Rw0G022740

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01056
Physical Location & Seq
Forward (+)
6052 .. 6360
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022740.1

Sequence Viewer

Length: 309 bp
ATGGATGAAGTCACTAAGATACTGGAGGATGATAACATCACTGTGATTGGGGTGCACGGAAGAGGAGGCGTTGGCAAGACAACCATGGTGAAACATGTCAGTGTACAAGCTGAAAAGGATGGGCTTTTTTATGGGCTTTTTGCTTATGTGATTGTGGTTGTTGTATCCCAAAGCCCTGATTTGCAAAAAATTCAAAGCACATTGGCAGATCTGCTGGGATTGAAATGGTGGAGGAGACAGAAGTTGGAAGAGAGGATCATGATTGAAAATGGGATCCTTATAATCTTGGACGACACATTTGGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

5.6

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 2 - 98 2.7e-11 NB-ARC domain
NACHT PF05729 15 - 98 2e-09 NACHT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020045)

Species Orthologous Gene IDs
rosa_laevigata RLG00000036821
rosa_multiflora Rmu_co7986712.1_g000001 Rmu_sc0006084.1_g000007
rosa_rugosa Rorug05G0464600 Rorug05G0464600
rosa_wichuraiana Rw0G022740 Rw5G048220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AclWI GGATC 3 cut(s) 263, 268, 281
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 1 cut(s) 105
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 194, 223, 266
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 53
AlwI GGATC 3 cut(s) 263, 268, 281
ApaLI GTGCAC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 113
BciVI GTATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 229
BfuI GTATCC 1 cut(s) 175
BglII AGATCT 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 10, 34, 124
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 78, 247
BseSI GKGCMC 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 208, 255, 273
Bsp19I CCATGG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 3 cut(s) 263, 268, 281
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 3 cut(s) 208, 255, 273
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 55, 243
BstAUI TGTACA 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 10, 34, 124
BstKTI GATC 3 cut(s) 211, 258, 276
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 3 cut(s) 208, 255, 273
BstNSI RCATGY 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 208, 273
BstYI RGATCY 2 cut(s) 208, 273
BsuI GTATCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 10, 34, 124
BtsIMutI CAGTG 2 cut(s) 39, 106
CciI TCATGA 1 cut(s) 258
Csp6I GTAC 1 cut(s) 104
CviAII CATG 3 cut(s) 85, 95, 259
CviJI RGCY 4 cut(s) 110, 124, 136, 174
CviKI_1 RGCY 4 cut(s) 110, 124, 136, 174
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 15
DpnI GATC 3 cut(s) 210, 257, 275
DpnII GATC 3 cut(s) 208, 255, 273
Eam1104I CTCTTC 2 cut(s) 55, 243
EarI CTCTTC 2 cut(s) 55, 243
Eco130I CCWWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 88, 98, 262
FaiI YATR 6 cut(s) 86, 96, 132, 147, 260, 281
FatI CATG 3 cut(s) 84, 94, 258
FokI GGATG 3 cut(s) 17, 41, 131
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 44
Hin1II CATG 3 cut(s) 88, 98, 262
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 55, 104
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 55, 104
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 55, 184
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 3 cut(s) 88, 98, 262
Kzo9I GATC 3 cut(s) 208, 255, 273
LpnPI CCDG 3 cut(s) 8, 189, 200
MaeIII GTNAC 1 cut(s) 10
MalI GATC 3 cut(s) 210, 257, 275
MboI GATC 3 cut(s) 208, 255, 273
MboII GAAGA 2 cut(s) 72, 260
MflI RGATCY 2 cut(s) 208, 273
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 5 cut(s) 19, 56, 59, 225, 246
MslI CAYNNNNRTG 2 cut(s) 41, 99
NcoI CCATGG 1 cut(s) 84
NdeII GATC 3 cut(s) 208, 255, 273
NlaIII CATG 3 cut(s) 88, 98, 262
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 98
PagI TCATGA 1 cut(s) 258
PciI ACATGT 1 cut(s) 94
PscI ACATGT 1 cut(s) 94
PsiI TTATAA 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 275
PsuI RGATCY 2 cut(s) 208, 273
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 41, 99
Sau3AI GATC 3 cut(s) 208, 255, 273
SduI GDGCHC 1 cut(s) 57
SetI ASST 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 41, 99
Sse9I AATT 1 cut(s) 189
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 43
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 103
TscAI CASTG 2 cut(s) 46, 106
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 46, 106
VneI GTGCAC 1 cut(s) 53
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.