Rh3CG206600

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018053
Physical Location & Seq
Forward (+)
18846734 .. 18847513
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG206600.1

Sequence Viewer

Length: 681 bp
ATGTGGAGAGGAATTCGTCTACAACTCTGCCTCTTACTAGCCTACCCCATACTCTGGTTCATCTTTTGTCCCAAAGATCCCAAATTCATCATCACAGATGCCTCTCTAACCCAATTCAATTTCACCAACCACAACAAGACCCTCGACTACAACCTTGCACTCAACATCACCATCACCAACCCCAACAGAAAGGCTGCCATATTCTACGGTAAAATACAAGTCGCGTCTACCTACAGAAACAAAGTATTTTCTATCGTGACTTTACCTTTTGAACCATTTGGCCAATGCGGCAAGAACAGAACCATTTCGCATCACATACCTCTTAAAGGGAGCAAGTCTCTGGTGTTTGGAGAACGGGAGATTTCCCAGTTTAACTCGGAGACTGTTGCTGGCGTTTACAGTATTGACGTGAGGCTTTATGTTGGGATAAGAGTATTCGGCGGGTACTTCAAGACAAGACATTCCAACCCATCGCACAAGATCGACTGCAAGCTGAAAGTTCCTTTGCAGTCTAGTGAAACATCTACAAATCGCTTCACTTTCAAGACAACCAAGTGCAGAAATGATATATCATTGCAGACCCTGAAGCAGCGGGCTGAATCTGTCCAGTTTTTCCTTGGTGACTCGACTGTCCAAGTGTTGCTTGTTTGTATCTATATTTTTGCAGCAGTGCGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

226

Amino Acids

25.79

Weight (kDa)

9.83

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018053)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18560
rosa_chinensis RchiOBHm_Chr3g0473111
rosa_laevigata RLG00000024027
rosa_multiflora Rmu_co7972084.1_g000001 Rmu_sc0016115.1_g000005
rosa_rugosa Rorug03G0131800
rosa_samantha Rh3AG183100 Rh3BG209600 Rh3CG206600
rosa_wichuraiana Rw0G008070 Rw0G014700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 54
AccI GTMKAC 2 cut(s) 19, 227
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 288, 441, 592
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 12, 83
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 54, 326
AgsI TTSAA 4 cut(s) 118, 272, 451, 544
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
Alw26I GTCTC 2 cut(s) 342, 374
AlwI GGATC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 583
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 194, 589, 665
ApoI RAATTY 2 cut(s) 12, 83
Asp700I GAANNNNTTC 1 cut(s) 304
AsuHPI GGTGA 4 cut(s) 115, 160, 166, 632
BalI TGGCCA 1 cut(s) 282
BbvI GCAGC 3 cut(s) 181, 601, 677
BccI CCATC 2 cut(s) 179, 478
BcoDI GTCTC 2 cut(s) 342, 374
BfaI CTAG 2 cut(s) 38, 513
BfmI CTRYAG 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 288
BisI GCNGC 4 cut(s) 195, 289, 590, 666
BlsI GCNGC 4 cut(s) 196, 290, 591, 667
BmgBI CACGTC 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 88, 319
BmuI ACTGGG 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 326
Bse1I ACTGG 2 cut(s) 367, 607
Bse3DI GCAATG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 616
BseLI CCNNNNNNNGG 2 cut(s) 54, 326
BseMI GCAATG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 367, 607
BseXI GCAGC 3 cut(s) 181, 601, 677
BsgI GTGCAG 1 cut(s) 577
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 282
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 54, 326
BsmAI GTCTC 2 cut(s) 342, 374
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 76, 480
BspACI CCGC 3 cut(s) 288, 441, 592
BspANI GGCC 1 cut(s) 282
BspFNI CGCG 1 cut(s) 224
BspPI GGATC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 2 cut(s) 367, 607
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 2 cut(s) 76, 480
BssT1I CCWWGG 1 cut(s) 616
Bst4CI ACNGT 4 cut(s) 209, 385, 401, 631
BstC8I GCNNGC 3 cut(s) 391, 491, 594
BstENI CCTNNNNNAGG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 2 cut(s) 79, 483
BstMAI GTCTC 2 cut(s) 342, 374
BstMBI GATC 2 cut(s) 76, 480
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 232
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 181, 601, 677
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 456
BtrI CACGTC 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 3 cut(s) 391, 491, 594
CaiI CAGNNNCTG 1 cut(s) 583
CseI GACGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 445
CviJI RGCY 6 cut(s) 41, 194, 282, 415, 493, 596
CviKI_1 RGCY 6 cut(s) 41, 194, 282, 415, 493, 596
CviQI GTAC 1 cut(s) 445
DpnI GATC 2 cut(s) 78, 482
DpnII GATC 2 cut(s) 76, 480
DrdI GACNNNNNNGTC 1 cut(s) 629
DseDI GACNNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 605
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaiI YATR 6 cut(s) 50, 200, 317, 420, 569, 657
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 54
FauI CCCGC 2 cut(s) 434, 585
FblI GTMKAC 2 cut(s) 19, 227
Fnu4HI GCNGC 4 cut(s) 195, 289, 590, 666
Fsp4HI GCNGC 4 cut(s) 195, 289, 590, 666
FspBI CTAG 2 cut(s) 38, 513
GluI GCNGC 4 cut(s) 195, 289, 590, 666
HaeIII GGCC 1 cut(s) 282
HgaI GACGC 1 cut(s) 213
HinfI GANTC 2 cut(s) 599, 623
HphI GGTGA 4 cut(s) 115, 160, 166, 632
Hpy166II GTNNAC 3 cut(s) 20, 228, 397
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 256, 451, 544
Hpy8I GTNNAC 3 cut(s) 20, 228, 397
HpyCH4III ACNGT 4 cut(s) 209, 385, 401, 631
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 6 cut(s) 158, 489, 508, 558, 577, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 408
Kzo9I GATC 2 cut(s) 76, 480
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 6 cut(s) 40, 326, 375, 380, 596, 620
Lsp1109I GCAGC 3 cut(s) 181, 601, 677
LweI GCATC 2 cut(s) 88, 319
MaeI CTAG 2 cut(s) 38, 513
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 256, 620
MalI GATC 2 cut(s) 78, 482
MboI GATC 2 cut(s) 76, 480
MflI RGATCY 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 4 cut(s) 12, 83, 113, 118
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 5 cut(s) 41, 112, 152, 330, 405
Mox20I TGGCCA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 282
MseI TTAA 3 cut(s) 324, 372, 679
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 592
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 2 cut(s) 76, 480
NmuCI GTSAC 2 cut(s) 256, 620
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 54
PkrI GCNGC 4 cut(s) 196, 290, 591, 667
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SaqAI TTAA 3 cut(s) 324, 372, 679
SatI GCNGC 4 cut(s) 195, 289, 590, 666
Sau3AI GATC 2 cut(s) 76, 480
SchI GAGTC 1 cut(s) 617
SetI ASST 6 cut(s) 156, 233, 268, 322, 411, 495
SfaNI GCATC 2 cut(s) 88, 319
SfcI CTRYAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 12, 83, 113, 118
SsiI CCGC 3 cut(s) 288, 441, 592
SspMI CTAG 2 cut(s) 38, 513
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 4 cut(s) 209, 385, 401, 631
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 144, 483, 626
TasI AATT 4 cut(s) 12, 83, 113, 118
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 3 cut(s) 324, 372, 679
Tru9I TTAA 3 cut(s) 324, 372, 679
TscAI CASTG 1 cut(s) 675
TseFI GTSAC 2 cut(s) 256, 620
TseI GCWGC 3 cut(s) 194, 589, 665
Tsp45I GTSAC 2 cut(s) 256, 620
TspDTI ATGAA 2 cut(s) 49, 76
TspRI CASTG 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 2 cut(s) 12, 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmiI GTMKAC 2 cut(s) 19, 227
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 2 cut(s) 38, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.