Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346273.1

Orthogroup ID

OG0021620

Physical Location & Seq

Genomic Coordinates Reverse (-)

423 .. 938

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346273.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggtatcgacctcagtggggatggccactcccttgttacttactcccaacttgccaactggggacagtgctcaacttggcagaactttactgcttcacctttcacagctggaaatgaggttatctcgtttgacaaaaacccatgcgattatttccatggcggcaaagttaaggctatgaccctctccctctctgtgttggttgccatcgaaatgttcaactcgctcaatgccctttctgaggatggaagcctgttgacaatgcctccatgggtcaacccttggctccttgtggccatgtctgtttcatttggccttcatttcttgatcctgtatgtgcctttcctagctcaaatattcggcattgtacccctgagtctaaacgaatggctgttggttttggccgtttcattgccggtgattctcattgatgagatcctcaagttagtcggcagatggacaagcaagtctcatgtatccaggaggagaaaaccatcaaagcccaaggcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

171

Amino Acids

18.91

Weight (kDa)

6.9

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021620)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7962200.1_g000001 Rmu_co8346273.1_g000001 Rmu_sc0031207.1_g000001 Rmu_sc0031208.1_g000001 Rmu_ssc0000409.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	322, 430
AcoI	YGGCCR	3 cut(s)	25, 294, 402
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	19, 241
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	2 cut(s)	110, 350
AluI	AGCT	2 cut(s)	110, 350
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	322, 430
AoxI	GGCC	4 cut(s)	25, 294, 313, 402
AsuHPI	GGTGA	2 cut(s)	90, 430
BalI	TGGCCA	2 cut(s)	27, 296
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	5 cut(s)	17, 215, 239, 450, 502
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	481
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	481
BmrI	ACTGGG	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	157, 269, 281, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 241
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	4 cut(s)	157, 269, 281, 504
BseGI	GGATG	2 cut(s)	28, 250
BseLI	CCNNNNNNNGG	2 cut(s)	19, 241
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	28, 231, 365
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	499
BshFI	GGCC	4 cut(s)	27, 296, 315, 404
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	19, 241
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	27, 296, 315, 404
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	327, 435
Bsp19I	CCATGG	2 cut(s)	157, 269
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	4 cut(s)	27, 296, 315, 404
BspCNI	CTCAG	3 cut(s)	27, 232, 366
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	322, 430
BsrDI	GCAATG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	157, 269, 281, 504
BssMI	GATC	2 cut(s)	327, 435
BssT1I	CCWWGG	4 cut(s)	157, 269, 281, 504
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	14, 240, 374
BstDSI	CCRYGG	2 cut(s)	157, 269
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	28, 250
BstKTI	GATC	2 cut(s)	330, 438
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	327, 435
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	4 cut(s)	27, 296, 315, 404
BtgI	CCRYGG	2 cut(s)	157, 269
BtsCI	GGATG	2 cut(s)	28, 250
BtsIMutI	CAGTG	2 cut(s)	22, 74
Cfr10I	RCCGGY	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	5 cut(s)	144, 158, 270, 298, 473
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	14, 240, 374
DpnI	GATC	2 cut(s)	329, 437
DpnII	GATC	2 cut(s)	327, 435
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	3 cut(s)	25, 294, 402
Eco130I	CCWWGG	4 cut(s)	157, 269, 281, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	4 cut(s)	157, 269, 281, 504
ErhI	CCWWGG	4 cut(s)	157, 269, 281, 504
FaeI	CATG	5 cut(s)	147, 161, 273, 301, 476
FaiI	YATR	7 cut(s)	145, 159, 179, 271, 299, 336, 474
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	5 cut(s)	143, 157, 269, 297, 472
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	35, 257
Fsp4HI	GCNGC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	1 cut(s)	163
HaeIII	GGCC	4 cut(s)	27, 296, 315, 404
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	5 cut(s)	147, 161, 273, 301, 476
HincII	GTYRAC	2 cut(s)	258, 277
HindII	GTYRAC	2 cut(s)	258, 277
HinfI	GANTC	2 cut(s)	376, 421
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	2 cut(s)	90, 430
Hpy166II	GTNNAC	2 cut(s)	258, 277
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	2 cut(s)	258, 277
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	69
HpyF3I	CTNAG	3 cut(s)	14, 240, 374
Hsp92II	CATG	5 cut(s)	147, 161, 273, 301, 476
Kzo9I	GATC	2 cut(s)	327, 435
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	8 cut(s)	46, 96, 266, 344, 386, 429, 466, 493
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	329, 437
MboI	GATC	2 cut(s)	327, 435
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	74
MlsI	TGGCCA	2 cut(s)	27, 296
MluNI	TGGCCA	2 cut(s)	27, 296
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	8 cut(s)	23, 112, 194, 200, 235, 276, 449, 477
Mox20I	TGGCCA	2 cut(s)	27, 296
MscI	TGGCCA	2 cut(s)	27, 296
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	2 cut(s)	27, 296
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
NcoI	CCATGG	2 cut(s)	157, 269
NdeII	GATC	2 cut(s)	327, 435
NlaIII	CATG	5 cut(s)	147, 161, 273, 301, 476
NlaIV	GGNNCC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	2 cut(s)	327, 435
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	15, 103, 112, 123, 352
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SsiI	CCGC	1 cut(s)	162
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	4 cut(s)	157, 269, 281, 504
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	9, 210
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	22, 74
TspDTI	ATGAA	3 cut(s)	297, 308, 399
TspRI	CASTG	2 cut(s)	22, 74
XagI	CCTNNNNNAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.