Rh1CG197700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0023152
Physical Location & Seq
Forward (+)
43175407 .. 43176807
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG197700.1

Sequence Viewer

Length: 369 bp
ATGGTTGGGGAAATTGTGGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATCAAGAAAACCGCAGCTCTCAACAGCGGCCGGAAAGTACCCGGAATTCATCCTCAGACAATGTTACAAGTTTTTGGTTTGGAAGTACTTTTTAGAGCAGTAAAAAAAGGTTTTGAATACGAAGAGTCTGCTATCCCCGGAGGTGGTGCTCACCATTTGACAGTTTACAGCGTAAGGAGCACCAACAACCCGCTCGACCCGAAGCCGGCGCAACACCCCGACACGGTAACGGTAACGACTATAATGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.18

Weight (kDa)

6.91

Isoelectric Point (pI)

21.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023152)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8033622.1_g000001
rosa_roxburghii Rroxscaffold_1G00032670
rosa_samantha Rh1AG213400 Rh1CG197700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 4 cut(s) 37, 129, 144, 308
AcoI YGGCCR 2 cut(s) 77, 145
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 2 cut(s) 156, 204
AfiI CCNNNNNNNGG 3 cut(s) 260, 322, 340
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 2 cut(s) 268, 299
AoxI GGCC 2 cut(s) 77, 145
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 2 cut(s) 159, 255
AsuHPI GGTGA 1 cut(s) 260
Bbv12I GWGCWC 2 cut(s) 268, 299
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BcnI CCSGG 2 cut(s) 159, 255
BisI GCNGC 2 cut(s) 132, 145
BlsI GCNGC 2 cut(s) 133, 146
BmcAI AGTACT 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 159, 255
BmrFI CCNGG 2 cut(s) 159, 255
BpuMI CCSGG 2 cut(s) 159, 255
BsaJI CCNNGG 1 cut(s) 253
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 322, 340
Bse118I RCCGGY 2 cut(s) 95, 322
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 260, 322, 340
BseMII CTCAG 2 cut(s) 121, 185
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 79, 147
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 268, 299
BsiSI CCGG 6 cut(s) 66, 96, 148, 159, 255, 323
BslI CCNNNNNNNGG 3 cut(s) 260, 322, 340
BsnI GGCC 2 cut(s) 79, 147
Bsp1286I GDGCHC 2 cut(s) 268, 299
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 4 cut(s) 37, 129, 144, 308
BspANI GGCC 2 cut(s) 79, 147
BspCNI CTCAG 2 cut(s) 120, 184
BsrBI CCGCTC 1 cut(s) 310
BsrFI RCCGGY 2 cut(s) 95, 322
BssAI RCCGGY 2 cut(s) 95, 322
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 4 cut(s) 91, 280, 343, 349
Bst6I CTCTTC 2 cut(s) 64, 234
BstC8I GCNNGC 2 cut(s) 97, 324
BstDEI CTNAG 2 cut(s) 107, 171
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 157, 253
BstV1I GCAGC 1 cut(s) 143
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 2 cut(s) 79, 147
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 97, 324
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 2 cut(s) 95, 322
Csp6I GTAC 2 cut(s) 155, 203
CviJI RGCY 4 cut(s) 79, 134, 147, 322
CviKI_1 RGCY 4 cut(s) 79, 134, 147, 322
CviQI GTAC 2 cut(s) 155, 203
DdeI CTNAG 2 cut(s) 107, 171
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 77, 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 64, 234
EarI CTCTTC 2 cut(s) 64, 234
EclXI CGGCCG 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 162
FaiI YATR 1 cut(s) 359
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 132, 145
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 132, 145
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 132, 145
HaeIII GGCC 2 cut(s) 79, 147
HapII CCGG 6 cut(s) 66, 96, 148, 159, 255, 323
HhaI GCGC 1 cut(s) 328
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 2 cut(s) 23, 242
HpaII CCGG 6 cut(s) 66, 96, 148, 159, 255, 323
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 4 cut(s) 91, 280, 343, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 2 cut(s) 107, 171
HspAI GCGC 1 cut(s) 326
KroI GCCGGC 2 cut(s) 95, 322
KroNI GCCGGC 2 cut(s) 97, 324
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 6 cut(s) 79, 109, 161, 172, 268, 336
Lsp1109I GCAGC 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 180, 343, 349
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 310
MboI GATC 1 cut(s) 81
MboII GAAGA 3 cut(s) 22, 81, 251
MhlI GDGCHC 2 cut(s) 268, 299
MluCI AATT 2 cut(s) 12, 162
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 2 cut(s) 180, 251
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 95, 322
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 6 cut(s) 66, 96, 148, 159, 255, 323
MspR9I CCNGG 2 cut(s) 159, 255
MwoI GCNNNNNNNGC 1 cut(s) 294
NaeI GCCGGC 2 cut(s) 97, 324
NciI CCSGG 2 cut(s) 159, 255
NdeII GATC 1 cut(s) 81
NgoMIV GCCGGC 2 cut(s) 95, 322
PdiI GCCGGC 2 cut(s) 97, 324
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 133, 146
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
RsaI GTAC 2 cut(s) 156, 204
RsaNI GTAC 2 cut(s) 155, 203
SatI GCNGC 2 cut(s) 132, 145
Sau3AI GATC 1 cut(s) 81
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 159, 255
SduI GDGCHC 2 cut(s) 268, 299
SetI ASST 3 cut(s) 136, 229, 262
SgrAI CRCCGGYG 1 cut(s) 95
Sse9I AATT 2 cut(s) 12, 162
SsiI CCGC 4 cut(s) 37, 129, 144, 308
StyD4I CCNGG 2 cut(s) 157, 253
TaaI ACNGT 4 cut(s) 91, 280, 343, 349
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 12, 162
TatI WGTACW 1 cut(s) 202
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 23
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 65
XapI RAATTY 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.