Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 201 | 8.3e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 782 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 340 |
| AccBSI | CCGCTC | 1 cut(s) | 745 |
| AccII | CGCG | 2 cut(s) | 19, 300 |
| AciI | CCGC | 2 cut(s) | 671, 743 |
| AcsI | RAATTY | 2 cut(s) | 6, 824 |
| AcyI | GRCGYC | 1 cut(s) | 129 |
| AfaI | GTAC | 2 cut(s) | 553, 662 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 6 cut(s) | 75, 197, 395, 523, 533, 612 |
| AjnI | CCWGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| AluBI | AGCT | 4 cut(s) | 281, 581, 652, 792 |
| AluI | AGCT | 4 cut(s) | 281, 581, 652, 792 |
| ApeKI | GCWGC | 3 cut(s) | 278, 578, 581 |
| ApoI | RAATTY | 2 cut(s) | 6, 824 |
| AspLEI | GCGC | 4 cut(s) | 19, 187, 783, 817 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| BaeGI | GKGCMC | 1 cut(s) | 170 |
| BbvI | GCAGC | 3 cut(s) | 290, 568, 590 |
| BccI | CCATC | 3 cut(s) | 242, 501, 586 |
| BciT130I | CCWGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| BciVI | GTATCC | 1 cut(s) | 642 |
| BfaI | CTAG | 2 cut(s) | 408, 636 |
| BfmI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| BfoI | RGCGCY | 1 cut(s) | 188 |
| BfuI | GTATCC | 1 cut(s) | 642 |
| BisI | GCNGC | 3 cut(s) | 279, 579, 582 |
| BlsI | GCNGC | 3 cut(s) | 280, 580, 583 |
| BmcAI | AGTACT | 1 cut(s) | 553 |
| Bme1390I | CCNGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmrFI | CCNGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| BmsI | GCATC | 4 cut(s) | 220, 292, 467, 810 |
| BpuEI | CTTGAG | 1 cut(s) | 517 |
| BsaHI | GRCGYC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 4 cut(s) | 157, 227, 488, 768 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| Bse3DI | GCAATG | 1 cut(s) | 790 |
| BseBI | CCWGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| BseDI | CCNNGG | 4 cut(s) | 157, 227, 488, 768 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| BseMI | GCAATG | 1 cut(s) | 790 |
| BseMII | CTCAG | 3 cut(s) | 43, 702, 766 |
| BseRI | GAGGAG | 3 cut(s) | 303, 457, 474 |
| BseSI | GKGCMC | 1 cut(s) | 170 |
| BseXI | GCAGC | 3 cut(s) | 290, 568, 590 |
| Bsh1236I | CGCG | 2 cut(s) | 19, 300 |
| BslFI | GGGAC | 2 cut(s) | 506, 695 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| BsmFI | GGGAC | 2 cut(s) | 506, 695 |
| BsmI | GAATGC | 1 cut(s) | 580 |
| Bsp1286I | GDGCHC | 1 cut(s) | 170 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| Bsp68I | TCGCGA | 1 cut(s) | 300 |
| BspACI | CCGC | 2 cut(s) | 671, 743 |
| BspCNI | CTCAG | 3 cut(s) | 42, 703, 765 |
| BspFNI | CGCG | 2 cut(s) | 19, 300 |
| BspHI | TCATGA | 1 cut(s) | 851 |
| BspMAI | CTGCAG | 3 cut(s) | 280, 586, 649 |
| BsrBI | CCGCTC | 1 cut(s) | 745 |
| BsrDI | GCAATG | 1 cut(s) | 790 |
| BssECI | CCNNGG | 4 cut(s) | 157, 227, 488, 768 |
| BssNI | GRCGYC | 1 cut(s) | 129 |
| BssT1I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| Bst2UI | CCWGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| Bst4CI | ACNGT | 1 cut(s) | 66 |
| BstACI | GRCGYC | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 3 cut(s) | 669, 743, 813 |
| BstDEI | CTNAG | 4 cut(s) | 29, 601, 711, 752 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstFNI | CGCG | 2 cut(s) | 19, 300 |
| BstH2I | RGCGCY | 1 cut(s) | 188 |
| BstHHI | GCGC | 4 cut(s) | 19, 187, 783, 817 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 738, 789, 798 |
| BstNI | CCWGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| BstNSI | RCATGY | 1 cut(s) | 811 |
| BstSCI | CCNGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| BstSFI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| BstSLI | GKGCMC | 1 cut(s) | 170 |
| BstUI | CGCG | 2 cut(s) | 19, 300 |
| BstV1I | GCAGC | 3 cut(s) | 290, 568, 590 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 828 |
| BsuI | GTATCC | 1 cut(s) | 642 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsIMutI | CAGTG | 2 cut(s) | 62, 243 |
| BtuMI | TCGCGA | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 3 cut(s) | 669, 743, 813 |
| CciI | TCATGA | 1 cut(s) | 851 |
| CfoI | GCGC | 4 cut(s) | 19, 187, 783, 817 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CseI | GACGC | 1 cut(s) | 118 |
| CsiI | ACCWGGT | 1 cut(s) | 626 |
| Csp6I | GTAC | 2 cut(s) | 552, 661 |
| CviAII | CATG | 4 cut(s) | 84, 489, 808, 852 |
| CviJI | RGCY | 6 cut(s) | 175, 281, 581, 652, 759, 792 |
| CviKI_1 | RGCY | 6 cut(s) | 175, 281, 581, 652, 759, 792 |
| CviQI | GTAC | 2 cut(s) | 552, 661 |
| DdeI | CTNAG | 4 cut(s) | 29, 601, 711, 752 |
| EciI | GGCGGA | 1 cut(s) | 686 |
| Eco130I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| EcoT14I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| EcoT22I | ATGCAT | 1 cut(s) | 803 |
| ErhI | CCWWGG | 3 cut(s) | 157, 227, 488 |
| FaeI | CATG | 4 cut(s) | 87, 492, 811, 855 |
| FaqI | GGGAC | 2 cut(s) | 506, 695 |
| FatI | CATG | 4 cut(s) | 83, 488, 807, 851 |
| FauI | CCCGC | 1 cut(s) | 750 |
| FauNDI | CATATG | 1 cut(s) | 797 |
| Fnu4HI | GCNGC | 3 cut(s) | 279, 579, 582 |
| FokI | GGATG | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 3 cut(s) | 279, 579, 582 |
| FspBI | CTAG | 2 cut(s) | 408, 636 |
| FspI | TGCGCA | 1 cut(s) | 782 |
| GlaI | GCGC | 4 cut(s) | 18, 186, 782, 816 |
| GluI | GCNGC | 3 cut(s) | 279, 579, 582 |
| HaeII | RGCGCY | 1 cut(s) | 188 |
| HgaI | GACGC | 1 cut(s) | 118 |
| HhaI | GCGC | 4 cut(s) | 19, 187, 783, 817 |
| Hin1I | GRCGYC | 1 cut(s) | 129 |
| Hin1II | CATG | 4 cut(s) | 87, 492, 811, 855 |
| Hin6I | GCGC | 4 cut(s) | 17, 185, 781, 815 |
| HinP1I | GCGC | 4 cut(s) | 17, 185, 781, 815 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HinfI | GANTC | 7 cut(s) | 27, 88, 137, 193, 440, 473, 683 |
| HpaI | GTTAAC | 1 cut(s) | 241 |
| Hpy166II | GTNNAC | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 2 cut(s) | 472, 755 |
| Hpy188III | TCNNGA | 3 cut(s) | 141, 299, 852 |
| Hpy8I | GTNNAC | 1 cut(s) | 241 |
| HpyAV | CCTTC | 3 cut(s) | 7, 563, 758 |
| HpyCH4III | ACNGT | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 9 cut(s) | 278, 348, 541, 578, 584, 647, 667, 801, 811 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 738, 789, 798 |
| HpyF3I | CTNAG | 4 cut(s) | 29, 601, 711, 752 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92I | GRCGYC | 1 cut(s) | 129 |
| Hsp92II | CATG | 4 cut(s) | 87, 492, 811, 855 |
| HspAI | GCGC | 4 cut(s) | 17, 185, 781, 815 |
| KspAI | GTTAAC | 1 cut(s) | 241 |
| LmnI | GCTCC | 1 cut(s) | 750 |
| Lsp1109I | GCAGC | 3 cut(s) | 290, 568, 590 |
| LweI | GCATC | 4 cut(s) | 220, 292, 467, 810 |
| MabI | ACCWGGT | 1 cut(s) | 626 |
| MaeI | CTAG | 2 cut(s) | 408, 636 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MbiI | CCGCTC | 1 cut(s) | 745 |
| MboII | GAAGA | 3 cut(s) | 144, 345, 535 |
| MhlI | GDGCHC | 1 cut(s) | 170 |
| MluCI | AATT | 7 cut(s) | 6, 75, 95, 349, 542, 690, 824 |
| MlyI | GAGTC | 2 cut(s) | 21, 677 |
| MmeI | TCCRAC | 2 cut(s) | 395, 411 |
| Mph1103I | ATGCAT | 1 cut(s) | 803 |
| MseI | TTAA | 2 cut(s) | 234, 240 |
| MslI | CAYNNNNRTG | 1 cut(s) | 806 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspR9I | CCNGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| Mva1269I | GAATGC | 1 cut(s) | 580 |
| MvaI | CCWGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| MvnI | CGCG | 2 cut(s) | 19, 300 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 738, 789, 798 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NdeI | CATATG | 1 cut(s) | 797 |
| NlaIII | CATG | 4 cut(s) | 87, 492, 811, 855 |
| NruI | TCGCGA | 1 cut(s) | 300 |
| NsbI | TGCGCA | 1 cut(s) | 782 |
| NsiI | ATGCAT | 1 cut(s) | 803 |
| NspI | RCATGY | 1 cut(s) | 811 |
| PagI | TCATGA | 1 cut(s) | 851 |
| PctI | GAATGC | 1 cut(s) | 580 |
| PfeI | GAWTC | 5 cut(s) | 88, 137, 193, 440, 473 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 340 |
| PfoI | TCCNGGA | 1 cut(s) | 132 |
| PkrI | GCNGC | 3 cut(s) | 280, 580, 583 |
| PleI | GAGTC | 2 cut(s) | 21, 677 |
| PpsI | GAGTC | 2 cut(s) | 21, 677 |
| Psp6I | CCWGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| PspGI | CCWGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PstI | CTGCAG | 3 cut(s) | 280, 586, 649 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RruI | TCGCGA | 1 cut(s) | 300 |
| RsaI | GTAC | 2 cut(s) | 553, 662 |
| RsaNI | GTAC | 2 cut(s) | 552, 661 |
| RseI | CAYNNNNRTG | 1 cut(s) | 806 |
| SaqAI | TTAA | 2 cut(s) | 234, 240 |
| SatI | GCNGC | 3 cut(s) | 279, 579, 582 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| ScaI | AGTACT | 1 cut(s) | 553 |
| SchI | GAGTC | 2 cut(s) | 21, 677 |
| ScrFI | CCNGG | 5 cut(s) | 114, 134, 270, 628, 770 |
| SduI | GDGCHC | 1 cut(s) | 170 |
| SexAI | ACCWGGT | 1 cut(s) | 626 |
| SfaNI | GCATC | 4 cut(s) | 220, 292, 467, 810 |
| SfcI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 806 |
| SmlI | CTYRAG | 1 cut(s) | 496 |
| SmoI | CTYRAG | 1 cut(s) | 496 |
| Sse9I | AATT | 7 cut(s) | 6, 75, 95, 349, 542, 690, 824 |
| SsiI | CCGC | 2 cut(s) | 671, 743 |
| SspMI | CTAG | 2 cut(s) | 408, 636 |
| StyD4I | CCNGG | 5 cut(s) | 112, 132, 268, 626, 768 |
| StyI | CCWWGG | 3 cut(s) | 157, 227, 488 |
| TaaI | ACNGT | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TasI | AATT | 7 cut(s) | 6, 75, 95, 349, 542, 690, 824 |
| TatI | WGTACW | 1 cut(s) | 551 |
| TfiI | GAWTC | 5 cut(s) | 88, 137, 193, 440, 473 |
| Tru1I | TTAA | 2 cut(s) | 234, 240 |
| Tru9I | TTAA | 2 cut(s) | 234, 240 |
| TscAI | CASTG | 2 cut(s) | 69, 250 |
| TseI | GCWGC | 3 cut(s) | 278, 578, 581 |
| TspDTI | ATGAA | 3 cut(s) | 752, 784, 840 |
| TspRI | CASTG | 2 cut(s) | 69, 250 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 2 cut(s) | 6, 824 |
| XceI | RCATGY | 1 cut(s) | 811 |
| XspI | CTAG | 2 cut(s) | 408, 636 |
| ZrmI | AGTACT | 1 cut(s) | 553 |
| Zsp2I | ATGCAT | 1 cut(s) | 803 |