RLG00000036821

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020045
Physical Location & Seq
Reverse (-)
85210226 .. 85210805
580 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036821

Sequence Viewer

Length: 345 bp
ATGGATGAAGTCACCAGGATACTGGAGGATGAGAACATCACTGTGTTTGGGGTGCACGGAAGAGGAGGCGTTGGCAAGACAACCATGGTGAAACATGTCAGTGTACAAGCTGAAAAAGATGGGCTCTTTGCTTTTGCGATTATGGTTGTTGATAATGAATGTCTGCCATGCTATGGGGTGCCAAGCACTGATCCCGCTCAACAACTGCCAGAAGAAGTTGCCAAGGCCCTGGGAGATAATGACTTGGACGAATGGAATCTAGCAGCTCCACAACTAAATGCAGCTCAACCTGTCAACCCTAAAGATGAGAGAGACGCATATCACAAGAATAAATTTAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

115

Amino Acids

12.52

Weight (kDa)

4.7

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 3 - 51 1.4e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020045)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036821
rosa_multiflora Rmu_co7986712.1_g000001 Rmu_sc0006084.1_g000007
rosa_rugosa Rorug05G0464600 Rorug05G0464600
rosa_wichuraiana Rw0G022740 Rw5G048220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 197
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 94
AjnI CCWGG 2 cut(s) 14, 228
AluBI AGCT 4 cut(s) 110, 266, 284, 340
AluI AGCT 4 cut(s) 110, 266, 284, 340
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 225
ApaLI GTGCAC 1 cut(s) 53
ApeKI GCWGC 2 cut(s) 263, 281
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 4, 100
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 275, 293
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 16, 230
BciVI GTATCC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 12
BisI GCNGC 2 cut(s) 264, 282
BlsI GCNGC 2 cut(s) 265, 283
Bme1390I CCNGG 2 cut(s) 16, 230
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 16, 230
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 84, 222, 228, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 16, 230
BseDI CCNNGG 4 cut(s) 84, 222, 228, 229
BseGI GGATG 2 cut(s) 10, 34
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 275, 293
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 57, 126
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 84, 222, 228, 229
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 84, 222
Bst2UI CCWGG 2 cut(s) 16, 230
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 10, 34
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 190
BstNI CCWGG 2 cut(s) 16, 230
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 14, 228
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 275, 293
BstXI CCANNNNNNTGG 2 cut(s) 22, 229
BsuI GTATCC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 10, 34
BtsIMutI CAGTG 3 cut(s) 39, 106, 186
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 85, 95, 168
CviJI RGCY 6 cut(s) 110, 124, 227, 266, 284, 340
CviKI_1 RGCY 6 cut(s) 110, 124, 227, 266, 284, 340
CviQI GTAC 1 cut(s) 104
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 84, 222
Eco24I GRGCYC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 14, 228
EcoT14I CCWWGG 2 cut(s) 84, 222
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 84, 222
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 3 cut(s) 88, 98, 171
FaiI YATR 7 cut(s) 86, 96, 143, 169, 174, 319, 343
FatI CATG 3 cut(s) 84, 94, 167
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 264, 282
FokI GGATG 2 cut(s) 17, 41
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 264, 282
FspBI CTAG 1 cut(s) 260
GluI GCNGC 2 cut(s) 264, 282
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 227
HgaI GACGC 1 cut(s) 323
Hin1II CATG 3 cut(s) 88, 98, 171
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 256
HphI GGTGA 2 cut(s) 4, 100
Hpy166II GTNNAC 3 cut(s) 55, 104, 295
Hpy8I GTNNAC 3 cut(s) 55, 104, 295
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 55, 281
Hsp92II CATG 3 cut(s) 88, 98, 171
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 8, 28, 215, 222, 242, 303
Lsp1109I GCAGC 2 cut(s) 275, 293
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 197
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 72, 224
MhlI GDGCHC 2 cut(s) 57, 126
MluCI AATT 1 cut(s) 332
MnlI CCTC 3 cut(s) 19, 56, 59
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 41, 99
MspR9I CCNGG 2 cut(s) 16, 230
MvaI CCWGG 2 cut(s) 16, 230
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 190
NlaIII CATG 3 cut(s) 88, 98, 171
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 98
PasI CCCWGGG 1 cut(s) 229
PciI ACATGT 1 cut(s) 94
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 2 cut(s) 265, 283
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 14, 228
PspGI CCWGG 2 cut(s) 14, 228
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 226
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 41, 99
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 264, 282
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 16, 230
SduI GDGCHC 2 cut(s) 57, 126
SetI ASST 5 cut(s) 112, 268, 286, 292, 342
SmiMI CAYNNNNRTG 2 cut(s) 41, 99
Sse9I AATT 1 cut(s) 332
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 14, 228
StyI CCWWGG 2 cut(s) 84, 222
TaaI ACNGT 1 cut(s) 43
TasI AATT 1 cut(s) 332
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 3 cut(s) 46, 106, 193
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 263, 281
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 21, 171
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 3 cut(s) 46, 106, 193
Van91I CCANNNNNTGG 1 cut(s) 173
VneI GTGCAC 1 cut(s) 53
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 98
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.