417
MluCI	AATT	4 cut(s)	80, 294, 329, 521
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	24, 201, 302, 334, 383
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	263, 326
MspI	CCGG	5 cut(s)	34, 123, 134, 223, 429
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	374, 491, 512, 517
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	4 cut(s)	205, 240, 333, 420
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	3 cut(s)	8, 41, 421
NlaIV	GGNNCC	2 cut(s)	154, 319
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	68
NsbI	TGCGCA	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
NspV	TTCGAA	2 cut(s)	45, 449
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	106, 370, 545
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	154, 319
PspOMI	GGGCCC	2 cut(s)	152, 317
PspPI	GGNCC	4 cut(s)	152, 153, 317, 318
SaqAI	TTAA	2 cut(s)	263, 326
SatI	GCNGC	3 cut(s)	105, 369, 544
Sau3AI	GATC	4 cut(s)	205, 240, 333, 420
Sau96I	GGNCC	4 cut(s)	152, 153, 317, 318
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	3 cut(s)	156, 321, 417
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	2 cut(s)	45, 449
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	80, 294, 329, 521
SsiI	CCGC	2 cut(s)	159, 500
SspMI	CTAG	2 cut(s)	176, 512
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	2 cut(s)	267, 372
TaiI	ACGT	2 cut(s)	97, 251
TaqI	TCGA	5 cut(s)	45, 76, 232, 449, 558
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	80, 294, 329, 521
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	2 cut(s)	263, 326
Tru9I	TTAA	2 cut(s)	263, 326
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	3 cut(s)	104, 368, 543
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	73
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	2 cut(s)	176, 512
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.