Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 200 | 3.6e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 838 |
| AcsI | RAATTY | 2 cut(s) | 632, 778 |
| AfaI | GTAC | 2 cut(s) | 307, 846 |
| AflII | CTTAAG | 2 cut(s) | 431, 638 |
| AgsI | TTSAA | 3 cut(s) | 195, 729, 814 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 590, 622 |
| AleI | CACNNNNGTG | 1 cut(s) | 123 |
| AluBI | AGCT | 3 cut(s) | 83, 281, 643 |
| AluI | AGCT | 3 cut(s) | 83, 281, 643 |
| Alw26I | GTCTC | 2 cut(s) | 186, 226 |
| AoxI | GGCC | 3 cut(s) | 272, 491, 838 |
| ApeKI | GCWGC | 2 cut(s) | 98, 278 |
| ApoI | RAATTY | 2 cut(s) | 632, 778 |
| AseI | ATTAAT | 2 cut(s) | 149, 371 |
| AspLEI | GCGC | 1 cut(s) | 420 |
| AspS9I | GGNCC | 2 cut(s) | 72, 272 |
| AsuC2I | CCSGG | 1 cut(s) | 114 |
| AvaII | GGWCC | 1 cut(s) | 72 |
| BalI | TGGCCA | 1 cut(s) | 840 |
| BbsI | GAAGAC | 1 cut(s) | 20 |
| BbvI | GCAGC | 2 cut(s) | 85, 290 |
| BccI | CCATC | 1 cut(s) | 242 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BclI | TGATCA | 1 cut(s) | 690 |
| BcnI | CCSGG | 1 cut(s) | 114 |
| BcoDI | GTCTC | 2 cut(s) | 186, 226 |
| BfaI | CTAG | 4 cut(s) | 341, 702, 720, 743 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BfoI | RGCGCY | 1 cut(s) | 421 |
| BfrI | CTTAAG | 2 cut(s) | 431, 638 |
| BglII | AGATCT | 1 cut(s) | 664 |
| BisI | GCNGC | 2 cut(s) | 99, 279 |
| BlsI | GCNGC | 2 cut(s) | 100, 280 |
| BmcAI | AGTACT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 270 |
| Bme18I | GGWCC | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 2 cut(s) | 72, 272 |
| BmrFI | CCNGG | 2 cut(s) | 114, 270 |
| BmrI | ACTGGG | 1 cut(s) | 212 |
| BmsI | GCATC | 2 cut(s) | 220, 537 |
| BmuI | ACTGGG | 1 cut(s) | 212 |
| BpiI | GAAGAC | 1 cut(s) | 20 |
| BpuEI | CTTGAG | 2 cut(s) | 106, 160 |
| BpuMI | CCSGG | 1 cut(s) | 114 |
| BsaI | GGTCTC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 4 cut(s) | 227, 268, 269, 488 |
| BsaWI | WCCGGW | 1 cut(s) | 69 |
| Bse1I | ACTGG | 2 cut(s) | 218, 313 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseDI | CCNNGG | 4 cut(s) | 227, 268, 269, 488 |
| BseGI | GGATG | 3 cut(s) | 211, 528, 861 |
| BseNI | ACTGG | 2 cut(s) | 218, 313 |
| BseXI | GCAGC | 2 cut(s) | 85, 290 |
| BshFI | GGCC | 3 cut(s) | 274, 493, 840 |
| BsiSI | CCGG | 2 cut(s) | 70, 114 |
| BsmAI | GTCTC | 2 cut(s) | 186, 226 |
| BsmI | GAATGC | 2 cut(s) | 356, 837 |
| BsnI | GGCC | 3 cut(s) | 274, 493, 840 |
| Bso31I | GGTCTC | 1 cut(s) | 186 |
| Bsp143I | GATC | 2 cut(s) | 664, 690 |
| Bsp19I | CCATGG | 2 cut(s) | 227, 488 |
| BspANI | GGCC | 3 cut(s) | 274, 493, 840 |
| BspMAI | CTGCAG | 1 cut(s) | 280 |
| BspTI | CTTAAG | 2 cut(s) | 431, 638 |
| BspTNI | GGTCTC | 1 cut(s) | 186 |
| BsrI | ACTGG | 2 cut(s) | 218, 313 |
| BssECI | CCNNGG | 4 cut(s) | 227, 268, 269, 488 |
| BssMI | GATC | 2 cut(s) | 664, 690 |
| BssT1I | CCWWGG | 2 cut(s) | 227, 488 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 1 cut(s) | 580 |
| Bst6I | CTCTTC | 1 cut(s) | 501 |
| BstAFI | CTTAAG | 2 cut(s) | 431, 638 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 362 |
| BstC8I | GCNNGC | 2 cut(s) | 276, 460 |
| BstDEI | CTNAG | 1 cut(s) | 785 |
| BstDSI | CCRYGG | 2 cut(s) | 227, 488 |
| BstEII | GGTNACC | 2 cut(s) | 263, 344 |
| BstF5I | GGATG | 3 cut(s) | 211, 528, 861 |
| BstH2I | RGCGCY | 1 cut(s) | 421 |
| BstHHI | GCGC | 1 cut(s) | 420 |
| BstKTI | GATC | 2 cut(s) | 667, 693 |
| BstMAI | GTCTC | 2 cut(s) | 186, 226 |
| BstMBI | GATC | 2 cut(s) | 664, 690 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 362, 525 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstNSI | RCATGY | 2 cut(s) | 112, 462 |
| BstPI | GGTNACC | 2 cut(s) | 263, 344 |
| BstSCI | CCNGG | 2 cut(s) | 112, 268 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 2 cut(s) | 85, 290 |
| BstV2I | GAAGAC | 1 cut(s) | 20 |
| BstX2I | RGATCY | 1 cut(s) | 664 |
| BstYI | RGATCY | 1 cut(s) | 664 |
| BsuRI | GGCC | 3 cut(s) | 274, 493, 840 |
| BtgI | CCRYGG | 2 cut(s) | 227, 488 |
| BtsCI | GGATG | 3 cut(s) | 211, 528, 861 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| Cac8I | GCNNGC | 2 cut(s) | 276, 460 |
| CfoI | GCGC | 1 cut(s) | 420 |
| Cfr13I | GGNCC | 2 cut(s) | 72, 272 |
| Csp6I | GTAC | 2 cut(s) | 306, 845 |
| CviAII | CATG | 9 cut(s) | 109, 228, 335, 459, 489, 507, 557, 836, 890 |
| CviQI | GTAC | 2 cut(s) | 306, 845 |
| DdeI | CTNAG | 1 cut(s) | 785 |
| DpnI | GATC | 2 cut(s) | 666, 692 |
| DpnII | GATC | 2 cut(s) | 664, 690 |
| EaeI | YGGCCR | 1 cut(s) | 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 501 |
| EarI | CTCTTC | 1 cut(s) | 501 |
| Eco130I | CCWWGG | 2 cut(s) | 227, 488 |
| Eco31I | GGTCTC | 1 cut(s) | 186 |
| Eco32I | GATATC | 1 cut(s) | 791 |
| Eco47I | GGWCC | 1 cut(s) | 72 |
| Eco91I | GGTNACC | 2 cut(s) | 263, 344 |
| EcoO65I | GGTNACC | 2 cut(s) | 263, 344 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| EcoRV | GATATC | 1 cut(s) | 791 |
| EcoT14I | CCWWGG | 2 cut(s) | 227, 488 |
| EcoT22I | ATGCAT | 1 cut(s) | 837 |
| ErhI | CCWWGG | 2 cut(s) | 227, 488 |
| FaeI | CATG | 9 cut(s) | 112, 231, 338, 462, 492, 510, 560, 839, 893 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 72, 104 |
| FatI | CATG | 9 cut(s) | 108, 227, 334, 458, 488, 506, 556, 835, 889 |
| FbaI | TGATCA | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 279 |
| FokI | GGATG | 3 cut(s) | 198, 515, 868 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 279 |
| FspBI | CTAG | 4 cut(s) | 341, 702, 720, 743 |
| GlaI | GCGC | 1 cut(s) | 419 |
| GluI | GCNGC | 2 cut(s) | 99, 279 |
| HaeII | RGCGCY | 1 cut(s) | 421 |
| HaeIII | GGCC | 3 cut(s) | 274, 493, 840 |
| HapII | CCGG | 2 cut(s) | 70, 114 |
| HhaI | GCGC | 1 cut(s) | 420 |
| Hin1II | CATG | 9 cut(s) | 112, 231, 338, 462, 492, 510, 560, 839, 893 |
| Hin6I | GCGC | 1 cut(s) | 418 |
| HinP1I | GCGC | 1 cut(s) | 418 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 2 cut(s) | 440, 873 |
| HpaII | CCGG | 2 cut(s) | 70, 114 |
| Hpy166II | GTNNAC | 1 cut(s) | 75 |
| Hpy188I | TCNGA | 2 cut(s) | 533, 673 |
| Hpy188III | TCNNGA | 4 cut(s) | 195, 566, 743, 794 |
| Hpy8I | GTNNAC | 1 cut(s) | 75 |
| HpyAV | CCTTC | 3 cut(s) | 60, 487, 563 |
| HpyCH4III | ACNGT | 1 cut(s) | 580 |
| HpyCH4V | TGCA | 6 cut(s) | 278, 356, 458, 506, 584, 835 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 362, 525 |
| HpyF3I | CTNAG | 1 cut(s) | 785 |
| Hsp92II | CATG | 9 cut(s) | 112, 231, 338, 462, 492, 510, 560, 839, 893 |
| HspAI | GCGC | 1 cut(s) | 418 |
| Ksp22I | TGATCA | 1 cut(s) | 690 |
| Kzo9I | GATC | 2 cut(s) | 664, 690 |
| LmnI | GCTCC | 1 cut(s) | 106 |
| LpnPI | CCDG | 8 cut(s) | 83, 127, 231, 255, 282, 288, 294, 807 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 290 |
| LweI | GCATC | 2 cut(s) | 220, 537 |
| MaeI | CTAG | 4 cut(s) | 341, 702, 720, 743 |
| MaeIII | GTNAC | 4 cut(s) | 116, 263, 344, 758 |
| MalI | GATC | 2 cut(s) | 666, 692 |
| MboI | GATC | 2 cut(s) | 664, 690 |
| MboII | GAAGA | 6 cut(s) | 25, 465, 488, 554, 606, 609 |
| MflI | RGATCY | 1 cut(s) | 664 |
| MlsI | TGGCCA | 1 cut(s) | 840 |
| MluCI | AATT | 6 cut(s) | 142, 150, 368, 514, 632, 778 |
| MluNI | TGGCCA | 1 cut(s) | 840 |
| MlyI | GAGTC | 1 cut(s) | 882 |
| MnlI | CCTC | 4 cut(s) | 57, 184, 478, 504 |
| Mox20I | TGGCCA | 1 cut(s) | 840 |
| Mph1103I | ATGCAT | 1 cut(s) | 837 |
| MscI | TGGCCA | 1 cut(s) | 840 |
| MseI | TTAA | 9 cut(s) | 149, 234, 240, 258, 371, 432, 512, 630, 639 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| Msp20I | TGGCCA | 1 cut(s) | 840 |
| MspCI | CTTAAG | 2 cut(s) | 431, 638 |
| MspI | CCGG | 2 cut(s) | 70, 114 |
| MspR9I | CCNGG | 2 cut(s) | 114, 270 |
| Mva1269I | GAATGC | 2 cut(s) | 356, 837 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 362, 525 |
| NciI | CCSGG | 1 cut(s) | 114 |
| NcoI | CCATGG | 2 cut(s) | 227, 488 |
| NdeII | GATC | 2 cut(s) | 664, 690 |
| NlaIII | CATG | 9 cut(s) | 112, 231, 338, 462, 492, 510, 560, 839, 893 |
| NmeAIII | GCCGAG | 1 cut(s) | 896 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NsiI | ATGCAT | 1 cut(s) | 837 |
| NspI | RCATGY | 2 cut(s) | 112, 462 |
| OliI | CACNNNNGTG | 1 cut(s) | 123 |
| PaeI | GCATGC | 1 cut(s) | 462 |
| PasI | CCCWGGG | 1 cut(s) | 269 |
| PctI | GAATGC | 2 cut(s) | 356, 837 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PkrI | GCNGC | 2 cut(s) | 100, 280 |
| PleI | GAGTC | 1 cut(s) | 881 |
| PpsI | GAGTC | 1 cut(s) | 881 |
| PshBI | ATTAAT | 2 cut(s) | 149, 371 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspEI | GGTNACC | 2 cut(s) | 263, 344 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| PspPI | GGNCC | 2 cut(s) | 72, 272 |
| PstI | CTGCAG | 1 cut(s) | 280 |
| PsuI | RGATCY | 1 cut(s) | 664 |
| RsaI | GTAC | 2 cut(s) | 307, 846 |
| RsaNI | GTAC | 2 cut(s) | 306, 845 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| SaqAI | TTAA | 9 cut(s) | 149, 234, 240, 258, 371, 432, 512, 630, 639 |
| SatI | GCNGC | 2 cut(s) | 99, 279 |
| Sau3AI | GATC | 2 cut(s) | 664, 690 |
| Sau96I | GGNCC | 2 cut(s) | 72, 272 |
| ScaI | AGTACT | 1 cut(s) | 307 |
| SchI | GAGTC | 1 cut(s) | 882 |
| ScrFI | CCNGG | 2 cut(s) | 114, 270 |
| SfaNI | GCATC | 2 cut(s) | 220, 537 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SinI | GGWCC | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| SmlI | CTYRAG | 4 cut(s) | 121, 175, 431, 638 |
| SmoI | CTYRAG | 4 cut(s) | 121, 175, 431, 638 |
| SphI | GCATGC | 1 cut(s) | 462 |
| Sse9I | AATT | 6 cut(s) | 142, 150, 368, 514, 632, 778 |
| SspMI | CTAG | 4 cut(s) | 341, 702, 720, 743 |
| StyD4I | CCNGG | 2 cut(s) | 112, 268 |
| StyI | CCWWGG | 2 cut(s) | 227, 488 |
| TaaI | ACNGT | 1 cut(s) | 580 |
| TasI | AATT | 6 cut(s) | 142, 150, 368, 514, 632, 778 |
| TatI | WGTACW | 1 cut(s) | 305 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 9 cut(s) | 149, 234, 240, 258, 371, 432, 512, 630, 639 |
| Tru9I | TTAA | 9 cut(s) | 149, 234, 240, 258, 371, 432, 512, 630, 639 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| TseI | GCWGC | 2 cut(s) | 98, 278 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 2 cut(s) | 725, 878 |
| TspGWI | ACGGA | 2 cut(s) | 710, 843 |
| TspRI | CASTG | 1 cut(s) | 193 |
| Vha464I | CTTAAG | 2 cut(s) | 431, 638 |
| VpaK11BI | GGWCC | 1 cut(s) | 72 |
| VspI | ATTAAT | 2 cut(s) | 149, 371 |
| XapI | RAATTY | 2 cut(s) | 632, 778 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XceI | RCATGY | 2 cut(s) | 112, 462 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 225, 654, 855 |
| XspI | CTAG | 4 cut(s) | 341, 702, 720, 743 |
| ZrmI | AGTACT | 1 cut(s) | 307 |
| Zsp2I | ATGCAT | 1 cut(s) | 837 |