Rmu_sc0002687.1_g000002

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002687.1
OG0023048
Physical Location & Seq
Reverse (-)
9873 .. 11090
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002687.1_g000002.1.cds

Sequence Viewer

Length: 609 bp
atggacgaggaaaatgctgtggagcttttacagaggtttcgccgcgacaggcgaatactgcttgattttgtactggctggtagcttaatcaagaaggtcataatgcctcccggggcggttacgctggacgatgtcgatctagaccaagtcagtgttgattatgtgctcaattgtgctaagaaaggtggaatgcttgaactgtctgaggctattagggactatcatgaccataccgggttgcctcaaatgaataattctggttctactggtgaatactttttggttacgaatcctgagtcttacggttctcctccaatgagggcaccaccacctgttccagactacacaccgcctcctgttctcgcgccacctcctgtaatcacaccatctattccagaccttgactcatctccagtcgaatcgaatgtatcacaatctgaatcttttaactccacacaagttcgagaacttactgtagatgatattgaagattttgaggatgatgatttagatgagactgacagtctcaggatttcaagaaggattcgtaatgatgctgctgatcttgctcttggattgccttcttttaaaacaggtaagagtctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0009987 GO:0010118 GO:0016020 GO:0030054 GO:0044424 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

202

Amino Acids

22.26

Weight (kDa)

4.3

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023048)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8023858.1_g000001 Rmu_co8156248.1_g000001 Rmu_sc0000530.1_g000001 Rmu_sc0002687.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 2 cut(s) 45, 365
AciI CCGC 3 cut(s) 43, 116, 350
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 3 cut(s) 197, 488, 537
AhdI GACNNNNNGTC 1 cut(s) 522
AluBI AGCT 2 cut(s) 25, 84
AluI AGCT 2 cut(s) 25, 84
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 2 cut(s) 509, 530
Ama87I CYCGRG 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 557
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 1 cut(s) 367
AsuC2I CCSGG 3 cut(s) 111, 112, 235
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 544
BccI CCATC 1 cut(s) 394
BcgI CGANNNNNNTGC 1 cut(s) 30
BcnI CCSGG 3 cut(s) 111, 112, 235
BcoDI GTCTC 2 cut(s) 509, 530
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 474
BisI GCNGC 2 cut(s) 43, 558
BlsI GCNGC 2 cut(s) 44, 559
Bme1390I CCNGG 3 cut(s) 111, 112, 235
BmeRI GACNNNNNGTC 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 3 cut(s) 111, 112, 235
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 396
BpuMI CCSGG 3 cut(s) 111, 112, 235
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 110, 111
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bse1I ACTGG 3 cut(s) 78, 271, 413
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 110, 111
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 135
BseMII CTCAG 3 cut(s) 195, 285, 541
BseNI ACTGG 3 cut(s) 78, 271, 413
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 2 cut(s) 45, 365
BshNI GGYRCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 111, 234
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 509, 530
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 168, 325
Bsp143I GATC 2 cut(s) 136, 562
BspACI CCGC 3 cut(s) 43, 116, 350
BspCNI CTCAG 3 cut(s) 196, 286, 540
BspFNI CGCG 2 cut(s) 45, 365
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 322
BsrI ACTGG 3 cut(s) 78, 271, 413
BssECI CCNNGG 2 cut(s) 110, 111
BssMI GATC 2 cut(s) 136, 562
Bst4CI ACNGT 4 cut(s) 201, 305, 475, 524
BstDEI CTNAG 4 cut(s) 177, 204, 294, 527
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 45, 365
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 2 cut(s) 139, 565
BstMAI GTCTC 2 cut(s) 509, 530
BstMBI GATC 2 cut(s) 136, 562
BstMWI GCNNNNNNNGC 2 cut(s) 58, 566
BstSCI CCNGG 3 cut(s) 109, 110, 233
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 2 cut(s) 45, 365
BstV1I GCAGC 1 cut(s) 544
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 157
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 367
Cfr9I CCCGGG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 25, 77, 84, 209
CviKI_1 RGCY 4 cut(s) 25, 77, 84, 209
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 4 cut(s) 177, 204, 294, 527
DpnI GATC 2 cut(s) 138, 564
DpnII GATC 2 cut(s) 136, 562
DraI TTTAAA 1 cut(s) 589
DriI GACNNNNNGTC 1 cut(s) 522
Eam1105I GACNNNNNGTC 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 101, 162, 225, 231
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 43, 558
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 43, 558
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 366
GluI GCNGC 2 cut(s) 43, 558
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 2 cut(s) 111, 234
HhaI GCGC 1 cut(s) 367
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 7 cut(s) 289, 296, 404, 419, 440, 544, 601
HpaII CCGG 2 cut(s) 111, 234
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 205, 439
Hpy188III TCNNGA 9 cut(s) 91, 140, 224, 293, 338, 395, 464, 529, 537
HpyAV CCTTC 3 cut(s) 88, 534, 591
HpyCH4III ACNGT 4 cut(s) 201, 305, 475, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 566
HpyF3I CTNAG 4 cut(s) 177, 204, 294, 527
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 2 cut(s) 136, 562
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 1 cut(s) 544
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 118, 283
MalI GATC 2 cut(s) 138, 564
MboI GATC 2 cut(s) 136, 562
MboII GAAGA 1 cut(s) 500
MfeI CAATTG 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 168, 325
MluCI AATT 2 cut(s) 169, 253
MlyI GAGTC 2 cut(s) 305, 398
MnlI CCTC 9 cut(s) 27, 117, 199, 252, 312, 321, 363, 381, 490
MseI TTAA 3 cut(s) 86, 447, 588
MspI CCGG 2 cut(s) 111, 234
MspR9I CCNGG 3 cut(s) 111, 112, 235
MunI CAATTG 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 2 cut(s) 45, 365
MwoI GCNNNNNNNGC 2 cut(s) 58, 566
NciI CCSGG 3 cut(s) 111, 112, 235
NdeII GATC 2 cut(s) 136, 562
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 324
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 4 cut(s) 289, 419, 440, 544
PflFI GACNNNGTC 2 cut(s) 131, 146
PkrI GCNGC 2 cut(s) 44, 559
PleI GAGTC 2 cut(s) 304, 398
PpsI GAGTC 2 cut(s) 304, 398
PspN4I GGNNCC 1 cut(s) 324
PsyI GACNNNGTC 2 cut(s) 131, 146
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 86, 447, 588
SatI GCNGC 2 cut(s) 43, 558
Sau3AI GATC 2 cut(s) 136, 562
SchI GAGTC 2 cut(s) 305, 398
ScrFI CCNGG 3 cut(s) 111, 112, 235
SduI GDGCHC 2 cut(s) 168, 325
SetI ASST 9 cut(s) 27, 38, 86, 99, 187, 334, 373, 402, 598
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 474
SmaI CCCGGG 1 cut(s) 112
Sse9I AATT 2 cut(s) 169, 253
SsiI CCGC 3 cut(s) 43, 116, 350
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 109, 110, 233
TaaI ACNGT 4 cut(s) 201, 305, 475, 524
TaqI TCGA 4 cut(s) 135, 417, 422, 463
TasI AATT 2 cut(s) 169, 253
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 4 cut(s) 289, 419, 440, 544
Tru1I TTAA 3 cut(s) 86, 447, 588
Tru9I TTAA 3 cut(s) 86, 447, 588
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 1 cut(s) 263
TspMI CCCGGG 1 cut(s) 110
TspRI CASTG 1 cut(s) 157
Tth111I GACNNNGTC 2 cut(s) 131, 146
XbaI TCTAGA 1 cut(s) 139
XmaI CCCGGG 1 cut(s) 110
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.