Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031208.1

Orthogroup ID

OG0021620

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 667

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031208.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 365 bp

gcagatctatttacaacaacatgaaagcttttatcaggtacatgatttcatcaaacattggcgaagttgcctccatttttctgacagcggccctgggaattccagaaggcatgattccagttcagcttctgtgggtcaacctggttactgatggacccccagcaacagctctaggattcaatcctccagacaaagatataatggagaagccccctagaagaagtaacgactcattgatcagtgtgtggatcttatttcgttatctggtgattggagtctatgtcggtgttgcaacagtaggggtgttcattatctggtacacccattcctcatttttgggcattgacctgagtggagatggccat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

121

Amino Acids

13.33

Weight (kDa)

6.06

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021620)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7962200.1_g000001 Rmu_co8346273.1_g000001 Rmu_sc0031207.1_g000001 Rmu_sc0031208.1_g000001 Rmu_ssc0000409.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	2 cut(s)	40, 319
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	2 cut(s)	92, 140
AluBI	AGCT	3 cut(s)	28, 126, 169
AluI	AGCT	3 cut(s)	28, 126, 169
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	89, 360
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	90, 154
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	362
BccI	CCATC	2 cut(s)	145, 352
BciT130I	CCWGG	2 cut(s)	94, 142
BclI	TGATCA	1 cut(s)	236
BfaI	CTAG	2 cut(s)	172, 215
BglII	AGATCT	1 cut(s)	4
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	94, 142
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	90, 154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	94, 142
BpmI	CTGGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	92, 93
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	94, 142
BseDI	CCNNGG	2 cut(s)	92, 93
BseMII	CTCAG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	91, 362
BsnI	GGCC	2 cut(s)	91, 362
Bsp143I	GATC	3 cut(s)	4, 236, 248
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	91, 362
BspCNI	CTCAG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	92, 93
BssMI	GATC	3 cut(s)	4, 236, 248
Bst2UI	CCWGG	2 cut(s)	94, 142
Bst4CI	ACNGT	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	349
BstKTI	GATC	3 cut(s)	7, 239, 251
BstMBI	GATC	3 cut(s)	4, 236, 248
BstNI	CCWGG	2 cut(s)	94, 142
BstSCI	CCNGG	2 cut(s)	92, 140
BstX2I	RGATCY	2 cut(s)	4, 248
BstYI	RGATCY	2 cut(s)	4, 248
BsuRI	GGCC	2 cut(s)	91, 362
BtsIMutI	CAGTG	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	90, 154
CsiI	ACCWGGT	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	39, 318
CviAII	CATG	3 cut(s)	21, 42, 111
CviJI	RGCY	6 cut(s)	28, 91, 126, 169, 210, 362
CviKI_1	RGCY	6 cut(s)	28, 91, 126, 169, 210, 362
CviQI	GTAC	2 cut(s)	39, 318
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	3 cut(s)	6, 238, 250
DpnII	GATC	3 cut(s)	4, 236, 248
EaeI	YGGCCR	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	92, 140
FaeI	CATG	3 cut(s)	24, 45, 114
FaiI	YATR	5 cut(s)	22, 43, 112, 199, 281
FatI	CATG	3 cut(s)	20, 41, 110
FbaI	TGATCA	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	172, 215
GluI	GCNGC	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	91, 362
Hin1II	CATG	3 cut(s)	24, 45, 114
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	4 cut(s)	114, 176, 229, 275
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	2 cut(s)	138, 320
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	103, 187
Hpy8I	GTNNAC	2 cut(s)	138, 320
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	24, 45, 114
Ksp22I	TGATCA	1 cut(s)	236
Kzo9I	GATC	3 cut(s)	4, 236, 248
MabI	ACCWGGT	1 cut(s)	140
MaeI	CTAG	2 cut(s)	172, 215
MaeIII	GTNAC	2 cut(s)	144, 223
MalI	GATC	3 cut(s)	6, 238, 250
MboI	GATC	3 cut(s)	4, 236, 248
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	2 cut(s)	4, 248
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	223, 284
MnlI	CCTC	3 cut(s)	81, 194, 339
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	88
MspR9I	CCNGG	2 cut(s)	94, 142
MvaI	CCWGG	2 cut(s)	94, 142
NdeII	GATC	3 cut(s)	4, 236, 248
NlaIII	CATG	3 cut(s)	24, 45, 114
NlaIV	GGNNCC	1 cut(s)	156
PasI	CCCWGGG	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	114, 176
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	2 cut(s)	223, 283
PpsI	GAGTC	2 cut(s)	223, 283
Psp6I	CCWGG	2 cut(s)	92, 140
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	92, 140
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	90, 154
PstNI	CAGNNNCTG	1 cut(s)	129
PsuI	RGATCY	2 cut(s)	4, 248
RsaI	GTAC	2 cut(s)	40, 319
RsaNI	GTAC	2 cut(s)	39, 318
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	4, 236, 248
Sau96I	GGNCC	2 cut(s)	90, 154
SchI	GAGTC	2 cut(s)	223, 284
ScrFI	CCNGG	2 cut(s)	94, 142
SetI	ASST	6 cut(s)	30, 40, 128, 143, 171, 350
SexAI	ACCWGGT	1 cut(s)	140
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	172, 215
StyD4I	CCNGG	2 cut(s)	92, 140
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	1 cut(s)	98
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	114, 176
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	37, 38, 297
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	98
XspI	CTAG	2 cut(s)	172, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.