Reverse transcriptase (RNA-dependent DNA polymerase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 26, 1236 |
| AclWI | GGATC | 1 cut(s) | 620 |
| AcsI | RAATTY | 3 cut(s) | 86, 317, 822 |
| AcuI | CTGAAG | 2 cut(s) | 801, 1041 |
| AfaI | GTAC | 2 cut(s) | 196, 859 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 451 |
| AgeI | ACCGGT | 1 cut(s) | 444 |
| AgsI | TTSAA | 5 cut(s) | 92, 545, 701, 1172, 1226 |
| AjiI | CACGTC | 1 cut(s) | 632 |
| AleI | CACNNNNGTG | 1 cut(s) | 447 |
| AluBI | AGCT | 5 cut(s) | 38, 95, 140, 385, 1215 |
| AluI | AGCT | 5 cut(s) | 38, 95, 140, 385, 1215 |
| Alw21I | GWGCWC | 3 cut(s) | 40, 61, 492 |
| Alw26I | GTCTC | 3 cut(s) | 567, 603, 901 |
| AlwI | GGATC | 1 cut(s) | 620 |
| ApeKI | GCWGC | 3 cut(s) | 295, 385, 830 |
| ApoI | RAATTY | 3 cut(s) | 86, 317, 822 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 662, 694 |
| AsiGI | ACCGGT | 1 cut(s) | 444 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 117 |
| AspS9I | GGNCC | 1 cut(s) | 336 |
| AsuC2I | CCSGG | 1 cut(s) | 674 |
| AsuHPI | GGTGA | 4 cut(s) | 434, 635, 680, 929 |
| AvaII | GGWCC | 1 cut(s) | 336 |
| BanII | GRGCYC | 2 cut(s) | 40, 157 |
| Bbv12I | GWGCWC | 3 cut(s) | 40, 61, 492 |
| BbvI | GCAGC | 3 cut(s) | 282, 372, 817 |
| BccI | CCATC | 4 cut(s) | 614, 866, 976, 1034 |
| BceAI | ACGGC | 2 cut(s) | 221, 818 |
| BclI | TGATCA | 2 cut(s) | 217, 1012 |
| BcnI | CCSGG | 1 cut(s) | 674 |
| BcoDI | GTCTC | 3 cut(s) | 567, 603, 901 |
| BisI | GCNGC | 3 cut(s) | 296, 386, 831 |
| BlpI | GCTNAGC | 1 cut(s) | 1211 |
| BlsI | GCNGC | 3 cut(s) | 297, 387, 832 |
| BmcAI | AGTACT | 1 cut(s) | 859 |
| Bme1390I | CCNGG | 1 cut(s) | 674 |
| Bme18I | GGWCC | 1 cut(s) | 336 |
| BmgBI | CACGTC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 1 cut(s) | 336 |
| BmrFI | CCNGG | 1 cut(s) | 674 |
| BmrI | ACTGGG | 1 cut(s) | 891 |
| BmsI | GCATC | 5 cut(s) | 13, 445, 676, 781, 838 |
| BmuI | ACTGGG | 1 cut(s) | 891 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1211 |
| BpuMI | CCSGG | 1 cut(s) | 674 |
| BsaAI | YACGTR | 1 cut(s) | 150 |
| BsaBI | GATNNNNATC | 2 cut(s) | 624, 640 |
| BsaJI | CCNNGG | 1 cut(s) | 955 |
| BsaWI | WCCGGW | 1 cut(s) | 444 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1086, 1116 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 451 |
| Bse118I | RCCGGY | 1 cut(s) | 444 |
| Bse1I | ACTGG | 2 cut(s) | 348, 886 |
| Bse3DI | GCAATG | 1 cut(s) | 335 |
| Bse8I | GATNNNNATC | 2 cut(s) | 624, 640 |
| BseDI | CCNNGG | 1 cut(s) | 955 |
| BseGI | GGATG | 4 cut(s) | 460, 520, 691, 853 |
| BseJI | GATNNNNATC | 2 cut(s) | 624, 640 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BseMI | GCAATG | 1 cut(s) | 335 |
| BseMII | CTCAG | 1 cut(s) | 132 |
| BseNI | ACTGG | 2 cut(s) | 348, 886 |
| BseXI | GCAGC | 3 cut(s) | 282, 372, 817 |
| BshTI | ACCGGT | 1 cut(s) | 444 |
| BsiHKAI | GWGCWC | 3 cut(s) | 40, 61, 492 |
| BsiSI | CCGG | 2 cut(s) | 445, 673 |
| BslFI | GGGAC | 2 cut(s) | 271, 449 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BsmAI | GTCTC | 3 cut(s) | 567, 603, 901 |
| BsmFI | GGGAC | 2 cut(s) | 271, 449 |
| Bsp1286I | GDGCHC | 4 cut(s) | 40, 61, 157, 492 |
| Bsp143I | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1211 |
| Bsp19I | CCATGG | 1 cut(s) | 955 |
| BspACI | CCGC | 2 cut(s) | 26, 1236 |
| BspCNI | CTCAG | 1 cut(s) | 133 |
| BspHI | TCATGA | 2 cut(s) | 40, 868 |
| BspPI | GGATC | 1 cut(s) | 620 |
| BsrDI | GCAATG | 1 cut(s) | 335 |
| BsrFI | RCCGGY | 1 cut(s) | 444 |
| BsrI | ACTGG | 2 cut(s) | 348, 886 |
| BssAI | RCCGGY | 1 cut(s) | 444 |
| BssECI | CCNNGG | 1 cut(s) | 955 |
| BssMI | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| BssT1I | CCWWGG | 1 cut(s) | 955 |
| Bst4CI | ACNGT | 2 cut(s) | 305, 1035 |
| Bst6I | CTCTTC | 2 cut(s) | 570, 660 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 394, 1207 |
| BstBAI | YACGTR | 1 cut(s) | 150 |
| BstDEI | CTNAG | 3 cut(s) | 141, 1125, 1211 |
| BstDSI | CCRYGG | 1 cut(s) | 955 |
| BstEII | GGTNACC | 1 cut(s) | 668 |
| BstF5I | GGATG | 4 cut(s) | 460, 520, 691, 853 |
| BstKTI | GATC | 4 cut(s) | 220, 628, 644, 1015 |
| BstMAI | GTCTC | 3 cut(s) | 567, 603, 901 |
| BstMBI | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 382, 394, 1207 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BstPI | GGTNACC | 1 cut(s) | 668 |
| BstSCI | CCNGG | 1 cut(s) | 672 |
| BstV1I | GCAGC | 3 cut(s) | 282, 372, 817 |
| BtgI | CCRYGG | 1 cut(s) | 955 |
| BtgZI | GCGATG | 1 cut(s) | 478 |
| BtrI | CACGTC | 1 cut(s) | 632 |
| BtsCI | GGATG | 4 cut(s) | 460, 520, 691, 853 |
| BtsI | GCAGTG | 1 cut(s) | 1039 |
| BtsIMutI | CAGTG | 3 cut(s) | 310, 879, 1039 |
| CciI | TCATGA | 2 cut(s) | 40, 868 |
| Cfr10I | RCCGGY | 1 cut(s) | 444 |
| Cfr13I | GGNCC | 1 cut(s) | 336 |
| Csp6I | GTAC | 2 cut(s) | 195, 858 |
| CspAI | ACCGGT | 1 cut(s) | 444 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 618, 653, 1095, 1130 |
| CviQI | GTAC | 2 cut(s) | 195, 858 |
| DdeI | CTNAG | 3 cut(s) | 141, 1125, 1211 |
| DpnI | GATC | 4 cut(s) | 219, 627, 643, 1014 |
| DpnII | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| DraI | TTTAAA | 1 cut(s) | 246 |
| Eam1104I | CTCTTC | 2 cut(s) | 570, 660 |
| EarI | CTCTTC | 2 cut(s) | 570, 660 |
| Ecl136II | GAGCTC | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 955 |
| Eco24I | GRGCYC | 2 cut(s) | 40, 157 |
| Eco47I | GGWCC | 1 cut(s) | 336 |
| Eco53kI | GAGCTC | 1 cut(s) | 38 |
| Eco57I | CTGAAG | 2 cut(s) | 801, 1041 |
| Eco91I | GGTNACC | 1 cut(s) | 668 |
| EcoICRI | GAGCTC | 1 cut(s) | 38 |
| EcoO65I | GGTNACC | 1 cut(s) | 668 |
| EcoT14I | CCWWGG | 1 cut(s) | 955 |
| EcoT38I | GRGCYC | 2 cut(s) | 40, 157 |
| ErhI | CCWWGG | 1 cut(s) | 955 |
| FaqI | GGGAC | 2 cut(s) | 271, 449 |
| FbaI | TGATCA | 2 cut(s) | 217, 1012 |
| Fnu4HI | GCNGC | 3 cut(s) | 296, 386, 831 |
| FokI | GGATG | 4 cut(s) | 467, 527, 698, 860 |
| FriOI | GRGCYC | 2 cut(s) | 40, 157 |
| Fsp4HI | GCNGC | 3 cut(s) | 296, 386, 831 |
| GluI | GCNGC | 3 cut(s) | 296, 386, 831 |
| HapII | CCGG | 2 cut(s) | 445, 673 |
| HincII | GTYRAC | 1 cut(s) | 715 |
| HindII | GTYRAC | 1 cut(s) | 715 |
| HindIII | AAGCTT | 1 cut(s) | 1213 |
| HinfI | GANTC | 6 cut(s) | 560, 727, 865, 1000, 1022, 1079 |
| HpaII | CCGG | 2 cut(s) | 445, 673 |
| HphI | GGTGA | 4 cut(s) | 434, 635, 680, 929 |
| Hpy166II | GTNNAC | 3 cut(s) | 147, 715, 1117 |
| Hpy188I | TCNGA | 7 cut(s) | 159, 217, 288, 514, 619, 864, 1060 |
| Hpy188III | TCNNGA | 4 cut(s) | 41, 175, 662, 869 |
| Hpy8I | GTNNAC | 3 cut(s) | 147, 715, 1117 |
| Hpy99I | CGWCG | 1 cut(s) | 636 |
| HpyAV | CCTTC | 1 cut(s) | 659 |
| HpyCH4III | ACNGT | 2 cut(s) | 305, 1035 |
| HpyCH4IV | ACGT | 3 cut(s) | 149, 607, 631 |
| HpyCH4V | TGCA | 7 cut(s) | 298, 376, 388, 574, 1019, 1044, 1201 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 382, 394, 1207 |
| HpyF3I | CTNAG | 3 cut(s) | 141, 1125, 1211 |
| HpySE526I | ACGT | 3 cut(s) | 149, 607, 631 |
| Ksp22I | TGATCA | 2 cut(s) | 217, 1012 |
| Kzo9I | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| LmnI | GCTCC | 3 cut(s) | 35, 64, 137 |
| LpnPI | CCDG | 7 cut(s) | 75, 160, 361, 458, 686, 867, 969 |
| Lsp1109I | GCAGC | 3 cut(s) | 282, 372, 817 |
| LweI | GCATC | 5 cut(s) | 13, 445, 676, 781, 838 |
| MaeII | ACGT | 3 cut(s) | 149, 607, 631 |
| MaeIII | GTNAC | 3 cut(s) | 603, 668, 772 |
| MalI | GATC | 4 cut(s) | 219, 627, 643, 1014 |
| MboI | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| MboII | GAAGA | 8 cut(s) | 557, 636, 647, 650, 684, 794, 1148, 1151 |
| MhlI | GDGCHC | 4 cut(s) | 40, 61, 157, 492 |
| MluCI | AATT | 9 cut(s) | 86, 117, 223, 317, 418, 822, 960, 979, 1107 |
| MlyI | GAGTC | 2 cut(s) | 569, 874 |
| MmeI | TCCRAC | 1 cut(s) | 492 |
| MnlI | CCTC | 8 cut(s) | 47, 76, 372, 418, 511, 676, 775, 1088 |
| MroXI | GAANNNNTTC | 1 cut(s) | 117 |
| MseI | TTAA | 9 cut(s) | 233, 245, 312, 324, 473, 554, 978, 1068, 1110 |
| MslI | CAYNNNNRTG | 3 cut(s) | 447, 504, 1049 |
| MspI | CCGG | 2 cut(s) | 445, 673 |
| MspR9I | CCNGG | 1 cut(s) | 674 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 382, 394, 1207 |
| NciI | CCSGG | 1 cut(s) | 674 |
| NcoI | CCATGG | 1 cut(s) | 955 |
| NdeII | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| NmuCI | GTSAC | 1 cut(s) | 668 |
| NspI | RCATGY | 1 cut(s) | 392 |
| OliI | CACNNNNGTG | 1 cut(s) | 447 |
| PagI | TCATGA | 2 cut(s) | 40, 868 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 637 |
| PdmI | GAANNNNTTC | 1 cut(s) | 117 |
| PfeI | GAWTC | 4 cut(s) | 727, 1000, 1022, 1079 |
| PinAI | ACCGGT | 1 cut(s) | 444 |
| PkrI | GCNGC | 3 cut(s) | 297, 387, 832 |
| PleI | GAGTC | 2 cut(s) | 568, 873 |
| PpsI | GAGTC | 2 cut(s) | 568, 873 |
| Ppu21I | YACGTR | 1 cut(s) | 150 |
| Psp124BI | GAGCTC | 1 cut(s) | 40 |
| PspEI | GGTNACC | 1 cut(s) | 668 |
| PspPI | GGNCC | 1 cut(s) | 336 |
| RsaI | GTAC | 2 cut(s) | 196, 859 |
| RsaNI | GTAC | 2 cut(s) | 195, 858 |
| RseI | CAYNNNNRTG | 3 cut(s) | 447, 504, 1049 |
| SacI | GAGCTC | 1 cut(s) | 40 |
| SaqAI | TTAA | 9 cut(s) | 233, 245, 312, 324, 473, 554, 978, 1068, 1110 |
| SatI | GCNGC | 3 cut(s) | 296, 386, 831 |
| Sau3AI | GATC | 4 cut(s) | 217, 625, 641, 1012 |
| Sau96I | GGNCC | 1 cut(s) | 336 |
| ScaI | AGTACT | 1 cut(s) | 859 |
| SchI | GAGTC | 2 cut(s) | 569, 874 |
| ScrFI | CCNGG | 1 cut(s) | 674 |
| SduI | GDGCHC | 4 cut(s) | 40, 61, 157, 492 |
| SfaNI | GCATC | 5 cut(s) | 13, 445, 676, 781, 838 |
| SgrAI | CRCCGGYG | 1 cut(s) | 444 |
| SinI | GGWCC | 1 cut(s) | 336 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 447, 504, 1049 |
| Sse9I | AATT | 9 cut(s) | 86, 117, 223, 317, 418, 822, 960, 979, 1107 |
| SsiI | CCGC | 2 cut(s) | 26, 1236 |
| SstI | GAGCTC | 1 cut(s) | 40 |
| StyD4I | CCNGG | 1 cut(s) | 672 |
| StyI | CCWWGG | 1 cut(s) | 955 |
| TaaI | ACNGT | 2 cut(s) | 305, 1035 |
| TaiI | ACGT | 3 cut(s) | 152, 610, 634 |
| TaqI | TCGA | 3 cut(s) | 634, 725, 1189 |
| TasI | AATT | 9 cut(s) | 86, 117, 223, 317, 418, 822, 960, 979, 1107 |
| TatI | WGTACW | 2 cut(s) | 194, 857 |
| TfiI | GAWTC | 4 cut(s) | 727, 1000, 1022, 1079 |
| Tru1I | TTAA | 9 cut(s) | 233, 245, 312, 324, 473, 554, 978, 1068, 1110 |
| Tru9I | TTAA | 9 cut(s) | 233, 245, 312, 324, 473, 554, 978, 1068, 1110 |
| TscAI | CASTG | 3 cut(s) | 310, 886, 1046 |
| TseFI | GTSAC | 1 cut(s) | 668 |
| TseI | GCWGC | 3 cut(s) | 295, 385, 830 |
| Tsp45I | GTSAC | 1 cut(s) | 668 |
| TspDTI | ATGAA | 6 cut(s) | 110, 216, 552, 834, 1151, 1175 |
| TspRI | CASTG | 3 cut(s) | 310, 886, 1046 |
| VpaK11BI | GGWCC | 1 cut(s) | 336 |
| XapI | RAATTY | 3 cut(s) | 86, 317, 822 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XmnI | GAANNNNTTC | 1 cut(s) | 117 |
| ZrmI | AGTACT | 1 cut(s) | 859 |