Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031207.1

Orthogroup ID

OG0021620

Physical Location & Seq

Genomic Coordinates Forward (+)

21 .. 667

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgaaagcttttatcaggtacatgatttcatcaaacattggcgaagttgcctccatttttctgacagcggccctgggaattccagaaggcatgattccagttcagcttctgtgggtcaacctggttactgatggacccccagcaacagctctaggattcaatcctccggacaaagatataatggagaagccccctagaagaagcaacgactcattgatcagtgtgtggatcttatttcgttatctggtgattggagtctatgttggtgttgcaacagtaggggtgttcattatctggtacacccattcctcatttttgggcattgacctgagtggagatggccat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

5.47

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021620)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7962200.1_g000001 Rmu_co8346273.1_g000001 Rmu_sc0031207.1_g000001 Rmu_sc0031208.1_g000001 Rmu_ssc0000409.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	2 cut(s)	20, 299
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	72, 120
AluBI	AGCT	3 cut(s)	8, 106, 149
AluI	AGCT	3 cut(s)	8, 106, 149
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	2 cut(s)	69, 340
ApoI	RAATTY	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	70, 134
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	342
BccI	CCATC	2 cut(s)	125, 332
BciT130I	CCWGG	2 cut(s)	74, 122
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	2 cut(s)	152, 195
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	74, 122
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	70, 134
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	74, 122
BsaJI	CCNNGG	2 cut(s)	72, 73
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse1I	ACTGG	1 cut(s)	98
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	74, 122
BseDI	CCNNGG	2 cut(s)	72, 73
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	139
BshFI	GGCC	2 cut(s)	71, 342
BsiSI	CCGG	1 cut(s)	167
BsnI	GGCC	2 cut(s)	71, 342
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	216, 228
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	71, 342
BspCNI	CTCAG	1 cut(s)	321
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	72, 73
BssMI	GATC	2 cut(s)	216, 228
Bst2UI	CCWGG	2 cut(s)	74, 122
Bst4CI	ACNGT	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	219, 231
BstMBI	GATC	2 cut(s)	216, 228
BstNI	CCWGG	2 cut(s)	74, 122
BstSCI	CCNGG	2 cut(s)	72, 120
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	71, 342
BtsIMutI	CAGTG	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	70, 134
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	19, 298
CviAII	CATG	2 cut(s)	22, 91
CviJI	RGCY	6 cut(s)	8, 71, 106, 149, 190, 342
CviKI_1	RGCY	6 cut(s)	8, 71, 106, 149, 190, 342
CviQI	GTAC	2 cut(s)	19, 298
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	2 cut(s)	218, 230
DpnII	GATC	2 cut(s)	216, 228
EaeI	YGGCCR	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	72, 120
FaeI	CATG	2 cut(s)	25, 94
FaiI	YATR	4 cut(s)	23, 92, 179, 261
FatI	CATG	2 cut(s)	21, 90
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	152, 195
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	71, 342
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	2 cut(s)	25, 94
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	4 cut(s)	94, 156, 209, 255
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	118, 300
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	83, 167
Hpy8I	GTNNAC	2 cut(s)	118, 300
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	25, 94
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	216, 228
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	2 cut(s)	152, 195
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	218, 230
MboI	GATC	2 cut(s)	216, 228
MboII	GAAGA	1 cut(s)	210
MflI	RGATCY	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	203, 264
MnlI	CCTC	3 cut(s)	61, 174, 319
Mox20I	TGGCCA	1 cut(s)	342
MroI	TCCGGA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	74, 122
MvaI	CCWGG	2 cut(s)	74, 122
NdeII	GATC	2 cut(s)	216, 228
NlaIII	CATG	2 cut(s)	25, 94
NlaIV	GGNNCC	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	94, 156
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	203, 263
PpsI	GAGTC	2 cut(s)	203, 263
Psp6I	CCWGG	2 cut(s)	72, 120
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	2 cut(s)	72, 120
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	70, 134
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	20, 299
RsaNI	GTAC	2 cut(s)	19, 298
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	216, 228
Sau96I	GGNCC	2 cut(s)	70, 134
SchI	GAGTC	2 cut(s)	203, 264
ScrFI	CCNGG	2 cut(s)	74, 122
SetI	ASST	6 cut(s)	10, 20, 108, 123, 151, 330
SexAI	ACCWGGT	1 cut(s)	120
SinI	GGWCC	1 cut(s)	134
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	152, 195
StyD4I	CCNGG	2 cut(s)	72, 120
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	1 cut(s)	78
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	94, 156
TscAI	CASTG	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	17, 18, 277
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	78
XspI	CTAG	2 cut(s)	152, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.