Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8033622.1

Orthogroup ID

OG0023152

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 533

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8033622.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

atgtctgggtactcgtttttgaacgaccagctgtctcggcgcacctccattttcgggttacacctctgggtggttcttgggatttgtgtcggagcagccatagttctggttctgttcctcatctccctatggttcacttcacgccggaacagtggttcgtcaaattctaaggccacccagaacccgacaatcccaaatgtctccaaggagatccaagaaatccgaatcgactgctcccggggcaccaacgccccgcccgacccgaagccggcccagcagcaccccgacccggttgcggagtcggatcccctggccagagcccaggcggtgctgctccagccggacgaggagagcccagcgagcaccgcaaggcagaggattcacattgaaattggcaaggaccatcggatttcgtacccggaaaaaggaggtggctcgtcgtcgtacgggagcggcgagactcgttccggcgaccagggggggatcactgggccggaggtgtcgcatttggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

6.51

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023152)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8033622.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032670
rosa_samantha	Rh1AG213400 Rh1CG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	5 cut(s)	254, 296, 326, 366, 453
AclWI	GGATC	4 cut(s)	205, 299, 312, 491
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	3 cut(s)	11, 416, 446
AfiI	CCNNNNNNNGG	6 cut(s)	54, 70, 268, 289, 295, 425
AgsI	TTSAA	2 cut(s)	22, 389
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	3 cut(s)	309, 321, 474
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	3 cut(s)	39, 205, 452
AlwI	GGATC	4 cut(s)	205, 299, 312, 491
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	4 cut(s)	171, 270, 312, 491
ApeKI	GCWGC	3 cut(s)	95, 277, 331
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	271, 400, 491
AsuC2I	CCSGG	4 cut(s)	238, 239, 290, 419
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	322, 356
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	3 cut(s)	107, 289, 318
BccI	CCATC	1 cut(s)	411
BcgI	CGANNNNNNTGC	4 cut(s)	213, 247, 275, 309
BciT130I	CCWGG	3 cut(s)	311, 323, 476
BcnI	CCSGG	4 cut(s)	238, 239, 290, 419
BcoDI	GTCTC	3 cut(s)	39, 205, 452
BisI	GCNGC	4 cut(s)	96, 278, 332, 454
BlsI	GCNGC	4 cut(s)	97, 279, 333, 455
Bme1390I	CCNGG	7 cut(s)	238, 239, 290, 311, 323, 419, 476
Bme18I	GGWCC	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	3 cut(s)	271, 400, 491
BmiI	GGNNCC	2 cut(s)	244, 306
BmrFI	CCNGG	7 cut(s)	238, 239, 290, 311, 323, 419, 476
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	320
BpuMI	CCSGG	4 cut(s)	238, 239, 290, 419
BsaJI	CCNNGG	6 cut(s)	204, 237, 238, 309, 321, 475
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 70, 268, 289, 295, 425
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	3 cut(s)	311, 323, 476
BseDI	CCNNGG	6 cut(s)	204, 237, 238, 309, 321, 475
BseLI	CCNNNNNNNGG	6 cut(s)	54, 70, 268, 289, 295, 425
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	107, 289, 318
BseYI	CCCAGC	2 cut(s)	273, 355
BshFI	GGCC	4 cut(s)	173, 272, 314, 493
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	8 cut(s)	145, 238, 269, 290, 341, 419, 468, 494
BsiWI	CGTACG	1 cut(s)	444
BslI	CCNNNNNNNGG	6 cut(s)	54, 70, 268, 289, 295, 425
BsmAI	GTCTC	3 cut(s)	39, 205, 452
BsnI	GGCC	4 cut(s)	173, 272, 314, 493
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	4 cut(s)	245, 322, 356, 365
Bsp143I	GATC	3 cut(s)	210, 304, 483
BspACI	CCGC	5 cut(s)	254, 296, 326, 366, 453
BspANI	GGCC	4 cut(s)	173, 272, 314, 493
BspLI	GGNNCC	2 cut(s)	244, 306
BspPI	GGATC	4 cut(s)	205, 299, 312, 491
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	6 cut(s)	204, 237, 238, 309, 321, 475
BssMI	GATC	3 cut(s)	210, 304, 483
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	311, 323, 476
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	270, 361
BstDEI	CTNAG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	213, 307, 486
BstMAI	GTCTC	3 cut(s)	39, 205, 452
BstMBI	GATC	3 cut(s)	210, 304, 483
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 240, 274, 337, 360, 365
BstNI	CCWGG	3 cut(s)	311, 323, 476
BstSCI	CCNGG	7 cut(s)	236, 237, 288, 309, 321, 417, 474
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	107, 289, 318
BstX2I	RGATCY	2 cut(s)	210, 304
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	2 cut(s)	210, 304
BsuRI	GGCC	4 cut(s)	173, 272, 314, 493
BtsIMutI	CAGTG	2 cut(s)	157, 486
Cac8I	GCNNGC	2 cut(s)	270, 361
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	271, 400, 491
Cfr9I	CCCGGG	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	10, 415, 445
CviQI	GTAC	3 cut(s)	10, 415, 445
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	212, 306, 485
DpnII	GATC	3 cut(s)	210, 304, 483
DriI	GACNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	322, 356
Eco47I	GGWCC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	237
EcoRII	CCWGG	3 cut(s)	309, 321, 474
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	322, 356
ErhI	CCWWGG	1 cut(s)	204
FaiI	YATR	2 cut(s)	101, 130
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	96, 278, 332, 454
FriOI	GRGCYC	2 cut(s)	322, 356
Fsp4HI	GCNGC	4 cut(s)	96, 278, 332, 454
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	4 cut(s)	96, 278, 332, 454
GsaI	CCCAGC	2 cut(s)	277, 359
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	4 cut(s)	173, 272, 314, 493
HapII	CCGG	8 cut(s)	145, 238, 269, 290, 341, 419, 468, 494
HhaI	GCGC	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	225, 299, 379, 460
HpaII	CCGG	8 cut(s)	145, 238, 269, 290, 341, 419, 468, 494
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	4 cut(s)	92, 224, 304, 408
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	2 cut(s)	442, 445
HpyCH4III	ACNGT	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 240, 274, 337, 360, 365
HpyF3I	CTNAG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	210, 304, 483
LmnI	GCTCC	4 cut(s)	92, 239, 339, 450
Lsp1109I	GCAGC	3 cut(s)	107, 289, 318
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	3 cut(s)	212, 306, 485
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	3 cut(s)	210, 304, 483
MflI	RGATCY	2 cut(s)	210, 304
MhlI	GDGCHC	4 cut(s)	245, 322, 356, 365
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	163, 390
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	308, 454
MmeI	TCCRAC	2 cut(s)	70, 282
MnlI	CCTC	7 cut(s)	55, 74, 128, 340, 369, 422, 490
Mox20I	TGGCCA	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	8 cut(s)	145, 238, 269, 290, 341, 419, 468, 494
MspR9I	CCNGG	7 cut(s)	238, 239, 290, 311, 323, 419, 476
MvaI	CCWGG	3 cut(s)	311, 323, 476
MwoI	GCNNNNNNNGC	6 cut(s)	37, 240, 274, 337, 360, 365
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	4 cut(s)	238, 239, 290, 419
NdeII	GATC	3 cut(s)	210, 304, 483
NgoMIV	GCCGGC	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	244, 306
NmeAIII	GCCGAG	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 453
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	225, 379
Pfl23II	CGTACG	1 cut(s)	444
PkrI	GCNGC	4 cut(s)	97, 279, 333, 455
PleI	GAGTC	2 cut(s)	307, 454
PpsI	GAGTC	2 cut(s)	307, 454
Psp6I	CCWGG	3 cut(s)	309, 321, 474
PspFI	CCCAGC	2 cut(s)	273, 355
PspGI	CCWGG	3 cut(s)	309, 321, 474
PspLI	CGTACG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	244, 306
PspPI	GGNCC	3 cut(s)	271, 400, 491
PsuI	RGATCY	2 cut(s)	210, 304
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	11, 416, 446
RsaNI	GTAC	3 cut(s)	10, 415, 445
SatI	GCNGC	4 cut(s)	96, 278, 332, 454
Sau3AI	GATC	3 cut(s)	210, 304, 483
Sau96I	GGNCC	3 cut(s)	271, 400, 491
SchI	GAGTC	2 cut(s)	308, 454
ScrFI	CCNGG	7 cut(s)	238, 239, 290, 311, 323, 419, 476
SduI	GDGCHC	4 cut(s)	245, 322, 356, 365
SetI	ASST	5 cut(s)	33, 47, 66, 433, 501
SinI	GGWCC	1 cut(s)	400
SmaI	CCCGGG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	163, 390
SsiI	CCGC	5 cut(s)	254, 296, 326, 366, 453
StyD4I	CCNGG	7 cut(s)	236, 237, 288, 309, 321, 417, 474
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	163, 390
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	225, 379
TscAI	CASTG	2 cut(s)	157, 493
TseI	GCWGC	3 cut(s)	95, 277, 331
TspMI	CCCGGG	1 cut(s)	237
TspRI	CASTG	2 cut(s)	157, 493
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	163
XmaI	CCCGGG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.