Rmu_sc0004101.1_g000046

histone H2B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004101.1
OG0019124
Physical Location & Seq
Forward (+)
213812 .. 214228
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004101.1_g000046.1.cds

Sequence Viewer

Length: 417 bp
atggcaccaaaggcagagaagaagccggctgggaagaaaccggcggaggagaagctagccgagaaagctcccgctgagaagaagcttccggcatcgaaggacgctgccgagaagaagaagaagcgtccgaagaagagcgtggaaacctacaagacctacatcttcaaggtgctgaagcaggtgcaccctgacattgggatctcgagcaaggccatggggatcatgaacagtttcatcaatgacatatttgagaagctggctgccgagtcttccaagcttgcgagatacaataagcagatgacgatcacgtcaagggagattcagactgcggtgaggttggtgcttcctggtgagcttgccaagcacgctgtttctgaggggactaaagcggtgactaagtttactagttctaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

9.97

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019124)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056591
rosa_laevigata RLG00000035109
rosa_multiflora Rmu_co8014260.1_g000001 Rmu_sc0004101.1_g000046
rosa_samantha Rh5AG371300 Rh5BG382700 Rh5CG406000
rosa_wichuraiana Rw5G034780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 169
AasI GACNNNNNNGTC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 4 cut(s) 44, 72, 329, 389
AclWI GGATC 2 cut(s) 206, 227
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 166
AhlI ACTAGT 1 cut(s) 404
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 6 cut(s) 55, 68, 85, 256, 277, 355
AluI AGCT 6 cut(s) 55, 68, 85, 256, 277, 355
Alw21I GWGCWC 1 cut(s) 186
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 2 cut(s) 206, 227
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 104, 260
Asp700I GAANNNNTTC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 343, 362, 403
AsuNHI GCTAGC 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 91, 247
BciT130I CCWGG 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 2 cut(s) 56, 405
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 2 cut(s) 105, 261
BlsI GCNGC 2 cut(s) 106, 262
Bme1390I CCNGG 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 101
BmtI GCTAGC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 2 cut(s) 25, 40
Bse8I GATNNNNATC 1 cut(s) 302
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 66, 366
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 2 cut(s) 91, 247
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 3 cut(s) 26, 41, 89
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 198, 219, 303
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 4 cut(s) 44, 72, 329, 389
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 67, 367
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 169
BspOI GCTAGC 1 cut(s) 59
BspPI GGATC 2 cut(s) 206, 227
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 2 cut(s) 25, 40
BssAI RCCGGY 2 cut(s) 25, 40
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 198, 219, 303
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 6 cut(s) 27, 57, 258, 279, 357, 366
BstDEI CTNAG 3 cut(s) 75, 375, 396
BstDSI CCRYGG 1 cut(s) 213
BstKTI GATC 3 cut(s) 201, 222, 306
BstMBI GATC 3 cut(s) 198, 219, 303
BstMWI GCNNNNNNNGC 4 cut(s) 11, 65, 361, 365
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 91, 247
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 309
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 6 cut(s) 27, 57, 258, 279, 357, 366
CciI TCATGA 1 cut(s) 222
Cfr10I RCCGGY 2 cut(s) 25, 40
CseI GACGC 2 cut(s) 110, 113
CviAII CATG 2 cut(s) 214, 223
DdeI CTNAG 3 cut(s) 75, 375, 396
DpnI GATC 3 cut(s) 200, 221, 305
DpnII GATC 3 cut(s) 198, 219, 303
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 217, 226
FaiI YATR 3 cut(s) 215, 224, 245
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 213, 222
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 105, 261
Fsp4HI GCNGC 2 cut(s) 105, 261
FspBI CTAG 2 cut(s) 56, 405
GluI GCNGC 2 cut(s) 105, 261
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 212
HapII CCGG 3 cut(s) 26, 41, 89
HgaI GACGC 2 cut(s) 110, 113
Hin1II CATG 2 cut(s) 217, 226
HindIII AAGCTT 2 cut(s) 83, 275
HinfI GANTC 2 cut(s) 266, 319
HpaII CCGG 3 cut(s) 26, 41, 89
HphI GGTGA 3 cut(s) 343, 362, 403
Hpy166II GTNNAC 2 cut(s) 184, 402
Hpy188I TCNGA 3 cut(s) 129, 324, 376
Hpy188III TCNNGA 2 cut(s) 202, 223
Hpy8I GTNNAC 2 cut(s) 184, 402
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 65, 361, 365
HpyF3I CTNAG 3 cut(s) 75, 375, 396
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 2 cut(s) 217, 226
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 3 cut(s) 198, 219, 303
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 15, 39, 54, 102, 164, 201, 242, 333, 360
Lsp1109I GCAGC 2 cut(s) 91, 247
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 56, 405
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 200, 221, 305
MboI GATC 3 cut(s) 198, 219, 303
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 3 cut(s) 40, 327, 370
MroNI GCCGGC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 26, 41, 89
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 4 cut(s) 11, 65, 361, 365
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 1 cut(s) 213
NdeII GATC 3 cut(s) 198, 219, 303
NgoMIV GCCGGC 1 cut(s) 25
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 217, 226
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 3 cut(s) 85, 133, 289
NmuCI GTSAC 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 202
PagI TCATGA 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 106, 262
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 105, 261
Sau3AI GATC 3 cut(s) 198, 219, 303
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SpeI ACTAGT 1 cut(s) 404
Sse9I AATT 1 cut(s) 412
SsiI CCGC 4 cut(s) 44, 72, 329, 389
SspMI CTAG 2 cut(s) 56, 405
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 95, 203
TasI AATT 1 cut(s) 412
TfiI GAWTC 1 cut(s) 319
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 104, 260
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 223, 239
VneI GTGCAC 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 56, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.