Rh1AG213400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0023152
Physical Location & Seq
Forward (+)
40764897 .. 40765678
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG213400.1

Sequence Viewer

Length: 252 bp
ATGGTTGGGGAAATTGTGGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATCAAGAAAACCGCAGCTCTCAACAGCGGCCGGAAAGTACCCGGAATTCATCCTCAGACAATGTTACAATACGTACTGCAATTGAATGAAAACATAACTCAGGGGAAACAACAGAAGGTCGGTGAGATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.07

Weight (kDa)

9.52

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023152)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8033622.1_g000001
rosa_roxburghii Rroxscaffold_1G00032670
rosa_samantha Rh1AG213400 Rh1CG197700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 37, 129, 144
AcoI YGGCCR 2 cut(s) 77, 145
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 2 cut(s) 156, 192
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 2 cut(s) 77, 145
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 251
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 159
BisI GCNGC 2 cut(s) 132, 145
BlsI GCNGC 2 cut(s) 133, 146
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 95
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 121, 185, 230
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 79, 147
BsiEI CGRYCG 1 cut(s) 148
BsiSI CCGG 4 cut(s) 66, 96, 148, 159
BsnI GGCC 2 cut(s) 79, 147
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 3 cut(s) 37, 129, 144
BspANI GGCC 2 cut(s) 79, 147
BspCNI CTCAG 3 cut(s) 120, 184, 229
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 107, 171, 216
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 157
BstSNI TACGTA 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 143
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 2 cut(s) 79, 147
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 95
Csp6I GTAC 2 cut(s) 155, 191
CviJI RGCY 3 cut(s) 79, 134, 147
CviKI_1 RGCY 3 cut(s) 79, 134, 147
CviQI GTAC 2 cut(s) 155, 191
DdeI CTNAG 3 cut(s) 107, 171, 216
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 77, 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 145
Eco105I TACGTA 1 cut(s) 190
Eco52I CGGCCG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 162
FaiI YATR 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 132, 145
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 132, 145
GluI GCNGC 2 cut(s) 132, 145
HaeIII GGCC 2 cut(s) 79, 147
HapII CCGG 4 cut(s) 66, 96, 148, 159
HinfI GANTC 1 cut(s) 23
HpaII CCGG 4 cut(s) 66, 96, 148, 159
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 107, 171, 216
HpySE526I ACGT 1 cut(s) 189
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 79, 109, 161, 172, 203
Lsp1109I GCAGC 1 cut(s) 143
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 2 cut(s) 22, 81
MfeI CAATTG 1 cut(s) 197
MluCI AATT 3 cut(s) 12, 162, 197
MnlI CCTC 1 cut(s) 180
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 4 cut(s) 66, 96, 148, 159
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 159
NdeII GATC 1 cut(s) 81
NgoMIV GCCGGC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 133, 146
Ppu21I YACGTR 1 cut(s) 190
RsaI GTAC 2 cut(s) 156, 192
RsaNI GTAC 2 cut(s) 155, 191
SatI GCNGC 2 cut(s) 132, 145
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 159
SetI ASST 3 cut(s) 136, 192, 237
SgeI CNNG 8 cut(s) 46, 78, 108, 133, 160, 170, 171, 230
SgrAI CRCCGGYG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 190
Sse9I AATT 3 cut(s) 12, 162, 197
SsiI CCGC 3 cut(s) 37, 129, 144
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 192
TasI AATT 3 cut(s) 12, 162, 197
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 1 cut(s) 23
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 155, 219
TspGWI ACGGA 1 cut(s) 65
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.