Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8060778.1

Orthogroup ID

OG0023087

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 568

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8060778.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 568 bp

ccctcaccccctcccccctccgccggccttcgccccccacctcccccctcccctcgtcgccccgcctttccacgccggccctcctcctccggccgccggccctccctccgacccggagctccacaaacggatcgacaagctcgtcgagtactccgccaagaacggccccgacttcgaagccatgattcgcgagaagcagcaggataatcccgactacgctttcctcttcggcggcgaaggccacggctattaccgttacaagctctacacctccactcgggtcgggtcgttcaacccgaatcctcaattcgctccccacatgcttcgtcctccgccgaatccaatgatgaatgggccgccgaacccgatgatgggcggcccgcagtcgtatttctacgaccagcagcggcataatcagcagcctttcggagtttatgggaggtccgattatgaccaggcggcggcgcaaccctttaaagggctttcggggccgctgcctcctgatgttgcaatggagctgagcaatgtgcttatgacgctgaatgggaccaaagagtcgattaaagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0007204 GO:0008150 GO:0008285 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016528 GO:0016529 GO:0019725 GO:0023051 GO:0023056 GO:0030001 GO:0030003 GO:0031090 GO:0031984 GO:0032879 GO:0033017 GO:0034220 GO:0042127 GO:0042175 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050848 GO:0050850 GO:0051179 GO:0051209 GO:0051234 GO:0051282 GO:0051283 GO:0051480 GO:0051641 GO:0051649 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060401 GO:0060402 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0070884 GO:0070886 GO:0072503 GO:0072507 GO:0072511 GO:0097553 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098827 GO:0106056 GO:0106058 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CTD_bind Surp

Protein Analysis

189

Amino Acids

20.76

Weight (kDa)

6.77

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023087)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8060778.1_g000001 Rmu_sc0002541.1_g000032
rosa_rugosa	Rorug04G0446400
rosa_wichuraiana	Rw7G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	141, 554
AccII	CGCG	1 cut(s)	190
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	91
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	8 cut(s)	23, 96, 277, 371, 372, 461, 477, 478
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	4 cut(s)	119, 140, 263, 518
AluI	AGCT	4 cut(s)	119, 140, 263, 518
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	9 cut(s)	25, 77, 91, 98, 164, 239, 354, 377, 489
ApeKI	GCWGC	4 cut(s)	197, 404, 419, 494
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	8 cut(s)	78, 99, 165, 354, 378, 442, 489, 547
AsuC2I	CCSGG	1 cut(s)	114
AsuII	TTCGAA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	442, 547
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	209, 416, 431, 481
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	2 cut(s)	179, 260
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	114, 456
Bme18I	GGWCC	2 cut(s)	442, 547
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	8 cut(s)	78, 99, 165, 354, 378, 442, 489, 547
BmiI	GGNNCC	3 cut(s)	167, 490, 548
BmrFI	CCNGG	2 cut(s)	114, 456
Bpu1102I	GCTNAGC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	8 cut(s)	23, 96, 277, 371, 372, 461, 477, 478
Bse118I	RCCGGY	3 cut(s)	23, 75, 96
Bse3DI	GCAATG	2 cut(s)	517, 530
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	8 cut(s)	23, 96, 277, 371, 372, 461, 477, 478
BseMI	GCAATG	2 cut(s)	517, 530
BseMII	CTCAG	1 cut(s)	510
BseRI	GAGGAG	2 cut(s)	73, 76
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	4 cut(s)	209, 416, 431, 481
Bsh1236I	CGCG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	9 cut(s)	27, 79, 93, 100, 166, 241, 356, 379, 491
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	5 cut(s)	24, 76, 90, 97, 114
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	8 cut(s)	23, 96, 277, 371, 372, 461, 477, 478
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	9 cut(s)	27, 79, 93, 100, 166, 241, 356, 379, 491
BsoBI	CYCGRG	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	130
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp68I	TCGCGA	1 cut(s)	190
BspANI	GGCC	9 cut(s)	27, 79, 93, 100, 166, 241, 356, 379, 491
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	167, 490, 548
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	517, 530
BsrFI	RCCGGY	3 cut(s)	23, 75, 96
BssAI	RCCGGY	3 cut(s)	23, 75, 96
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	25, 77, 98, 381
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 416, 488, 536
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	112, 454
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	209, 416, 431, 481
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	9 cut(s)	27, 79, 93, 100, 166, 241, 356, 379, 491
BtgI	CCRYGG	1 cut(s)	242
BtuMI	TCGCGA	1 cut(s)	190
Cac8I	GCNNGC	4 cut(s)	25, 77, 98, 381
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	3 cut(s)	23, 75, 96
Cfr13I	GGNCC	8 cut(s)	78, 99, 165, 354, 378, 442, 489, 547
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	182, 320
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	476
DrdI	GACNNNNNNGTC	2 cut(s)	141, 554
DseDI	GACNNNNNNGTC	2 cut(s)	141, 554
EaeI	YGGCCR	1 cut(s)	91
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	3 cut(s)	10, 143, 322
Ecl136II	GAGCTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	442, 547
Eco52I	CGGCCG	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	2 cut(s)	185, 323
FaiI	YATR	6 cut(s)	183, 321, 412, 436, 451, 534
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	2 cut(s)	181, 319
FauI	CCCGC	2 cut(s)	70, 388
FriOI	GRGCYC	1 cut(s)	121
GlaI	GCGC	1 cut(s)	466
HaeIII	GGCC	9 cut(s)	27, 79, 93, 100, 166, 241, 356, 379, 491
HapII	CCGG	5 cut(s)	24, 76, 90, 97, 114
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	185, 323
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HinfI	GANTC	4 cut(s)	185, 299, 338, 555
HpaII	CCGG	5 cut(s)	24, 76, 90, 97, 114
Hpy188I	TCNGA	3 cut(s)	110, 429, 446
Hpy188III	TCNNGA	3 cut(s)	189, 210, 501
Hpy99I	CGWCG	2 cut(s)	60, 147
HpyAV	CCTTC	2 cut(s)	38, 231
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 416, 488, 536
HpyF3I	CTNAG	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	185, 323
HspAI	GCGC	1 cut(s)	465
KroI	GCCGGC	3 cut(s)	23, 75, 96
KroNI	GCCGGC	3 cut(s)	25, 77, 98
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	4 cut(s)	116, 124, 317, 515
Lsp1109I	GCAGC	4 cut(s)	209, 416, 431, 481
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	133
MroNI	GCCGGC	3 cut(s)	23, 75, 96
MseI	TTAA	2 cut(s)	475, 562
MspA1I	CMGCKG	2 cut(s)	407, 494
MspI	CCGG	5 cut(s)	24, 76, 90, 97, 114
MspR9I	CCNGG	2 cut(s)	114, 456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	238, 416, 488, 536
NaeI	GCCGGC	3 cut(s)	25, 77, 98
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	130
NgoMIV	GCCGGC	3 cut(s)	23, 75, 96
NlaIII	CATG	2 cut(s)	185, 323
NlaIV	GGNNCC	3 cut(s)	167, 490, 548
NruI	TCGCGA	1 cut(s)	190
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	139, 294
PdiI	GCCGGC	3 cut(s)	25, 77, 98
PfeI	GAWTC	3 cut(s)	185, 299, 338
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	167, 490, 548
PspPI	GGNCC	8 cut(s)	78, 99, 165, 354, 378, 442, 489, 547
RruI	TCGCGA	1 cut(s)	190
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	475, 562
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	8 cut(s)	78, 99, 165, 354, 378, 442, 489, 547
ScaI	AGTACT	1 cut(s)	150
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	2 cut(s)	114, 456
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	7 cut(s)	43, 121, 142, 265, 273, 444, 520
SfuI	TTCGAA	1 cut(s)	175
SinI	GGWCC	2 cut(s)	442, 547
Sse9I	AATT	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	112, 454
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	4 cut(s)	133, 145, 175, 558
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	8 cut(s)	96, 235, 359, 379, 410, 462, 465, 494
TfiI	GAWTC	3 cut(s)	185, 299, 338
Tru1I	TTAA	2 cut(s)	475, 562
Tru9I	TTAA	2 cut(s)	475, 562
TseI	GCWGC	4 cut(s)	197, 404, 419, 494
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	442, 547
XceI	RCATGY	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.