Rmu_co8014260.1_g000001

Belongs to the histone H2B family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8014260.1
OG0019124
Physical Location & Seq
Forward (+)
1 .. 302
302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8014260.1_g000001.1.cds

Sequence Viewer

Length: 237 bp
gtgcaccctgacattgggatatcgagcaaggccatggggattatgaacagtttcatcaatgacatatttgagaagctggctgccgactcttccaagcttgcgaggtacaataagcagatgacgatcacttcgagggagattcaaactgcggtgaggttggtgcttcctggtgagtttgctaagcacgctgtttctgaggggactaaggctgtgactaagtttactactactaaatag

Protein Analysis

78

Amino Acids

8.54

Weight (kDa)

9.7

Isoelectric Point (pI)

21.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019124)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056591
rosa_laevigata RLG00000035109
rosa_multiflora Rmu_co8014260.1_g000001 Rmu_sc0004101.1_g000046
rosa_samantha Rh5AG371300 Rh5BG382700 Rh5CG406000
rosa_wichuraiana Rw5G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 2 cut(s) 76, 97
AluI AGCT 2 cut(s) 76, 97
Alw21I GWGCWC 1 cut(s) 6
Alw44I GTGCAC 1 cut(s) 2
AoxI GGCC 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 2
ApeKI GCWGC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 163, 182
BaeGI GKGCMC 1 cut(s) 6
Bbv12I GWGCWC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 168
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 6
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 6
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 6
Bsp143I GATC 1 cut(s) 123
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 78, 99, 186
BstDEI CTNAG 4 cut(s) 180, 195, 204, 216
BstDSI CCRYGG 1 cut(s) 33
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 78, 99, 186
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 32, 76, 80, 97, 209
CviKI_1 RGCY 5 cut(s) 32, 76, 80, 97, 209
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 4 cut(s) 180, 195, 204, 216
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 33
Eco32I GATATC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 44, 65
FaqI GGGAC 1 cut(s) 214
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 2 cut(s) 86, 139
HphI GGTGA 2 cut(s) 163, 182
Hpy166II GTNNAC 2 cut(s) 4, 222
Hpy188I TCNGA 1 cut(s) 196
Hpy8I GTNNAC 2 cut(s) 4, 222
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 4 cut(s) 180, 195, 204, 216
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 4 cut(s) 21, 62, 153, 180
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 6
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 96, 126, 147, 190
MroXI GAANNNNTTC 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 123
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 6
SetI ASST 4 cut(s) 78, 99, 107, 158
SsiI CCGC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 23, 131
TfiI GAWTC 1 cut(s) 139
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 43, 59
VneI GTGCAC 1 cut(s) 2
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.