Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007695

Physical Location & Seq

Genomic Coordinates Reverse (-)

6383195 .. 6383491

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0078800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTATGCTTGTTCTAGCTCGATATGAACTTGTTGACGACACAGTGTATCCCAAAGATGAAGCATTTGATCGTCTATTCTCCAATAATGATGAGGCCTCGTCATCATCAACGGTTAATTTCAATACCAGTGATAATTATCCGGTGGTTCCAAACATAAACACGGGTGCAGCACCATATTGTTTAGTTAGGTGTTTTTATGACTGTGTACCTCATCTATTGACATTTCGAGACTGTTATGATCCCTGCGTTGTGAAATGCCAGATAGACACTCCTCCAGCAGCTCTGCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0000322 GO:0000323 GO:0000324 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006996 GO:0007033 GO:0008150 GO:0009607 GO:0009987 GO:0016043 GO:0030447 GO:0030448 GO:0036180 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044424 GO:0044444 GO:0044464 GO:0048308 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

4.22

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36030 AT5G66200
fragaria_vesca	FvH4_1g11750
malus_domestica	MD02G1131200.v1.1 MD02G1131400.v1.1 MD15G1244600.v1.1
prunus_persica	Prupe.7G168800_v2.0.a1 Prupe.7G168900_v2.0.a1 Prupe.7G169100_v2.0.a1 Prupe.7G170400_v2.0.a1
pyrus_communis	pycom02g10260 pycom15g21540
rosa_chinensis	RchiOBHm_Chr2g0099341
rosa_laevigata	RLG00000016873 RLG00000036660
rosa_multiflora	Rmu_sc0002785.1_g000007 Rmu_sc0012901.1_g000004
rosa_roxburghii	Rroxscaffold_2G00143190
rosa_rugosa	Rorug02G0078800
rosa_samantha	Rh2AG128600 Rh2BG131400 Rh2CG132400 Rh2DG132800
rosa_wichuraiana	Rw2G009910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	2 cut(s)	20, 284
AluI	AGCT	2 cut(s)	20, 284
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	170, 281
BbvI	GCAGC	2 cut(s)	182, 293
BciVI	GTATCC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	17, 290
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	171, 282
BlsI	GCNGC	2 cut(s)	172, 283
BmiI	GGNNCC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	138
BseJI	GATNNNNATC	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	182, 293
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	70, 241
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	70, 241
Bst4CI	ACNGT	4 cut(s)	46, 115, 206, 236
BstKTI	GATC	2 cut(s)	73, 244
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	70, 241
BstV1I	GCAGC	2 cut(s)	182, 293
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	98
BtsIMutI	CAGTG	2 cut(s)	51, 136
Csp6I	GTAC	1 cut(s)	209
CviJI	RGCY	3 cut(s)	20, 98, 284
CviKI_1	RGCY	3 cut(s)	20, 98, 284
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	2 cut(s)	72, 243
DpnII	GATC	2 cut(s)	70, 241
Eco147I	AGGCCT	1 cut(s)	98
FaiI	YATR	6 cut(s)	8, 27, 158, 178, 201, 240
Fnu4HI	GCNGC	2 cut(s)	171, 282
Fsp4HI	GCNGC	2 cut(s)	171, 282
FspBI	CTAG	2 cut(s)	17, 290
GluI	GCNGC	2 cut(s)	171, 282
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	37, 209
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	37, 209
HpyCH4III	ACNGT	4 cut(s)	46, 115, 206, 236
HpyCH4V	TGCA	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	70, 241
LpnPI	CCDG	5 cut(s)	142, 156, 259, 275, 291
Lsp1109I	GCAGC	2 cut(s)	182, 293
MaeI	CTAG	2 cut(s)	17, 290
MalI	GATC	2 cut(s)	72, 243
MboI	GATC	2 cut(s)	70, 241
MluCI	AATT	2 cut(s)	118, 136
MnlI	CCTC	4 cut(s)	88, 109, 222, 285
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	70, 241
NlaIV	GGNNCC	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	172, 283
PspN4I	GGNNCC	1 cut(s)	150
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	171, 282
Sau3AI	GATC	2 cut(s)	70, 241
SetI	ASST	4 cut(s)	22, 194, 214, 286
Sse9I	AATT	2 cut(s)	118, 136
SseBI	AGGCCT	1 cut(s)	98
SspMI	CTAG	2 cut(s)	17, 290
StuI	AGGCCT	1 cut(s)	98
TaaI	ACNGT	4 cut(s)	46, 115, 206, 236
TaqI	TCGA	2 cut(s)	22, 229
TasI	AATT	2 cut(s)	118, 136
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	51, 136
TseI	GCWGC	2 cut(s)	170, 281
TspDTI	ATGAA	2 cut(s)	42, 75
TspRI	CASTG	2 cut(s)	51, 136
XspI	CTAG	2 cut(s)	17, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.