Rmu_co8023858.1_g000001

Plant family of unknown function (DUF810)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8023858.1
Physical Location & Seq
Forward (+)
86 .. 541
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8023858.1_g000001.1.cds

Sequence Viewer

Length: 254 bp
atggacgaggaaaatgctgtggagcttttacagaggtttcgccgcgacaggcgaatactgcttgattttgtactggctggtagcttaatcaagaaggtcataatgcctcccggggcggttacgctggacgatgtcgatctagaccaagtcagtgttgattatgtgctcaattgtgctaagaaaggtggaatgcttgaactgtctgaggctattagggactatcatgaccataccgggttgcctcaaatggtatg
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.5

Weight (kDa)

4.8

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023048)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 43, 116
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 2 cut(s) 25, 84
AluI AGCT 2 cut(s) 25, 84
Alw21I GWGCWC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 110
AsuC2I CCSGG 3 cut(s) 111, 112, 235
AvaI CYCGRG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 168
BcgI CGANNNNNNTGC 1 cut(s) 30
BcnI CCSGG 3 cut(s) 111, 112, 235
BfaI CTAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 3 cut(s) 111, 112, 235
BmeT110I CYCGRG 1 cut(s) 110
BmrFI CCNGG 3 cut(s) 111, 112, 235
BpuMI CCSGG 3 cut(s) 111, 112, 235
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 110, 111
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 110, 111
BseJI GATNNNNATC 1 cut(s) 135
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 111, 234
BslFI GGGAC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 43, 116
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 110, 111
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 177, 204
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 109, 110, 233
BstUI CGCG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 157
CciI TCATGA 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 25, 77, 84, 209
CviKI_1 RGCY 4 cut(s) 25, 77, 84, 209
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 2 cut(s) 177, 204
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 101, 162, 225, 231, 253
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 43
HapII CCGG 2 cut(s) 111, 234
Hin1II CATG 1 cut(s) 227
HpaII CCGG 2 cut(s) 111, 234
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 91, 140, 224
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 177, 204
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 34, 59, 63, 110, 124, 247
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MfeI CAATTG 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 27, 117, 199, 252
MseI TTAA 1 cut(s) 86
MspI CCGG 2 cut(s) 111, 234
MspR9I CCNGG 3 cut(s) 111, 112, 235
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 3 cut(s) 111, 112, 235
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 227
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 195
PflFI GACNNNGTC 2 cut(s) 131, 146
PkrI GCNGC 1 cut(s) 44
PsyI GACNNNGTC 2 cut(s) 131, 146
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 3 cut(s) 111, 112, 235
SduI GDGCHC 1 cut(s) 168
SetI ASST 5 cut(s) 27, 38, 86, 99, 187
SmaI CCCGGG 1 cut(s) 112
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 43, 116
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 109, 110, 233
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 157
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 2 cut(s) 131, 146
XbaI TCTAGA 1 cut(s) 139
XmaI CCCGGG 1 cut(s) 110
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.