Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 85 |
| AccII | CGCG | 1 cut(s) | 116 |
| AciI | CCGC | 4 cut(s) | 152, 160, 176, 445 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 17, 85, 147, 148 |
| AgsI | TTSAA | 1 cut(s) | 278 |
| AluBI | AGCT | 4 cut(s) | 122, 269, 326, 356 |
| AluI | AGCT | 4 cut(s) | 122, 269, 326, 356 |
| Alw26I | GTCTC | 2 cut(s) | 177, 212 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 85, 329 |
| Ama87I | CYCGRG | 2 cut(s) | 141, 147 |
| AoxI | GGCC | 1 cut(s) | 236 |
| ApeKI | GCWGC | 3 cut(s) | 111, 323, 326 |
| AspLEI | GCGC | 3 cut(s) | 111, 116, 431 |
| AsuC2I | CCSGG | 2 cut(s) | 142, 143 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AvaI | CYCGRG | 2 cut(s) | 141, 147 |
| BanII | GRGCYC | 1 cut(s) | 148 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 273, 305 |
| BauI | CACGAG | 1 cut(s) | 209 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BbvI | GCAGC | 3 cut(s) | 123, 313, 335 |
| BccI | CCATC | 2 cut(s) | 326, 370 |
| BcnI | CCSGG | 2 cut(s) | 142, 143 |
| BcoDI | GTCTC | 2 cut(s) | 177, 212 |
| BfaI | CTAG | 2 cut(s) | 192, 266 |
| BfoI | RGCGCY | 1 cut(s) | 432 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 164 |
| BisI | GCNGC | 4 cut(s) | 112, 324, 327, 445 |
| BlsI | GCNGC | 4 cut(s) | 113, 325, 328, 446 |
| Bme1390I | CCNGG | 2 cut(s) | 142, 143 |
| BmeT110I | CYCGRG | 2 cut(s) | 141, 147 |
| BmiI | GGNNCC | 1 cut(s) | 90 |
| BmrFI | CCNGG | 2 cut(s) | 142, 143 |
| BmsI | GCATC | 2 cut(s) | 87, 409 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BpmI | CTGGAG | 1 cut(s) | 107 |
| BpuMI | CCSGG | 2 cut(s) | 142, 143 |
| BsaAI | YACGTR | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 4 cut(s) | 104, 141, 233, 251 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 17, 85, 147, 148 |
| Bse3DI | GCAATG | 1 cut(s) | 292 |
| BseDI | CCNNGG | 4 cut(s) | 104, 141, 233, 251 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 17, 85, 147, 148 |
| BseMI | GCAATG | 1 cut(s) | 292 |
| BseRI | GAGGAG | 1 cut(s) | 38 |
| BseXI | GCAGC | 3 cut(s) | 123, 313, 335 |
| BseYI | CCCAGC | 1 cut(s) | 78 |
| Bsh1236I | CGCG | 1 cut(s) | 116 |
| BshFI | GGCC | 1 cut(s) | 238 |
| BsiHKCI | CYCGRG | 2 cut(s) | 141, 147 |
| BsiSI | CCGG | 1 cut(s) | 142 |
| BslFI | GGGAC | 2 cut(s) | 72, 212 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 17, 85, 147, 148 |
| BsmAI | GTCTC | 2 cut(s) | 177, 212 |
| BsmFI | GGGAC | 2 cut(s) | 72, 212 |
| BsnI | GGCC | 1 cut(s) | 238 |
| BsoBI | CYCGRG | 2 cut(s) | 141, 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 148 |
| Bsp143I | GATC | 2 cut(s) | 34, 126 |
| BspACI | CCGC | 4 cut(s) | 152, 160, 176, 445 |
| BspANI | GGCC | 1 cut(s) | 238 |
| BspFNI | CGCG | 1 cut(s) | 116 |
| BspLI | GGNNCC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 1 cut(s) | 292 |
| BssECI | CCNNGG | 4 cut(s) | 104, 141, 233, 251 |
| BssMI | GATC | 2 cut(s) | 34, 126 |
| BssSI | CACGAG | 1 cut(s) | 209 |
| BssT1I | CCWWGG | 3 cut(s) | 104, 233, 251 |
| Bst2BI | CACGAG | 1 cut(s) | 209 |
| BstBAI | YACGTR | 1 cut(s) | 416 |
| BstC8I | GCNNGC | 1 cut(s) | 160 |
| BstDEI | CTNAG | 1 cut(s) | 308 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 15 |
| BstFNI | CGCG | 1 cut(s) | 116 |
| BstH2I | RGCGCY | 1 cut(s) | 432 |
| BstHHI | GCGC | 3 cut(s) | 111, 116, 431 |
| BstKTI | GATC | 2 cut(s) | 37, 129 |
| BstMAI | GTCTC | 2 cut(s) | 177, 212 |
| BstMBI | GATC | 2 cut(s) | 34, 126 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 88, 97, 106, 164, 428 |
| BstSCI | CCNGG | 2 cut(s) | 140, 141 |
| BstUI | CGCG | 1 cut(s) | 116 |
| BstV1I | GCAGC | 3 cut(s) | 123, 313, 335 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 1 cut(s) | 160 |
| CaiI | CAGNNNCTG | 2 cut(s) | 85, 329 |
| CfoI | GCGC | 3 cut(s) | 111, 116, 431 |
| Cfr9I | CCCGGG | 1 cut(s) | 141 |
| CseI | GACGC | 1 cut(s) | 71 |
| CviAII | CATG | 1 cut(s) | 302 |
| DdeI | CTNAG | 1 cut(s) | 308 |
| DpnI | GATC | 2 cut(s) | 36, 128 |
| DpnII | GATC | 2 cut(s) | 34, 126 |
| Eco130I | CCWWGG | 3 cut(s) | 104, 233, 251 |
| Eco24I | GRGCYC | 1 cut(s) | 148 |
| Eco88I | CYCGRG | 2 cut(s) | 141, 147 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 15 |
| EcoT14I | CCWWGG | 3 cut(s) | 104, 233, 251 |
| EcoT38I | GRGCYC | 1 cut(s) | 148 |
| ErhI | CCWWGG | 3 cut(s) | 104, 233, 251 |
| FaeI | CATG | 1 cut(s) | 305 |
| FaiI | YATR | 4 cut(s) | 17, 242, 303, 438 |
| FaqI | GGGAC | 2 cut(s) | 72, 212 |
| FatI | CATG | 1 cut(s) | 301 |
| FauI | CCCGC | 1 cut(s) | 167 |
| Fnu4HI | GCNGC | 4 cut(s) | 112, 324, 327, 445 |
| FriOI | GRGCYC | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 4 cut(s) | 112, 324, 327, 445 |
| FspBI | CTAG | 2 cut(s) | 192, 266 |
| GlaI | GCGC | 3 cut(s) | 110, 115, 430 |
| GluI | GCNGC | 4 cut(s) | 112, 324, 327, 445 |
| GsaI | CCCAGC | 1 cut(s) | 82 |
| GsuI | CTGGAG | 1 cut(s) | 107 |
| HaeII | RGCGCY | 1 cut(s) | 432 |
| HaeIII | GGCC | 1 cut(s) | 238 |
| HapII | CCGG | 1 cut(s) | 142 |
| HgaI | GACGC | 1 cut(s) | 71 |
| HhaI | GCGC | 3 cut(s) | 111, 116, 431 |
| Hin1II | CATG | 1 cut(s) | 305 |
| Hin6I | GCGC | 3 cut(s) | 109, 114, 429 |
| HinP1I | GCGC | 3 cut(s) | 109, 114, 429 |
| HinfI | GANTC | 3 cut(s) | 185, 246, 397 |
| HpaII | CCGG | 1 cut(s) | 142 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| HpyAV | CCTTC | 1 cut(s) | 22 |
| HpyCH4IV | ACGT | 1 cut(s) | 415 |
| HpyCH4V | TGCA | 2 cut(s) | 286, 323 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 88, 97, 106, 164, 428 |
| HpyF3I | CTNAG | 1 cut(s) | 308 |
| HpySE526I | ACGT | 1 cut(s) | 415 |
| Hsp92II | CATG | 1 cut(s) | 305 |
| HspAI | GCGC | 3 cut(s) | 109, 114, 429 |
| Kzo9I | GATC | 2 cut(s) | 34, 126 |
| LmnI | GCTCC | 1 cut(s) | 88 |
| LpnPI | CCDG | 5 cut(s) | 71, 92, 115, 155, 411 |
| Lsp1109I | GCAGC | 3 cut(s) | 123, 313, 335 |
| LweI | GCATC | 2 cut(s) | 87, 409 |
| MaeI | CTAG | 2 cut(s) | 192, 266 |
| MaeII | ACGT | 1 cut(s) | 415 |
| MaeIII | GTNAC | 1 cut(s) | 411 |
| MalI | GATC | 2 cut(s) | 36, 128 |
| MboI | GATC | 2 cut(s) | 34, 126 |
| MboII | GAAGA | 3 cut(s) | 29, 32, 266 |
| MfeI | CAATTG | 1 cut(s) | 202 |
| MhlI | GDGCHC | 1 cut(s) | 148 |
| MluCI | AATT | 2 cut(s) | 202, 259 |
| MnlI | CCTC | 5 cut(s) | 16, 102, 240, 307, 396 |
| MspA1I | CMGCKG | 1 cut(s) | 326 |
| MspI | CCGG | 1 cut(s) | 142 |
| MspR9I | CCNGG | 2 cut(s) | 142, 143 |
| MteI | GCGCNGCGC | 1 cut(s) | 112 |
| MunI | CAATTG | 1 cut(s) | 202 |
| MvnI | CGCG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 88, 97, 106, 164, 428 |
| NciI | CCSGG | 2 cut(s) | 142, 143 |
| NdeII | GATC | 2 cut(s) | 34, 126 |
| NlaIII | CATG | 1 cut(s) | 305 |
| NlaIV | GGNNCC | 1 cut(s) | 90 |
| PfeI | GAWTC | 3 cut(s) | 185, 246, 397 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 85 |
| PkrI | GCNGC | 4 cut(s) | 113, 325, 328, 446 |
| Ppu21I | YACGTR | 1 cut(s) | 416 |
| PspFI | CCCAGC | 1 cut(s) | 78 |
| PspN4I | GGNNCC | 1 cut(s) | 90 |
| PstNI | CAGNNNCTG | 2 cut(s) | 85, 329 |
| PvuII | CAGCTG | 1 cut(s) | 326 |
| SatI | GCNGC | 4 cut(s) | 112, 324, 327, 445 |
| Sau3AI | GATC | 2 cut(s) | 34, 126 |
| ScrFI | CCNGG | 2 cut(s) | 142, 143 |
| SduI | GDGCHC | 1 cut(s) | 148 |
| SfaNI | GCATC | 2 cut(s) | 87, 409 |
| SmaI | CCCGGG | 1 cut(s) | 143 |
| Sse9I | AATT | 2 cut(s) | 202, 259 |
| SsiI | CCGC | 4 cut(s) | 152, 160, 176, 445 |
| SspMI | CTAG | 2 cut(s) | 192, 266 |
| StyD4I | CCNGG | 2 cut(s) | 140, 141 |
| StyI | CCWWGG | 3 cut(s) | 104, 233, 251 |
| TaiI | ACGT | 1 cut(s) | 418 |
| TaqI | TCGA | 2 cut(s) | 51, 72 |
| TasI | AATT | 2 cut(s) | 202, 259 |
| TauI | GCSGC | 1 cut(s) | 447 |
| TfiI | GAWTC | 3 cut(s) | 185, 246, 397 |
| TseI | GCWGC | 3 cut(s) | 111, 323, 326 |
| TspDTI | ATGAA | 1 cut(s) | 281 |
| TspMI | CCCGGG | 1 cut(s) | 141 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 85 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 15 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 369 |
| XmaI | CCCGGG | 1 cut(s) | 141 |
| XspI | CTAG | 2 cut(s) | 192, 266 |