Rorug04G0446400

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
60212925 .. 60224782
11858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0446400.1

Sequence Viewer

Length: 3132 bp
ATGGTGACTCCGCTGCCTCCAGGGCCACCTAGACCTGGTAATCATCCACCAAACCCTAATGTTAACCCCAATCCCCAATCTTTACCTGATAATATGCAAAATTTGAATCTCAATCGGCCGCCACCGCCTTCAATGCCCCATCCTAGACCTTCATCGACGCCGTATCCGGCGCCATTTTCTAGGCCTGGCCCTCCTCCTCCGGCGCCGGTGCGGCCTTCTGGACCCCCACCGCCTTCATTTCCTCCGGGAAGGCCTTCTGGCCCGCCTGTTAGTCAAAGTCAACCTTCTCCACTTGGCTACAGACCACCTCCTCCTACCGGTACTTTCCCACCGAACCGTCAAATGGCACCACCTCCGCCACCGCCTGGTGCCCGACCGGGCGGGATGGGGCCTCCTCCTCCAGTCATGCCTTCACCAGGTGCTGTGATGAATAATGGGCCGCCGAATTTTGCACCAGGAGGTTTGCAGGCTGGGCCACGTTTTCCTCCTCCAGCTGGGATTGCATCACAACTGACGCCGACGCCTCTACTCGGACCTCCAACAGCAATGGCAGGAGCTTGGGCGCCACCGCAGCCTCAAACCATGCATGCTTTTTTGGGCAGTGCTAGTCCTCCAGTGCAACAGCAGCGATCTCCATTTGCAGGGGCAGCCCAACCTCCTTCAGTTCCTCCTTATGGATCACAACCTTGGTCCATGCAACCCAACCAAGTGCCTCCACCTCCACCAATTTCCCAATCTCCGCAAGCACCTAGAATGTTTGGAATGCCACCACCCATGCCAAATCAGTCTATGACTGCCATATCACATGCTGTGGGTCAAACTGGAGCCCCAGTGGCAGGTCCATCTAAGATTGATCCTAGTCAAATTCCGCGACCCGTTCCAGATTCCTCCGTTGTTCTGCATGAAACTCGCCAAGGCAATCAGGCCAACCCTCCTCCGCCTGCTACAAGCGATTACATTGTCAGAGACACTGGAAACTGCAGCCCACGTAATATGAGGTGCACTATCAATCAGATCCCATGCACTGCTGACCTCTTGACGACATCAGGGATGCAGTTGGCTTTGCTGGTCCAACCCTTGGCCCTTCCTCATCCTTCTGAAGAGCCCATACAAGTCGTGGATTTAGGTGAAAGTGGTCCTGTTCGTTGTTCTCGTTGCAAAGGCTATATAAATCCTTTCATGAAGTTCATTGATCAGGGAAGGCAGTTCATCTGCAACTTGTGTGGATTTACTGATGAGACTCCCCGTGACTACCACTGCAACCTTGGTCCAGATGGTAGGCGTAGAGATGCTGATGATAGACCCGAGCTTTGTAGAGGAATGGTGGAGATTGTTGCTCCAAAAGAATACACGGTGCGTGATCCAATGCTGGCTATGTATTTCTTCCTTATTGACGTATCCATGAATGCCATACAAACTGGAGCAACTGCAGCTGCATGCACTGCAATCAGTCAAGTTATTTCCGATCTTCCTGAAAGTCCTCGGACAAAGGTGGGAATTGCAACATTTGACTGTACTATTCATTTTTATAATTTGAAACGTGCTTTACAGCAGCCATTGATGCTCATTGTTCCTGATATACAAGATGTTTATACTCCTCTGGAGACTGATGTGATTGTTCAGCTTTCTGAGTGCCGTCAGCATTTAGAGCTACTGCTTGAAAGCATCCCATCCATGTTTGAAAATAACAAAACAGCTGACTCAGCCTTTGGTGCTGCAGTCAAGGCTGCATTCTTGGCAATGAAAAGTAATGGAGGAAAACTTTTGGTATTTCAGTCAGTATTGCCATCTGTTGGGACTGGAGCCCTTTCCGCTAGAGAGGCTGAAGGAAGAACGAATACTTCTGCTGGTGAGAAGGAGGCCCATAAATTACTTCAACCAGCCGATAAGACTTTAGAATCAATGGCAATGGAAGTTGCTGAGTATCAGGTTTGTGTAGATATTTTTATTACCACCCAGACTTACATGGACATAGCTTCTATCTCTGTCATCCCAAGAACTACTGGTGGACAGATCTATTATTATTACCCTTTCTCTGCTGTTACTGACACTGCAAAGATCTACAATGATCTTAAATGGAATATTACAAGGCCTCAAGGTTTTGAGGCAGTGATGCGTGTGCGATGCAGCCAGGGTCTCCAAGTTAACGAGTACCGCGGGAACTTCTGCAAGCGCATTCCTACAGATGTTGACCTACCTGGGATTGACTCTGACAAAACTATAATGGTAACCATAAAACATGATGACAAATTGCAGGACGGCTCAGAATGTGTGTTTCAGTGTGCGCTTCTGTACACTACTGTGTATGGCCAAAGAAGGATTCGAGTTTTAACACTAGCCCTACCATGCACAAGTATGCTGAATAATCTTTTCCGCACAGCTGATTTGGATACTCAGTTTGCTTGTATCTTGAAGCAAGGGGCTAATGAAATCCCTTCTAGCCCACTCCTGCAAGTCCGTGAACGATTGACTGACCGTTGCATCAGCATTCTCTGTTCTTATCGTAAATTTTGTGCTACAGTAACATCAAGTGGACAACTTATTCTTCCAGAAACACTGAAGCTTCTACCTCTATACATCCTTGCTTTAACGAAAAGTACAGGATTGCGATCTTCTGGGAAAATAGATGAACGATCTTTTTGGATCAACTATGTGTCCTCTGTTTCCAGTGCTTTAGCAGTAGCACTTGTTTATCCACGGATGCTGGCAATCCACAACCTTAATTGTAAGGATGACGCATCTCTTTGCCCTCCTGCAATTCCACTTTCTAGTGAGCATATCAGTGATGAGGGAATTTATCTTCTCGAAAATGGAGAGAATTGTCTAATTTATGTAGGGAGCTCAGTTGATCCAGATATCTTGAACAAGCTGTTTGGAATTCCCTCAGTTGATGAAATTCCTACTCAGTTTGTCCTGCAGCAGTATGACAATCCATTCTCAAAGAAACTAAATGATTTGATAAATGAGATACGACGCCAAAGATGTTCCTACCTCCGCTTGAAGTTATGCAAGAAAGGAGATCCATCAGGGATGCTTTTCTTCTCTTATATCGTAGAAGACAAGAGCTCGATTGGCCTCTCATATGTTGAGTTCCTAATACATATCCATCGGCAAATTCAAATGAAAATGTGA

Protein Analysis

1043

Amino Acids

113.49

Weight (kDa)

7.87

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 380 - 418 2.5e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 455 - 695 1.5e-77 Sec23/Sec24 trunk domain
Sec23_BS PF08033 700 - 784 1.4e-26 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 795 - 891 1.2e-24 Sec23/Sec24 helical domain
Gelsolin PF00626 917 - 985 1.9e-07 Gelsolin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1530
Acc36I ACCTGC 1 cut(s) 827
AccB1I GGYRCC 5 cut(s) 169, 202, 346, 368, 562
AccB7I CCANNNNNTGG 3 cut(s) 365, 1078, 1793
AccII CGCG 2 cut(s) 871, 2157
AclWI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 3014
AcoI YGGCCR 2 cut(s) 116, 2308
AcsI RAATTY 8 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895, 3114
AcuI CTGAAG 4 cut(s) 645, 1119, 1845, 2579
AcyI GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
AdeI CACNNNGTG 1 cut(s) 419
AfaI GTAC 5 cut(s) 322, 1516, 2153, 2294, 2599
AgeI ACCGGT 1 cut(s) 317
AjnI CCWGG 8 cut(s) 19, 34, 184, 364, 415, 454, 2130, 2197
AjuI GAANNNNNNNTTGG 2 cut(s) 2304, 2336
AleI CACNNNNGTG 1 cut(s) 2300
Alw21I GWGCWC 3 cut(s) 1004, 2843, 3068
Alw26I GTCTC 4 cut(s) 960, 1232, 1598, 2141
Alw44I GTGCAC 1 cut(s) 1000
AlwI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 3014
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 1304
ApaLI GTGCAC 1 cut(s) 1000
ApoI RAATTY 8 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895, 3114
ArsI GACNNNNNNTTYG 4 cut(s) 1293, 1325, 1691, 1723
AsiGI ACCGGT 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
AsuC2I CCSGG 2 cut(s) 246, 378
AsuHPI GGTGA 4 cut(s) 16, 405, 1139, 1862
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 7 cut(s) 221, 533, 690, 839, 1069, 1136, 1268
BaeGI GKGCMC 2 cut(s) 373, 1004
BalI TGGCCA 1 cut(s) 2310
BanI GGYRCC 5 cut(s) 169, 202, 346, 368, 562
BanII GRGCYC 5 cut(s) 829, 1107, 1807, 2843, 3068
BarI GAAGNNNNNNTAC 4 cut(s) 1092, 1124, 1822, 1854
BbsI GAAGAC 1 cut(s) 3063
Bbv12I GWGCWC 3 cut(s) 1004, 2843, 3068
BccI CCATC 8 cut(s) 147, 379, 850, 1268, 1678, 1795, 3031, 3114
BceAI ACGGC 3 cut(s) 145, 1620, 2275
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 8 cut(s) 21, 36, 186, 366, 417, 456, 2132, 2199
BciVI GTATCC 3 cut(s) 174, 1408, 2383
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 2 cut(s) 246, 378
BcoDI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BfmI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2915
BfoI RGCGCY 3 cut(s) 173, 206, 566
BfuAI ACCTGC 1 cut(s) 827
BfuI GTATCC 3 cut(s) 174, 1408, 2383
BglI GCCNNNNNGGC 3 cut(s) 22, 211, 833
BglII AGATCT 2 cut(s) 2013, 2058
Bme18I GGWCC 7 cut(s) 221, 533, 690, 839, 1069, 1136, 1268
BmeT110I CYCGRG 1 cut(s) 1304
BmiI GGNNCC 9 cut(s) 171, 204, 223, 348, 370, 390, 564, 826, 1804
BmrI ACTGGG 1 cut(s) 824
BmuI ACTGGG 1 cut(s) 824
BpiI GAAGAC 1 cut(s) 3063
BpmI CTGGAG 7 cut(s) 384, 474, 597, 843, 1440, 1622, 1821
BpuEI CTTGAG 1 cut(s) 2079
BpuMI CCSGG 2 cut(s) 246, 378
BsaAI YACGTR 1 cut(s) 989
BsaBI GATNNNNATC 1 cut(s) 2608
BsaHI GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
BsaI GGTCTC 1 cut(s) 2141
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bse118I RCCGGY 2 cut(s) 205, 317
Bse1I ACTGG 9 cut(s) 401, 614, 826, 830, 976, 1423, 1804, 2008, 2667
Bse3DI GCAATG 3 cut(s) 552, 1746, 1914
Bse8I GATNNNNATC 1 cut(s) 2608
BseBI CCWGG 8 cut(s) 21, 36, 186, 366, 417, 456, 2132, 2199
BseJI GATNNNNATC 1 cut(s) 2608
BseMI GCAATG 3 cut(s) 552, 1746, 1914
BseMII CTCAG 8 cut(s) 1620, 1716, 1911, 2277, 2408, 2856, 2898, 2918
BseNI ACTGG 9 cut(s) 401, 614, 826, 830, 976, 1423, 1804, 2008, 2667
BseRI GAGGAG 8 cut(s) 183, 186, 300, 384, 387, 477, 924, 1587
BseSI GKGCMC 2 cut(s) 373, 1004
BseX3I CGGCCG 1 cut(s) 116
BseYI CCCAGC 2 cut(s) 470, 494
Bsh1236I CGCG 2 cut(s) 871, 2157
Bsh1285I CGRYCG 2 cut(s) 119, 377
BshNI GGYRCC 5 cut(s) 169, 202, 346, 368, 562
BshTI ACCGGT 1 cut(s) 317
BsiEI CGRYCG 2 cut(s) 119, 377
BsiHKAI GWGCWC 3 cut(s) 1004, 2843, 3068
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 6 cut(s) 167, 200, 206, 245, 318, 377
BslFI GGGAC 1 cut(s) 1810
BsmAI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BsmFI GGGAC 1 cut(s) 1810
BsmI GAATGC 5 cut(s) 768, 1411, 1730, 2175, 2487
Bso31I GGTCTC 1 cut(s) 2141
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 7 cut(s) 373, 829, 1004, 1107, 1807, 2843, 3068
Bsp1407I TGTACA 1 cut(s) 2292
BspCNI CTCAG 8 cut(s) 1621, 1715, 1912, 2276, 2407, 2855, 2897, 2917
BspFNI CGCG 2 cut(s) 871, 2157
BspHI TCATGA 1 cut(s) 1179
BspLI GGNNCC 9 cut(s) 171, 204, 223, 348, 370, 390, 564, 826, 1804
BspMAI CTGCAG 4 cut(s) 983, 1432, 1720, 2919
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 3014
BspQI GCTCTTC 1 cut(s) 1095
BspT107I GGYRCC 5 cut(s) 169, 202, 346, 368, 562
BspTNI GGTCTC 1 cut(s) 2141
BsrDI GCAATG 3 cut(s) 552, 1746, 1914
BsrFI RCCGGY 2 cut(s) 205, 317
BsrGI TGTACA 1 cut(s) 2292
BsrI ACTGG 9 cut(s) 401, 614, 826, 830, 976, 1423, 1804, 2008, 2667
BssAI RCCGGY 2 cut(s) 205, 317
BssNI GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
BssT1I CCWWGG 4 cut(s) 686, 913, 1077, 1264
Bst2UI CCWGG 8 cut(s) 21, 36, 186, 366, 417, 456, 2132, 2199
Bst4CI ACNGT 6 cut(s) 338, 1354, 1514, 2302, 2477, 2521
Bst6I CTCTTC 1 cut(s) 1095
BstACI GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstAUI TGTACA 1 cut(s) 2292
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 9 cut(s) 263, 468, 588, 744, 942, 1371, 1438, 2171, 2706
BstDEI CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
BstDSI CCRYGG 2 cut(s) 2155, 2696
BstEII GGTNACC 1 cut(s) 2227
BstENI CCTNNNNNAGG 1 cut(s) 414
BstFNI CGCG 2 cut(s) 871, 2157
BstH2I RGCGCY 3 cut(s) 173, 206, 566
BstHHI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
BstMAI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BstMCI CGRYCG 2 cut(s) 119, 377
BstNI CCWGG 8 cut(s) 21, 36, 186, 366, 417, 456, 2132, 2199
BstNSI RCATGY 3 cut(s) 590, 809, 1440
BstPI GGTNACC 1 cut(s) 2227
BstSFI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2915
BstSLI GKGCMC 2 cut(s) 373, 1004
BstUI CGCG 2 cut(s) 871, 2157
BstV2I GAAGAC 1 cut(s) 3063
BstX2I RGATCY 4 cut(s) 1014, 2013, 2058, 3019
BstYI RGATCY 4 cut(s) 1014, 2013, 2058, 3019
BstZI CGGCCG 1 cut(s) 116
BsuI GTATCC 3 cut(s) 174, 1408, 2383
BtgI CCRYGG 2 cut(s) 2155, 2696
BtgZI GCGATG 1 cut(s) 2137
BtsI GCAGTG 6 cut(s) 607, 1023, 1255, 1440, 2049, 2115
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 9 cut(s) 263, 468, 588, 744, 942, 1371, 1438, 2171, 2706
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 1179
CfoI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
Cfr10I RCCGGY 2 cut(s) 205, 317
Cfr42I CCGCGG 1 cut(s) 2158
CseI GACGC 5 cut(s) 166, 523, 529, 2744, 2982
CsiI ACCWGGT 2 cut(s) 34, 415
Csp6I GTAC 5 cut(s) 321, 1515, 2152, 2293, 2598
CspAI ACCGGT 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 1204, 1239
CviQI GTAC 5 cut(s) 321, 1515, 2152, 2293, 2598
DdeI CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
DinI GGCGCC 3 cut(s) 171, 204, 564
DraIII CACNNNGTG 1 cut(s) 419
EaeI YGGCCR 2 cut(s) 116, 2308
EagI CGGCCG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
EciI GGCGGA 2 cut(s) 345, 927
Ecl136II GAGCTC 2 cut(s) 2841, 3066
EclXI CGGCCG 1 cut(s) 116
Eco130I CCWWGG 4 cut(s) 686, 913, 1077, 1264
Eco147I AGGCCT 3 cut(s) 184, 253, 2092
Eco24I GRGCYC 5 cut(s) 829, 1107, 1807, 2843, 3068
Eco31I GGTCTC 1 cut(s) 2141
Eco32I GATATC 1 cut(s) 2857
Eco47I GGWCC 7 cut(s) 221, 533, 690, 839, 1069, 1136, 1268
Eco52I CGGCCG 1 cut(s) 116
Eco53kI GAGCTC 2 cut(s) 2841, 3066
Eco57I CTGAAG 4 cut(s) 645, 1119, 1845, 2579
Eco88I CYCGRG 1 cut(s) 1304
Eco91I GGTNACC 1 cut(s) 2227
EcoICRI GAGCTC 2 cut(s) 2841, 3066
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 2227
EcoRI GAATTC 1 cut(s) 2877
EcoRII CCWGG 8 cut(s) 19, 34, 184, 364, 415, 454, 2130, 2197
EcoRV GATATC 1 cut(s) 2857
EcoT14I CCWWGG 4 cut(s) 686, 913, 1077, 1264
EcoT22I ATGCAT 1 cut(s) 588
EcoT38I GRGCYC 5 cut(s) 829, 1107, 1807, 2843, 3068
EgeI GGCGCC 3 cut(s) 171, 204, 564
EheI GGCGCC 3 cut(s) 171, 204, 564
ErhI CCWWGG 4 cut(s) 686, 913, 1077, 1264
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 1810
FauI CCCGC 3 cut(s) 270, 374, 2150
FauNDI CATATG 1 cut(s) 3082
FbaI TGATCA 1 cut(s) 1192
FriOI GRGCYC 5 cut(s) 829, 1107, 1807, 2843, 3068
GlaI GCGC 5 cut(s) 171, 204, 564, 2174, 2286
GsaI CCCAGC 2 cut(s) 474, 498
GsuI CTGGAG 7 cut(s) 384, 474, 597, 843, 1440, 1622, 1821
HaeII RGCGCY 3 cut(s) 173, 206, 566
HapII CCGG 6 cut(s) 167, 200, 206, 245, 318, 377
HgaI GACGC 5 cut(s) 166, 523, 529, 2744, 2982
HhaI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
Hin1I GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
Hin6I GCGC 5 cut(s) 170, 203, 563, 2173, 2285
HinP1I GCGC 5 cut(s) 170, 203, 563, 2173, 2285
HincII GTYRAC 4 cut(s) 64, 281, 2146, 2191
HindII GTYRAC 4 cut(s) 64, 281, 2146, 2191
HindIII AAGCTT 1 cut(s) 2561
HinfI GANTC 8 cut(s) 7, 106, 884, 1240, 1700, 1898, 2207, 2320
HpaI GTTAAC 2 cut(s) 64, 2146
HpaII CCGG 6 cut(s) 167, 200, 206, 245, 318, 377
HphI GGTGA 4 cut(s) 16, 405, 1139, 1862
Hpy166II GTNNAC 9 cut(s) 64, 281, 1002, 2009, 2146, 2191, 2295, 2462, 2534
Hpy188I TCNGA 9 cut(s) 533, 965, 1014, 1099, 1465, 1485, 1630, 2212, 2266
Hpy8I GTNNAC 9 cut(s) 64, 281, 1002, 2009, 2146, 2191, 2295, 2462, 2534
Hpy99I CGWCG 3 cut(s) 160, 523, 2976
HpyCH4III ACNGT 6 cut(s) 338, 1354, 1514, 2302, 2477, 2521
HpyCH4IV ACGT 4 cut(s) 478, 988, 1395, 1540
HpyF3I CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
HpySE526I ACGT 4 cut(s) 478, 988, 1395, 1540
Hsp92I GRCGYC 7 cut(s) 158, 170, 203, 515, 521, 563, 2974
HspAI GCGC 5 cut(s) 170, 203, 563, 2173, 2285
KasI GGCGCC 3 cut(s) 169, 202, 562
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 2 cut(s) 64, 2146
KspI CCGCGG 1 cut(s) 2158
LguI GCTCTTC 1 cut(s) 1095
LmnI GCTCC 6 cut(s) 554, 824, 1342, 1421, 1802, 2838
MabI ACCWGGT 2 cut(s) 34, 415
MaeII ACGT 4 cut(s) 478, 988, 1395, 1540
MaeIII GTNAC 5 cut(s) 4, 1247, 2041, 2227, 2521
MboII GAAGA 9 cut(s) 1112, 1375, 1460, 1842, 2537, 2604, 2792, 3031, 3068
MflI RGATCY 4 cut(s) 1014, 2013, 2058, 3019
MhlI GDGCHC 7 cut(s) 373, 829, 1004, 1107, 1807, 2843, 3068
MlsI TGGCCA 1 cut(s) 2310
MluNI TGGCCA 1 cut(s) 2310
Mly113I GGCGCC 3 cut(s) 170, 203, 563
MlyI GAGTC 3 cut(s) 1234, 1694, 2201
MmeI TCCRAC 2 cut(s) 563, 1096
Mox20I TGGCCA 1 cut(s) 2310
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 253
MscI TGGCCA 1 cut(s) 2310
MseI TTAA 6 cut(s) 63, 2073, 2145, 2330, 2588, 2721
MslI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
Msp20I TGGCCA 1 cut(s) 2310
MspA1I CMGCKG 6 cut(s) 13, 494, 1433, 1697, 2157, 2381
MspI CCGG 6 cut(s) 167, 200, 206, 245, 318, 377
Mva1269I GAATGC 5 cut(s) 768, 1411, 1730, 2175, 2487
MvaI CCWGG 8 cut(s) 21, 36, 186, 366, 417, 456, 2132, 2199
MvnI CGCG 2 cut(s) 871, 2157
NarI GGCGCC 3 cut(s) 170, 203, 563
NciI CCSGG 2 cut(s) 246, 378
NdeI CATATG 1 cut(s) 3082
NlaIV GGNNCC 9 cut(s) 171, 204, 223, 348, 370, 390, 564, 826, 1804
NmuCI GTSAC 2 cut(s) 4, 1247
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 3 cut(s) 590, 809, 1440
OliI CACNNNNGTG 1 cut(s) 2300
PaeI GCATGC 2 cut(s) 590, 1440
PagI TCATGA 1 cut(s) 1179
PceI AGGCCT 3 cut(s) 184, 253, 2092
PciSI GCTCTTC 1 cut(s) 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 1150
PctI GAATGC 5 cut(s) 768, 1411, 1730, 2175, 2487
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 4 cut(s) 106, 884, 1898, 2320
PflMI CCANNNNNTGG 3 cut(s) 365, 1078, 1793
PfoI TCCNGGA 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 317
PleI GAGTC 3 cut(s) 1234, 1694, 2201
PluTI GGCGCC 3 cut(s) 173, 206, 566
PpsI GAGTC 3 cut(s) 1234, 1694, 2201
Ppu21I YACGTR 1 cut(s) 989
PsiI TTATAA 1 cut(s) 1530
Psp124BI GAGCTC 2 cut(s) 2843, 3068
Psp6I CCWGG 8 cut(s) 19, 34, 184, 364, 415, 454, 2130, 2197
PspEI GGTNACC 1 cut(s) 2227
PspFI CCCAGC 2 cut(s) 470, 494
PspGI CCWGG 8 cut(s) 19, 34, 184, 364, 415, 454, 2130, 2197
PspN4I GGNNCC 9 cut(s) 171, 204, 223, 348, 370, 390, 564, 826, 1804
PstI CTGCAG 4 cut(s) 983, 1432, 1720, 2919
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 4 cut(s) 1014, 2013, 2058, 3019
PvuII CAGCTG 4 cut(s) 494, 1433, 1697, 2381
RsaI GTAC 5 cut(s) 322, 1516, 2153, 2294, 2599
RsaNI GTAC 5 cut(s) 321, 1515, 2152, 2293, 2598
RseI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
SacI GAGCTC 2 cut(s) 2843, 3068
SacII CCGCGG 1 cut(s) 2158
SapI GCTCTTC 1 cut(s) 1095
SaqAI TTAA 6 cut(s) 63, 2073, 2145, 2330, 2588, 2721
SchI GAGTC 3 cut(s) 1234, 1694, 2201
SduI GDGCHC 7 cut(s) 373, 829, 1004, 1107, 1807, 2843, 3068
SexAI ACCWGGT 2 cut(s) 34, 415
SfcI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2915
SfoI GGCGCC 3 cut(s) 171, 204, 564
Sfr303I CCGCGG 1 cut(s) 2158
SgrAI CRCCGGYG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 2158
SinI GGWCC 7 cut(s) 221, 533, 690, 839, 1069, 1136, 1268
SmiMI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
SmlI CTYRAG 1 cut(s) 2094
SmoI CTYRAG 1 cut(s) 2094
SphI GCATGC 2 cut(s) 590, 1440
SseBI AGGCCT 3 cut(s) 184, 253, 2092
SspDI GGCGCC 3 cut(s) 169, 202, 562
SspI AATATT 1 cut(s) 2083
SstI GAGCTC 2 cut(s) 2843, 3068
StuI AGGCCT 3 cut(s) 184, 253, 2092
StyI CCWWGG 4 cut(s) 686, 913, 1077, 1264
TaaI ACNGT 6 cut(s) 338, 1354, 1514, 2302, 2477, 2521
TaiI ACGT 4 cut(s) 481, 991, 1398, 1543
TaqI TCGA 4 cut(s) 155, 2323, 2805, 3068
TatI WGTACW 3 cut(s) 1514, 2292, 2597
TauI GCSGC 3 cut(s) 121, 214, 442
TfiI GAWTC 4 cut(s) 106, 884, 1898, 2320
Tru1I TTAA 6 cut(s) 63, 2073, 2145, 2330, 2588, 2721
Tru9I TTAA 6 cut(s) 63, 2073, 2145, 2330, 2588, 2721
TseFI GTSAC 2 cut(s) 4, 1247
Tsp45I GTSAC 2 cut(s) 4, 1247
TspGWI ACGGA 3 cut(s) 880, 2447, 2713
Van91I CCANNNNNTGG 3 cut(s) 365, 1078, 1793
VneI GTGCAC 1 cut(s) 1000
VpaK11BI GGWCC 7 cut(s) 221, 533, 690, 839, 1069, 1136, 1268
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 8 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895, 3114
XceI RCATGY 3 cut(s) 590, 809, 1440
XcmI CCANNNNNNNNNTGG 2 cut(s) 1114, 1262
XmnI GAANNNNTTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.