Rmu_co8156248.1_g000001

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8156248.1
OG0023048
Physical Location & Seq
Forward (+)
146 .. 553
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8156248.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atggaggagcaacagtctctcttccaccgctaccgccgcgatcgccgcaagcttctggagtttctcttgtcttcttcggcgtcctcctcgtcgctttctcacatcaatttcgatactctcagcgccgattatgtcatcgaccgcgtcaaatccggtggggtggtggatatatctgaagcaaccaagacttacttccatgaatcttcgtatcctccaatggtaaaattgacatgtcgtattctctgttgtcttagctctcttttcatcattttctttgtgaaaggtttaattcaatgtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

100

Amino Acids

11.46

Weight (kDa)

8.41

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023048)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8023858.1_g000001 Rmu_co8156248.1_g000001 Rmu_sc0000530.1_g000001 Rmu_sc0002687.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 39, 144
AciI CCGC 5 cut(s) 28, 34, 37, 46, 142
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 52, 255
AluI AGCT 2 cut(s) 52, 255
Alw26I GTCTC 1 cut(s) 21
AsiSI GCGATCGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 63
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 37, 46
BlsI GCNGC 2 cut(s) 38, 47
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 1 cut(s) 29
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 20, 76
Bsh1236I CGCG 2 cut(s) 39, 144
Bsh1285I CGRYCG 2 cut(s) 43, 142
BsiEI CGRYCG 2 cut(s) 43, 142
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 5 cut(s) 28, 34, 37, 46, 142
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 2 cut(s) 39, 144
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 119, 251
BstFNI CGCG 2 cut(s) 39, 144
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 2 cut(s) 43, 142
BstMWI GCNNNNNNNGC 3 cut(s) 36, 42, 45
BstNSI RCATGY 1 cut(s) 234
BstUI CGCG 2 cut(s) 39, 144
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 125
CseI GACGC 2 cut(s) 69, 133
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 2 cut(s) 197, 231
CviJI RGCY 2 cut(s) 52, 255
CviKI_1 RGCY 2 cut(s) 52, 255
DdeI CTNAG 2 cut(s) 119, 251
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 195
FaeI CATG 2 cut(s) 200, 234
FaiI YATR 4 cut(s) 132, 170, 198, 232
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 2 cut(s) 196, 230
Fnu4HI GCNGC 2 cut(s) 37, 46
Fsp4HI GCNGC 2 cut(s) 37, 46
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 37, 46
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 126
HapII CCGG 1 cut(s) 153
HgaI GACGC 2 cut(s) 69, 133
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 200, 234
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 42, 45
HpyF3I CTNAG 2 cut(s) 119, 251
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 200, 234
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 2 cut(s) 41, 166
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 13, 63, 66, 195
MluCI AATT 3 cut(s) 106, 224, 288
MnlI CCTC 3 cut(s) 94, 97, 222
MseI TTAA 1 cut(s) 287
MspI CCGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 39, 144
MwoI GCNNNNNNNGC 3 cut(s) 36, 42, 45
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 200, 234
NspI RCATGY 1 cut(s) 234
PciI ACATGT 1 cut(s) 230
PfeI GAWTC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 38, 47
Ple19I CGATCG 1 cut(s) 43
PscI ACATGT 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 143
PvuI CGATCG 1 cut(s) 43
RgaI GCGATCGC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 37, 46
Sau3AI GATC 1 cut(s) 40
SetI ASST 3 cut(s) 54, 257, 286
SfaAI GCGATCGC 1 cut(s) 43
SgfI GCGATCGC 1 cut(s) 43
Sse9I AATT 3 cut(s) 106, 224, 288
SsiI CCGC 5 cut(s) 28, 34, 37, 46, 142
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 111, 138
TasI AATT 3 cut(s) 106, 224, 288
TauI GCSGC 2 cut(s) 39, 48
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 213, 253
Tth111I GACNNNGTC 1 cut(s) 143
XceI RCATGY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.