Rmu_co7972084.1_g000001

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7972084.1
OG0018053
Physical Location & Seq
Forward (+)
72 .. 509
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7972084.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atgtggagaggaattcgtctacaactctgcctcttactagcctaccccatactttggttcatcttttgtcccaaagatcccaaattcatcatcacagatgcctctctaacccaattcaatttcaccaaccacaacaagaccctcgactacaacctcgcgctcaacatcaccatcaccaaccccaacagaaaggctgccatattctacggtaaaatacaagtcgcgtctacctacagaaacaaagtattttctatcgtgactttaccttttgaaccatttggccaatgcggcaagaacagaaccatttcgcatcacatacctcttaaagggagcaagtctctggtgtttggagaacgggagatttcccagtttaactcggagactgttgctggcgtttacagtattgacgtgaggctttatgttgggataaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

144

Amino Acids

16.51

Weight (kDa)

9.75

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018053)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18560
rosa_chinensis RchiOBHm_Chr3g0473111
rosa_laevigata RLG00000024027
rosa_multiflora Rmu_co7972084.1_g000001 Rmu_sc0016115.1_g000005
rosa_rugosa Rorug03G0131800
rosa_samantha Rh3AG183100 Rh3BG209600 Rh3CG206600
rosa_wichuraiana Rw0G008070 Rw0G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 54
AccI GTMKAC 2 cut(s) 19, 227
AccII CGCG 2 cut(s) 158, 224
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 12, 83
AfiI CCNNNNNNNGG 2 cut(s) 54, 326
AgsI TTSAA 2 cut(s) 118, 272
AjiI CACGTC 1 cut(s) 409
Alw26I GTCTC 2 cut(s) 342, 374
AlwI GGATC 1 cut(s) 71
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 12, 83
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 115, 160, 166
BalI TGGCCA 1 cut(s) 282
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 342, 374
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 2 cut(s) 195, 289
BlsI GCNGC 2 cut(s) 196, 290
BmgBI CACGTC 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 88, 319
BmuI ACTGGG 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 322, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 326
Bse1I ACTGG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 54, 326
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 2 cut(s) 158, 224
BshFI GGCC 1 cut(s) 282
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 54, 326
BsmAI GTCTC 2 cut(s) 342, 374
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 282
BspFNI CGCG 2 cut(s) 158, 224
BspPI GGATC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 367
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 209, 385, 401
BstC8I GCNNGC 1 cut(s) 391
BstENI CCTNNNNNAGG 1 cut(s) 324
BstFNI CGCG 2 cut(s) 158, 224
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 342, 374
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 2 cut(s) 158, 224
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 282
BtrI CACGTC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 1 cut(s) 160
CseI GACGC 1 cut(s) 213
CviJI RGCY 4 cut(s) 41, 194, 282, 415
CviKI_1 RGCY 4 cut(s) 41, 194, 282, 415
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 12
FaiI YATR 4 cut(s) 50, 200, 317, 420
FaqI GGGAC 1 cut(s) 54
FblI GTMKAC 2 cut(s) 19, 227
Fnu4HI GCNGC 2 cut(s) 195, 289
Fsp4HI GCNGC 2 cut(s) 195, 289
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 195, 289
HaeIII GGCC 1 cut(s) 282
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 160
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HphI GGTGA 3 cut(s) 115, 160, 166
Hpy166II GTNNAC 3 cut(s) 20, 228, 397
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 3 cut(s) 20, 228, 397
HpyCH4III ACNGT 3 cut(s) 209, 385, 401
HpyCH4IV ACGT 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 408
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 3 cut(s) 326, 375, 380
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 88, 319
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MflI RGATCY 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 4 cut(s) 12, 83, 113, 118
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 6 cut(s) 41, 112, 152, 164, 330, 405
Mox20I TGGCCA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 324, 372
Msp20I TGGCCA 1 cut(s) 282
MvnI CGCG 2 cut(s) 158, 224
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 54
PkrI GCNGC 2 cut(s) 196, 290
PsuI RGATCY 1 cut(s) 76
SaqAI TTAA 2 cut(s) 324, 372
SatI GCNGC 2 cut(s) 195, 289
Sau3AI GATC 1 cut(s) 76
SetI ASST 5 cut(s) 156, 233, 268, 322, 411
SfaNI GCATC 2 cut(s) 88, 319
SfcI CTRYAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 12, 83, 113, 118
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 3 cut(s) 209, 385, 401
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 144
TasI AATT 4 cut(s) 12, 83, 113, 118
TauI GCSGC 1 cut(s) 291
Tru1I TTAA 2 cut(s) 324, 372
Tru9I TTAA 2 cut(s) 324, 372
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 49, 76
Van91I CCANNNNNTGG 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 2 cut(s) 12, 83
XmiI GTMKAC 2 cut(s) 19, 227
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.