Rmu_co7986712.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7986712.1
OG0020045
Physical Location & Seq
Reverse (-)
2 .. 518
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7986712.1_g000001.1.cds

Sequence Viewer

Length: 439 bp
atggagtgctgctttagaaggagtggctggaatcgctgggttcccgtcaactaagtatcagacggacatagaactaatcgaagacgttgtgaaacatttgttgagcaaagtacttgaagcacccaccggaaactttgaaacatttaaagcgacaaggcgagcaatggatgacgtcatggaggtattaaaagatgatcaagtcactgtccttggggtgcatggagtgggtggcgttggaaagacgacgatggtcaaacatgttagcgcacaagcccagaaagatgggatttttgatcatgtgattatggttgtcgtatccaaaagccctgacttgcaagaaattcgaggcacattggcaggttcgctggggatcatgagaggaaataggatgcttataatattggacgacatttgggagagttttgaactctcgagcatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

146

Amino Acids

15.84

Weight (kDa)

5.12

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020045)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036821
rosa_multiflora Rmu_co7986712.1_g000001 Rmu_sc0006084.1_g000007
rosa_rugosa Rorug05G0464600 Rorug05G0464600
rosa_wichuraiana Rw0G022740 Rw5G048220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AatII GACGTC 1 cut(s) 175
Acc36I ACCTGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 340
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 3 cut(s) 117, 138, 426
AlwI GGATC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 88
BccI CCATC 2 cut(s) 242, 276
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciVI GTATCC 1 cut(s) 326
BclI TGATCA 2 cut(s) 194, 293
BfuAI ACCTGC 1 cut(s) 348
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmcAI AGTACT 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 1 cut(s) 379
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 173, 394
BseMI GCAATG 1 cut(s) 169
BseYI CCCAGC 2 cut(s) 36, 365
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 431
Bsp143I GATC 3 cut(s) 194, 293, 370
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 3 cut(s) 194, 293, 370
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 173, 394
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 3 cut(s) 197, 296, 373
BstMBI GATC 3 cut(s) 194, 293, 370
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 261
BstPAI GACNNNNGTC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 173, 394
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 111
CviAII CATG 5 cut(s) 176, 219, 258, 297, 374
CviJI RGCY 3 cut(s) 27, 273, 325
CviKI_1 RGCY 3 cut(s) 27, 273, 325
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 52
DpnI GATC 3 cut(s) 196, 295, 372
DpnII GATC 3 cut(s) 194, 293, 370
DraI TTTAAA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 5 cut(s) 179, 222, 261, 300, 377
FaiI YATR 8 cut(s) 69, 177, 220, 259, 298, 306, 375, 396
FatI CATG 5 cut(s) 175, 218, 257, 296, 373
FbaI TGATCA 2 cut(s) 194, 293
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 180, 401
Fsp4HI GCNGC 1 cut(s) 10
GlaI GCGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 2 cut(s) 40, 369
HapII CCGG 1 cut(s) 127
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 5 cut(s) 179, 222, 261, 300, 377
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 374, 431
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 2 cut(s) 85, 172
HpyCH4V TGCA 2 cut(s) 218, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 2 cut(s) 85, 172
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 5 cut(s) 179, 222, 261, 300, 377
HspAI GCGC 1 cut(s) 265
Ksp22I TGATCA 2 cut(s) 194, 293
Kzo9I GATC 3 cut(s) 194, 293, 370
LpnPI CCDG 7 cut(s) 13, 22, 140, 288, 340, 343, 351
LweI GCATC 1 cut(s) 379
MaeII ACGT 2 cut(s) 85, 172
MaeIII GTNAC 1 cut(s) 200
MalI GATC 3 cut(s) 196, 295, 372
MboI GATC 3 cut(s) 194, 293, 370
MboII GAAGA 1 cut(s) 93
MluCI AATT 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 173, 339, 372
MseI TTAA 2 cut(s) 145, 186
MspI CCGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 3 cut(s) 194, 293, 370
NlaIII CATG 5 cut(s) 179, 222, 261, 300, 377
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 261
PaeR7I CTCGAG 1 cut(s) 431
PagI TCATGA 1 cut(s) 373
PciI ACATGT 1 cut(s) 257
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 11
PscI ACATGT 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 249
PsiI TTATAA 1 cut(s) 396
PspFI CCCAGC 2 cut(s) 36, 365
PspN4I GGNNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 145, 186
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 194, 293, 370
ScaI AGTACT 1 cut(s) 112
SetI ASST 4 cut(s) 88, 175, 184, 362
SfaNI GCATC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 431
SlaI CTCGAG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 1 cut(s) 340
SspI AATATT 1 cut(s) 400
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 2 cut(s) 88, 175
TaqI TCGA 3 cut(s) 79, 344, 432
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 145, 186
Tru9I TTAA 2 cut(s) 145, 186
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 209
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 261
XhoI CTCGAG 1 cut(s) 431
ZraI GACGTC 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.