ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1048 |
| AccI | GTMKAC | 1 cut(s) | 42 |
| AccII | CGCG | 3 cut(s) | 745, 841, 1131 |
| AciI | CCGC | 2 cut(s) | 743, 944 |
| AclWI | GGATC | 1 cut(s) | 806 |
| AcsI | RAATTY | 3 cut(s) | 254, 711, 1105 |
| AcuI | CTGAAG | 4 cut(s) | 207, 476, 540, 660 |
| AfaI | GTAC | 2 cut(s) | 309, 363 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 791, 922 |
| AflIII | ACRYGT | 2 cut(s) | 734, 988 |
| AgsI | TTSAA | 6 cut(s) | 656, 696, 701, 718, 962, 1070 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 510, 738 |
| AjiI | CACGTC | 1 cut(s) | 1173 |
| AleI | CACNNNNGTG | 1 cut(s) | 557 |
| Alw26I | GTCTC | 1 cut(s) | 1041 |
| AlwI | GGATC | 1 cut(s) | 806 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 23 |
| AoxI | GGCC | 2 cut(s) | 591, 679 |
| ApeKI | GCWGC | 4 cut(s) | 461, 516, 929, 1057 |
| ApoI | RAATTY | 3 cut(s) | 254, 711, 1105 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 130, 162 |
| AspLEI | GCGC | 2 cut(s) | 210, 841 |
| AspS9I | GGNCC | 2 cut(s) | 127, 156 |
| AsuHPI | GGTGA | 1 cut(s) | 781 |
| AsuNHI | GCTAGC | 1 cut(s) | 662 |
| AvaII | GGWCC | 2 cut(s) | 127, 156 |
| BanI | GGYRCC | 1 cut(s) | 1048 |
| BbsI | GAAGAC | 1 cut(s) | 1167 |
| BbvI | GCAGC | 4 cut(s) | 448, 528, 941, 1069 |
| BccI | CCATC | 2 cut(s) | 139, 809 |
| BceAI | ACGGC | 1 cut(s) | 651 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BcoDI | GTCTC | 1 cut(s) | 1041 |
| BfaI | CTAG | 5 cut(s) | 354, 582, 638, 663, 965 |
| BfmI | CTRYAG | 2 cut(s) | 24, 618 |
| BglII | AGATCT | 1 cut(s) | 703 |
| BisI | GCNGC | 4 cut(s) | 462, 517, 930, 1058 |
| BlsI | GCNGC | 4 cut(s) | 463, 518, 931, 1059 |
| BmcAI | AGTACT | 1 cut(s) | 309 |
| Bme18I | GGWCC | 2 cut(s) | 127, 156 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 510, 738 |
| BmgBI | CACGTC | 1 cut(s) | 1173 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 156 |
| BmiI | GGNNCC | 3 cut(s) | 129, 569, 1050 |
| BmsI | GCATC | 2 cut(s) | 787, 1141 |
| BmtI | GCTAGC | 1 cut(s) | 666 |
| BpiI | GAAGAC | 1 cut(s) | 1167 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| Bpu10I | CCTNAGC | 2 cut(s) | 346, 1156 |
| BsaBI | GATNNNNATC | 1 cut(s) | 803 |
| BsaI | GGTCTC | 1 cut(s) | 1041 |
| BsaJI | CCNNGG | 1 cut(s) | 1052 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 791, 922 |
| Bse3DI | GCAATG | 2 cut(s) | 65, 117 |
| Bse8I | GATNNNNATC | 1 cut(s) | 803 |
| BseDI | CCNNGG | 1 cut(s) | 1052 |
| BseGI | GGATG | 3 cut(s) | 131, 778, 912 |
| BseJI | GATNNNNATC | 1 cut(s) | 803 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 791, 922 |
| BseMI | GCAATG | 2 cut(s) | 65, 117 |
| BseMII | CTCAG | 2 cut(s) | 30, 825 |
| BseXI | GCAGC | 4 cut(s) | 448, 528, 941, 1069 |
| BsgI | GTGCAG | 1 cut(s) | 652 |
| Bsh1236I | CGCG | 3 cut(s) | 745, 841, 1131 |
| BshFI | GGCC | 2 cut(s) | 593, 681 |
| BshNI | GGYRCC | 1 cut(s) | 1048 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 791, 922 |
| BsmAI | GTCTC | 1 cut(s) | 1041 |
| BsnI | GGCC | 2 cut(s) | 593, 681 |
| Bso31I | GGTCTC | 1 cut(s) | 1041 |
| Bsp143I | GATC | 4 cut(s) | 47, 703, 798, 804 |
| Bsp68I | TCGCGA | 1 cut(s) | 1131 |
| BspACI | CCGC | 2 cut(s) | 743, 944 |
| BspANI | GGCC | 2 cut(s) | 593, 681 |
| BspCNI | CTCAG | 2 cut(s) | 29, 824 |
| BspFNI | CGCG | 3 cut(s) | 745, 841, 1131 |
| BspLI | GGNNCC | 3 cut(s) | 129, 569, 1050 |
| BspOI | GCTAGC | 1 cut(s) | 666 |
| BspPI | GGATC | 1 cut(s) | 806 |
| BspT107I | GGYRCC | 1 cut(s) | 1048 |
| BspTNI | GGTCTC | 1 cut(s) | 1041 |
| BsrDI | GCAATG | 2 cut(s) | 65, 117 |
| BssECI | CCNNGG | 1 cut(s) | 1052 |
| BssMI | GATC | 4 cut(s) | 47, 703, 798, 804 |
| BssT1I | CCWWGG | 1 cut(s) | 1052 |
| Bst4CI | ACNGT | 1 cut(s) | 619 |
| Bst6I | CTCTTC | 1 cut(s) | 166 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 7 cut(s) | 176, 212, 459, 547, 579, 635, 664 |
| BstDEI | CTNAG | 4 cut(s) | 16, 346, 811, 1156 |
| BstF5I | GGATG | 3 cut(s) | 131, 778, 912 |
| BstFNI | CGCG | 3 cut(s) | 745, 841, 1131 |
| BstHHI | GCGC | 2 cut(s) | 210, 841 |
| BstKTI | GATC | 4 cut(s) | 50, 706, 801, 807 |
| BstMAI | GTCTC | 1 cut(s) | 1041 |
| BstMBI | GATC | 4 cut(s) | 47, 703, 798, 804 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 191, 1057 |
| BstNSI | RCATGY | 6 cut(s) | 490, 549, 581, 688, 738, 992 |
| BstSFI | CTRYAG | 2 cut(s) | 24, 618 |
| BstUI | CGCG | 3 cut(s) | 745, 841, 1131 |
| BstV1I | GCAGC | 4 cut(s) | 448, 528, 941, 1069 |
| BstV2I | GAAGAC | 1 cut(s) | 1167 |
| BstX2I | RGATCY | 1 cut(s) | 703 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 703 |
| BsuRI | GGCC | 2 cut(s) | 593, 681 |
| BtrI | CACGTC | 1 cut(s) | 1173 |
| BtsCI | GGATG | 3 cut(s) | 131, 778, 912 |
| BtsIMutI | CAGTG | 1 cut(s) | 564 |
| BtuMI | TCGCGA | 1 cut(s) | 1131 |
| Cac8I | GCNNGC | 7 cut(s) | 176, 212, 459, 547, 579, 635, 664 |
| CaiI | CAGNNNCTG | 1 cut(s) | 23 |
| CfoI | GCGC | 2 cut(s) | 210, 841 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 156 |
| CseI | GACGC | 1 cut(s) | 734 |
| Csp6I | GTAC | 2 cut(s) | 308, 362 |
| CviQI | GTAC | 2 cut(s) | 308, 362 |
| DdeI | CTNAG | 4 cut(s) | 16, 346, 811, 1156 |
| DpnI | GATC | 4 cut(s) | 49, 705, 800, 806 |
| DpnII | GATC | 4 cut(s) | 47, 703, 798, 804 |
| DriI | GACNNNNNGTC | 2 cut(s) | 510, 738 |
| Eam1104I | CTCTTC | 1 cut(s) | 166 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 510, 738 |
| EarI | CTCTTC | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 1 cut(s) | 1052 |
| Eco31I | GGTCTC | 1 cut(s) | 1041 |
| Eco47I | GGWCC | 2 cut(s) | 127, 156 |
| Eco57I | CTGAAG | 4 cut(s) | 207, 476, 540, 660 |
| EcoT14I | CCWWGG | 1 cut(s) | 1052 |
| ErhI | CCWWGG | 1 cut(s) | 1052 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 397, 429 |
| FblI | GTMKAC | 1 cut(s) | 42 |
| Fnu4HI | GCNGC | 4 cut(s) | 462, 517, 930, 1058 |
| FokI | GGATG | 3 cut(s) | 118, 765, 899 |
| Fsp4HI | GCNGC | 4 cut(s) | 462, 517, 930, 1058 |
| FspBI | CTAG | 5 cut(s) | 354, 582, 638, 663, 965 |
| GlaI | GCGC | 2 cut(s) | 209, 840 |
| GluI | GCNGC | 4 cut(s) | 462, 517, 930, 1058 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeIII | GGCC | 2 cut(s) | 593, 681 |
| HgaI | GACGC | 1 cut(s) | 734 |
| HhaI | GCGC | 2 cut(s) | 210, 841 |
| Hin6I | GCGC | 2 cut(s) | 208, 839 |
| HinP1I | GCGC | 2 cut(s) | 208, 839 |
| HincII | GTYRAC | 1 cut(s) | 282 |
| HindII | GTYRAC | 1 cut(s) | 282 |
| HinfI | GANTC | 5 cut(s) | 383, 391, 833, 1007, 1138 |
| HphI | GGTGA | 1 cut(s) | 781 |
| Hpy166II | GTNNAC | 3 cut(s) | 43, 282, 362 |
| Hpy188I | TCNGA | 3 cut(s) | 372, 710, 814 |
| Hpy188III | TCNNGA | 6 cut(s) | 354, 701, 802, 866, 1022, 1130 |
| Hpy8I | GTNNAC | 3 cut(s) | 43, 282, 362 |
| HpyAV | CCTTC | 6 cut(s) | 225, 231, 283, 367, 1050, 1127 |
| HpyCH4III | ACNGT | 1 cut(s) | 619 |
| HpyCH4IV | ACGT | 1 cut(s) | 1172 |
| HpyCH4V | TGCA | 5 cut(s) | 185, 328, 633, 688, 929 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 191, 1057 |
| HpyF3I | CTNAG | 4 cut(s) | 16, 346, 811, 1156 |
| HpySE526I | ACGT | 1 cut(s) | 1172 |
| HspAI | GCGC | 2 cut(s) | 208, 839 |
| Kzo9I | GATC | 4 cut(s) | 47, 703, 798, 804 |
| LmnI | GCTCC | 5 cut(s) | 75, 432, 469, 757, 818 |
| Lsp1109I | GCAGC | 4 cut(s) | 448, 528, 941, 1069 |
| LweI | GCATC | 2 cut(s) | 787, 1141 |
| MaeI | CTAG | 5 cut(s) | 354, 582, 638, 663, 965 |
| MaeII | ACGT | 1 cut(s) | 1172 |
| MaeIII | GTNAC | 3 cut(s) | 314, 392, 730 |
| MalI | GATC | 4 cut(s) | 49, 705, 800, 806 |
| MboI | GATC | 4 cut(s) | 47, 703, 798, 804 |
| MboII | GAAGA | 5 cut(s) | 153, 249, 287, 1002, 1167 |
| MflI | RGATCY | 1 cut(s) | 703 |
| MlyI | GAGTC | 1 cut(s) | 400 |
| MmeI | TCCRAC | 2 cut(s) | 350, 477 |
| MseI | TTAA | 1 cut(s) | 527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MvnI | CGCG | 3 cut(s) | 745, 841, 1131 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 191, 1057 |
| NdeII | GATC | 4 cut(s) | 47, 703, 798, 804 |
| NheI | GCTAGC | 1 cut(s) | 662 |
| NlaIV | GGNNCC | 3 cut(s) | 129, 569, 1050 |
| NmuCI | GTSAC | 3 cut(s) | 314, 392, 730 |
| NruI | TCGCGA | 1 cut(s) | 1131 |
| NspI | RCATGY | 6 cut(s) | 490, 549, 581, 688, 738, 992 |
| OliI | CACNNNNGTG | 1 cut(s) | 557 |
| PaeI | GCATGC | 2 cut(s) | 549, 581 |
| PciI | ACATGT | 2 cut(s) | 734, 988 |
| PfeI | GAWTC | 4 cut(s) | 383, 833, 1007, 1138 |
| PkrI | GCNGC | 4 cut(s) | 463, 518, 931, 1059 |
| PleI | GAGTC | 1 cut(s) | 399 |
| PpsI | GAGTC | 1 cut(s) | 399 |
| PscI | ACATGT | 2 cut(s) | 734, 988 |
| PspN4I | GGNNCC | 3 cut(s) | 129, 569, 1050 |
| PspPI | GGNCC | 2 cut(s) | 127, 156 |
| PstNI | CAGNNNCTG | 1 cut(s) | 23 |
| PsuI | RGATCY | 1 cut(s) | 703 |
| RruI | TCGCGA | 1 cut(s) | 1131 |
| RsaI | GTAC | 2 cut(s) | 309, 363 |
| RsaNI | GTAC | 2 cut(s) | 308, 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SaqAI | TTAA | 1 cut(s) | 527 |
| SatI | GCNGC | 4 cut(s) | 462, 517, 930, 1058 |
| Sau3AI | GATC | 4 cut(s) | 47, 703, 798, 804 |
| Sau96I | GGNCC | 2 cut(s) | 127, 156 |
| ScaI | AGTACT | 1 cut(s) | 309 |
| SchI | GAGTC | 1 cut(s) | 400 |
| SfaNI | GCATC | 2 cut(s) | 787, 1141 |
| SfcI | CTRYAG | 2 cut(s) | 24, 618 |
| SinI | GGWCC | 2 cut(s) | 127, 156 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SphI | GCATGC | 2 cut(s) | 549, 581 |
| SsiI | CCGC | 2 cut(s) | 743, 944 |
| SspMI | CTAG | 5 cut(s) | 354, 582, 638, 663, 965 |
| StyI | CCWWGG | 1 cut(s) | 1052 |
| TaaI | ACNGT | 1 cut(s) | 619 |
| TaiI | ACGT | 1 cut(s) | 1175 |
| TaqI | TCGA | 2 cut(s) | 251, 304 |
| TatI | WGTACW | 2 cut(s) | 307, 361 |
| TfiI | GAWTC | 4 cut(s) | 383, 833, 1007, 1138 |
| Tru1I | TTAA | 1 cut(s) | 527 |
| Tru9I | TTAA | 1 cut(s) | 527 |
| TscAI | CASTG | 1 cut(s) | 564 |
| TseFI | GTSAC | 3 cut(s) | 314, 392, 730 |
| TseI | GCWGC | 4 cut(s) | 461, 516, 929, 1057 |
| Tsp45I | GTSAC | 3 cut(s) | 314, 392, 730 |
| TspDTI | ATGAA | 5 cut(s) | 68, 313, 1100, 1104, 1118 |
| TspRI | CASTG | 1 cut(s) | 564 |
| VpaK11BI | GGWCC | 2 cut(s) | 127, 156 |
| XapI | RAATTY | 3 cut(s) | 254, 711, 1105 |
| XbaI | TCTAGA | 1 cut(s) | 353 |
| XceI | RCATGY | 6 cut(s) | 490, 549, 581, 688, 738, 992 |
| XmiI | GTMKAC | 1 cut(s) | 42 |
| XspI | CTAG | 5 cut(s) | 354, 582, 638, 663, 965 |
| ZrmI | AGTACT | 1 cut(s) | 309 |