Rroxscaffold_1G00032670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0023152
Physical Location & Seq
Forward (+)
46912131 .. 46912436
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032670.1

Sequence Viewer

Length: 306 bp
ATGTCTCCAAGGAGTCAAGAAATTCGTATCGACGGCGCAAGGAGCACCAACAACCCGCTCGACCCGAAGCCGGCGCAGCACCCTGACCCGGTAGTGGAACCAATAGTCCTCTTCGAGTGTAGTCAGTGTACCATCATGCATGTAGACCTCATACCTCAATGGCAGCCACCGTCTATCGAACCGTATCGAAAATTCGAAACAGACGGTAAACCAAGAGTTTTCGAGCCGGACGTGGAGATACCAGAGGGTACGCATTCGCCGCCGCAATTTGTGCCTCCGCCGAAGACCCTTCTTTCAAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.37

Weight (kDa)

5.25

Isoelectric Point (pI)

72.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023152)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8033622.1_g000001
rosa_roxburghii Rroxscaffold_1G00032670
rosa_samantha Rh1AG213400 Rh1CG197700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 144
AciI CCGC 4 cut(s) 56, 260, 263, 278
AcsI RAATTY 2 cut(s) 21, 191
AfaI GTAC 2 cut(s) 130, 250
AfiI CCNNNNNNNGG 3 cut(s) 70, 88, 94
AgsI TTSAA 1 cut(s) 297
AjiI CACGTC 1 cut(s) 232
AloI GAACNNNNNNTCC 2 cut(s) 90, 122
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 76, 163
ApoI RAATTY 2 cut(s) 21, 191
AspLEI GCGC 2 cut(s) 38, 76
AsuC2I CCSGG 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 88, 175
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 49
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 4 cut(s) 77, 164, 260, 263
BlsI GCNGC 4 cut(s) 78, 165, 261, 264
Bme1390I CCNGG 1 cut(s) 89
BmgBI CACGTC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 88, 94
Bse118I RCCGGY 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 70, 88, 94
BseXI GCAGC 2 cut(s) 88, 175
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 3 cut(s) 71, 89, 227
BslI CCNNNNNNNGG 3 cut(s) 70, 88, 94
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 47
BspACI CCGC 4 cut(s) 56, 260, 263, 278
BspLI GGNNCC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 171, 183, 206
Bst6I CTCTTC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 72
BstHHI GCGC 2 cut(s) 38, 76
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 42, 76, 259, 271
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 88, 175
BstV2I GAAGAC 1 cut(s) 290
BtrI CACGTC 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 2 cut(s) 38, 76
Cfr10I RCCGGY 1 cut(s) 70
Csp6I GTAC 2 cut(s) 129, 249
CviAII CATG 2 cut(s) 136, 140
CviJI RGCY 4 cut(s) 70, 166, 226, 302
CviKI_1 RGCY 4 cut(s) 70, 166, 226, 302
CviQI GTAC 2 cut(s) 129, 249
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 139, 143
FaiI YATR 3 cut(s) 137, 141, 152
FatI CATG 2 cut(s) 135, 139
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 77, 164, 260, 263
Fsp4HI GCNGC 4 cut(s) 77, 164, 260, 263
GlaI GCGC 2 cut(s) 37, 75
GluI GCNGC 4 cut(s) 77, 164, 260, 263
HapII CCGG 3 cut(s) 71, 89, 227
HhaI GCGC 2 cut(s) 38, 76
Hin1II CATG 2 cut(s) 139, 143
Hin6I GCGC 2 cut(s) 36, 74
HinP1I GCGC 2 cut(s) 36, 74
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 1 cut(s) 13
HpaII CCGG 3 cut(s) 71, 89, 227
Hpy166II GTNNAC 3 cut(s) 129, 145, 209
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 3 cut(s) 129, 145, 209
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 3 cut(s) 171, 183, 206
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 76, 259, 271
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 139, 143
HspAI GCGC 2 cut(s) 36, 74
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 84, 96, 102, 240, 255
Lsp1109I GCAGC 2 cut(s) 88, 175
MaeII ACGT 1 cut(s) 231
MbiI CCGCTC 1 cut(s) 58
MboII GAAGA 2 cut(s) 103, 295
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 3 cut(s) 21, 191, 266
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 5 cut(s) 119, 158, 165, 238, 285
Mph1103I ATGCAT 1 cut(s) 141
MroNI GCCGGC 1 cut(s) 70
MspI CCGG 3 cut(s) 71, 89, 227
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 42, 76, 259, 271
NaeI GCCGGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 89
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 2 cut(s) 139, 143
NlaIV GGNNCC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 141
NspI RCATGY 1 cut(s) 143
NspV TTCGAA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 78, 165, 261, 264
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 99
RsaI GTAC 2 cut(s) 130, 250
RsaNI GTAC 2 cut(s) 129, 249
SatI GCNGC 4 cut(s) 77, 164, 260, 263
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 47
SetI ASST 4 cut(s) 150, 157, 234, 304
SfuI TTCGAA 1 cut(s) 195
Sse9I AATT 3 cut(s) 21, 191, 266
SsiI CCGC 4 cut(s) 56, 260, 263, 278
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 3 cut(s) 171, 183, 206
TaiI ACGT 1 cut(s) 234
TaqI TCGA 7 cut(s) 30, 60, 114, 177, 187, 195, 222
TasI AATT 3 cut(s) 21, 191, 266
TauI GCSGC 2 cut(s) 262, 265
TscAI CASTG 1 cut(s) 131
TseI GCWGC 2 cut(s) 76, 163
TspRI CASTG 1 cut(s) 131
XapI RAATTY 2 cut(s) 21, 191
XceI RCATGY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.