Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7962200.1

Orthogroup ID

OG0021620

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 393

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7962200.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

gtgttcacttttgacacagatccatgtgagtatttccattcgggcaagattaaagcctcaactctctccctctcagtcttggttgccattgagatgttcaactccctcaatgccctgtctgaggacggtagccttctgacgatgccaccctgggttaatccatggctccttcttgccatgtccgtctccttcgggttgcactttttgattctctacgtgccattccttgctcaagtgttcggcattgtccccctcagcctgaatgaatggctcttggtgttggcagttgcttttccagttgtcttaattgatgaggtgctgaagtttgtaggaagatgtacaactaagttgccagattccgctgtagagaaatccaagcgcaaaacagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

5.26

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021620)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7962200.1_g000001 Rmu_co8346273.1_g000001 Rmu_sc0031207.1_g000001 Rmu_sc0031208.1_g000001 Rmu_ssc0000409.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	149, 150, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	149, 150, 161
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	87, 111, 268
BseNI	ACTGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	360
BspCNI	CTCAG	3 cut(s)	86, 112, 267
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	149, 150, 161
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	217
BstDEI	CTNAG	4 cut(s)	73, 120, 254, 345
BstDSI	CCRYGG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	3 cut(s)	24, 162, 178
CviJI	RGCY	5 cut(s)	56, 132, 166, 258, 271
CviKI_1	RGCY	5 cut(s)	56, 132, 166, 258, 271
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	4 cut(s)	73, 120, 254, 345
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	3 cut(s)	27, 165, 181
FaiI	YATR	3 cut(s)	25, 163, 179
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	23, 161, 177
GlaI	GCGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	27, 165, 181
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	208, 356
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	121, 138
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	143, 179, 199
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	73, 120, 254, 345
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	27, 165, 181
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	6 cut(s)	128, 136, 163, 272, 309, 366
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	216
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	345
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	1 cut(s)	306
MnlI	CCTC	6 cut(s)	67, 80, 115, 116, 263, 307
MseI	TTAA	3 cut(s)	51, 156, 305
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	27, 165, 181
NlaIV	GGNNCC	1 cut(s)	167
PasI	CCCWGGG	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	208, 356
Ppu21I	YACGTR	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	51, 156, 305
Sau3AI	GATC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	2 cut(s)	219, 318
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	219
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	208, 356
Tru1I	TTAA	3 cut(s)	51, 156, 305
Tru9I	TTAA	3 cut(s)	51, 156, 305
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.