Rmu_sc0000530.1_g000001

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000530.1
OG0023048
Physical Location & Seq
Reverse (-)
2403 .. 3195
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000530.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atggaggagcaacagtctctcttccaccgctaccgccgcgatcgccgcaagcttctggagtttctcttgtcttcttcggcgtcctcctcgtcgctttctcacatcaatttcgatactctcagcgccgattatgtcatcgaccgcgtcaaatccggtggggtggtggatatatctgaagcaaccaagacttacttccatgaatcttcgtatcctccaatggacggcatgccaccagtcattctacaaccgcctcctcctcccacacatgcccataatggtggtccacagcgatttggccagaaaacagaagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

6.18

Isoelectric Point (pI)

74.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023048)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8023858.1_g000001 Rmu_co8156248.1_g000001 Rmu_sc0000530.1_g000001 Rmu_sc0002687.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 39, 144
AciI CCGC 6 cut(s) 28, 34, 37, 46, 142, 248
AcoI YGGCCR 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 21
AoxI GGCC 1 cut(s) 295
AsiSI GCGATCGC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 238
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 37, 46
BlsI GCNGC 2 cut(s) 38, 47
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 4 cut(s) 20, 76, 243, 246
Bsh1236I CGCG 2 cut(s) 39, 144
Bsh1285I CGRYCG 2 cut(s) 43, 142
BshFI GGCC 1 cut(s) 297
BsiEI CGRYCG 2 cut(s) 43, 142
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 6 cut(s) 28, 34, 37, 46, 142, 248
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 2 cut(s) 39, 144
BsrI ACTGG 1 cut(s) 233
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 50, 227
BstDEI CTNAG 1 cut(s) 119
BstFNI CGCG 2 cut(s) 39, 144
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 2 cut(s) 43, 142
BstMWI GCNNNNNNNGC 3 cut(s) 36, 42, 45
BstNSI RCATGY 2 cut(s) 229, 269
BstUI CGCG 2 cut(s) 39, 144
BstV2I GAAGAC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 278
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 50, 227
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 2 cut(s) 69, 133
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 3 cut(s) 197, 226, 266
CviJI RGCY 2 cut(s) 52, 297
CviKI_1 RGCY 2 cut(s) 52, 297
DdeI CTNAG 1 cut(s) 119
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 195
FaeI CATG 3 cut(s) 200, 229, 269
FaiI YATR 6 cut(s) 132, 170, 198, 227, 267, 273
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 3 cut(s) 196, 225, 265
Fnu4HI GCNGC 2 cut(s) 37, 46
Fsp4HI GCNGC 2 cut(s) 37, 46
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 37, 46
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 153
HgaI GACGC 2 cut(s) 69, 133
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 200, 229, 269
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 42, 45
HpyF3I CTNAG 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 200, 229, 269
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 41, 166, 246, 311
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 13, 63, 66, 195
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 6 cut(s) 94, 97, 222, 261, 264, 267
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 39, 144
MwoI GCNNNNNNNGC 3 cut(s) 36, 42, 45
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 200, 229, 269
NspI RCATGY 2 cut(s) 229, 269
PaeI GCATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 38, 47
Ple19I CGATCG 1 cut(s) 43
PspPI GGNCC 1 cut(s) 281
PsyI GACNNNGTC 1 cut(s) 143
PvuI CGATCG 1 cut(s) 43
RgaI GCGATCGC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 2 cut(s) 37, 46
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 281
SetI ASST 1 cut(s) 54
SfaAI GCGATCGC 1 cut(s) 43
SgfI GCGATCGC 1 cut(s) 43
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 276
SphI GCATGC 1 cut(s) 229
Sse9I AATT 1 cut(s) 106
SsiI CCGC 6 cut(s) 28, 34, 37, 46, 142, 248
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 111, 138
TasI AATT 1 cut(s) 106
TauI GCSGC 2 cut(s) 39, 48
TfiI GAWTC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 213
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 281
XceI RCATGY 2 cut(s) 229, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.