ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 401 |
| AcsI | RAATTY | 2 cut(s) | 32, 220 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AfaI | GTAC | 2 cut(s) | 96, 278 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 355 |
| AflII | CTTAAG | 1 cut(s) | 272 |
| AgsI | TTSAA | 3 cut(s) | 12, 172, 332 |
| AjnI | CCWGG | 1 cut(s) | 426 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 140, 172 |
| AluBI | AGCT | 4 cut(s) | 140, 265, 300, 382 |
| AluI | AGCT | 4 cut(s) | 140, 265, 300, 382 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| AlwI | GGATC | 1 cut(s) | 401 |
| AoxI | GGCC | 2 cut(s) | 79, 397 |
| ApeKI | GCWGC | 1 cut(s) | 226 |
| ApoI | RAATTY | 2 cut(s) | 32, 220 |
| AspS9I | GGNCC | 2 cut(s) | 80, 193 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| BanII | GRGCYC | 1 cut(s) | 121 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BccI | CCATC | 2 cut(s) | 163, 280 |
| BciT130I | CCWGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BfaI | CTAG | 1 cut(s) | 445 |
| BfrI | CTTAAG | 1 cut(s) | 272 |
| BglII | AGATCT | 1 cut(s) | 316 |
| BisI | GCNGC | 1 cut(s) | 227 |
| BlsI | GCNGC | 1 cut(s) | 228 |
| BmcAI | AGTACT | 1 cut(s) | 278 |
| Bme1390I | CCNGG | 1 cut(s) | 428 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 2 cut(s) | 80, 193 |
| BmiI | GGNNCC | 2 cut(s) | 82, 120 |
| BmrFI | CCNGG | 1 cut(s) | 428 |
| Bpu10I | CCTNAGC | 1 cut(s) | 266 |
| BpuEI | CTTGAG | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 2 cut(s) | 426, 427 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 347, 377 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 355 |
| BseBI | CCWGG | 1 cut(s) | 428 |
| BseDI | CCNNGG | 2 cut(s) | 426, 427 |
| BseGI | GGATG | 4 cut(s) | 34, 155, 382, 440 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 355 |
| BseRI | GAGGAG | 2 cut(s) | 368, 371 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 2 cut(s) | 81, 399 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 355 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsmI | GAATGC | 1 cut(s) | 436 |
| BsnI | GGCC | 2 cut(s) | 81, 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 121 |
| Bsp143I | GATC | 2 cut(s) | 316, 406 |
| BspANI | GGCC | 2 cut(s) | 81, 399 |
| BspLI | GGNNCC | 2 cut(s) | 82, 120 |
| BspPI | GGATC | 1 cut(s) | 401 |
| BspTI | CTTAAG | 1 cut(s) | 272 |
| BssECI | CCNNGG | 2 cut(s) | 426, 427 |
| BssMI | GATC | 2 cut(s) | 316, 406 |
| Bst2UI | CCWGG | 1 cut(s) | 428 |
| Bst4CI | ACNGT | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 167, 288 |
| BstAFI | CTTAAG | 1 cut(s) | 272 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 353 |
| BstF5I | GGATG | 4 cut(s) | 34, 155, 382, 440 |
| BstKTI | GATC | 2 cut(s) | 319, 409 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 2 cut(s) | 316, 406 |
| BstNI | CCWGG | 1 cut(s) | 428 |
| BstSCI | CCNGG | 1 cut(s) | 426 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 316 |
| BstYI | RGATCY | 1 cut(s) | 316 |
| BsuRI | GGCC | 2 cut(s) | 81, 399 |
| BtsCI | GGATG | 4 cut(s) | 34, 155, 382, 440 |
| BtsI | GCAGTG | 1 cut(s) | 312 |
| BtsIMutI | CAGTG | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 2 cut(s) | 80, 193 |
| Csp6I | GTAC | 2 cut(s) | 95, 277 |
| CviJI | RGCY | 8 cut(s) | 81, 119, 140, 265, 271, 300, 382, 399 |
| CviKI_1 | RGCY | 8 cut(s) | 81, 119, 140, 265, 271, 300, 382, 399 |
| CviQI | GTAC | 2 cut(s) | 95, 277 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 2 cut(s) | 318, 408 |
| DpnII | GATC | 2 cut(s) | 316, 406 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 167, 288 |
| EarI | CTCTTC | 3 cut(s) | 132, 167, 288 |
| Eco147I | AGGCCT | 1 cut(s) | 399 |
| Eco24I | GRGCYC | 1 cut(s) | 121 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 353 |
| EcoO109I | RGGNCCY | 1 cut(s) | 80 |
| EcoRII | CCWGG | 1 cut(s) | 426 |
| EcoT38I | GRGCYC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 1 cut(s) | 227 |
| FokI | GGATG | 4 cut(s) | 41, 142, 389, 427 |
| FriOI | GRGCYC | 1 cut(s) | 121 |
| Fsp4HI | GCNGC | 1 cut(s) | 227 |
| FspBI | CTAG | 1 cut(s) | 445 |
| GluI | GCNGC | 1 cut(s) | 227 |
| HaeIII | GGCC | 2 cut(s) | 81, 399 |
| HinfI | GANTC | 4 cut(s) | 8, 16, 40, 233 |
| Hpy188I | TCNGA | 2 cut(s) | 28, 415 |
| Hpy188III | TCNNGA | 1 cut(s) | 246 |
| HpyAV | CCTTC | 3 cut(s) | 132, 389, 420 |
| HpyCH4III | ACNGT | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 305, 368, 421, 436 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| Kzo9I | GATC | 2 cut(s) | 316, 406 |
| LmnI | GCTCC | 1 cut(s) | 124 |
| LpnPI | CCDG | 9 cut(s) | 77, 86, 126, 209, 216, 231, 243, 413, 440 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| MaeI | CTAG | 1 cut(s) | 445 |
| MaeIII | GTNAC | 1 cut(s) | 48 |
| MalI | GATC | 2 cut(s) | 318, 408 |
| MboI | GATC | 2 cut(s) | 316, 406 |
| MboII | GAAGA | 7 cut(s) | 67, 70, 119, 184, 231, 305, 344 |
| MflI | RGATCY | 1 cut(s) | 316 |
| MhlI | GDGCHC | 1 cut(s) | 121 |
| MluCI | AATT | 2 cut(s) | 32, 220 |
| MnlI | CCTC | 9 cut(s) | 141, 168, 201, 283, 319, 331, 346, 349, 410 |
| MseI | TTAA | 2 cut(s) | 273, 342 |
| MspCI | CTTAAG | 1 cut(s) | 272 |
| MspR9I | CCNGG | 1 cut(s) | 428 |
| Mva1269I | GAATGC | 1 cut(s) | 436 |
| MvaI | CCWGG | 1 cut(s) | 428 |
| NdeII | GATC | 2 cut(s) | 316, 406 |
| NlaIV | GGNNCC | 2 cut(s) | 82, 120 |
| NmuCI | GTSAC | 1 cut(s) | 48 |
| PasI | CCCWGGG | 1 cut(s) | 427 |
| PceI | AGGCCT | 1 cut(s) | 399 |
| PctI | GAATGC | 1 cut(s) | 436 |
| PfeI | GAWTC | 4 cut(s) | 8, 16, 40, 233 |
| PkrI | GCNGC | 1 cut(s) | 228 |
| Psp6I | CCWGG | 1 cut(s) | 426 |
| PspGI | CCWGG | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 2 cut(s) | 82, 120 |
| PspPI | GGNCC | 2 cut(s) | 80, 193 |
| PsuI | RGATCY | 1 cut(s) | 316 |
| RsaI | GTAC | 2 cut(s) | 96, 278 |
| RsaNI | GTAC | 2 cut(s) | 95, 277 |
| SaqAI | TTAA | 2 cut(s) | 273, 342 |
| SatI | GCNGC | 1 cut(s) | 227 |
| Sau3AI | GATC | 2 cut(s) | 316, 406 |
| Sau96I | GGNCC | 2 cut(s) | 80, 193 |
| ScaI | AGTACT | 1 cut(s) | 278 |
| ScrFI | CCNGG | 1 cut(s) | 428 |
| SduI | GDGCHC | 1 cut(s) | 121 |
| SetI | ASST | 8 cut(s) | 96, 142, 212, 267, 302, 330, 342, 384 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmlI | CTYRAG | 2 cut(s) | 272, 350 |
| SmoI | CTYRAG | 2 cut(s) | 272, 350 |
| Sse9I | AATT | 2 cut(s) | 32, 220 |
| SseBI | AGGCCT | 1 cut(s) | 399 |
| SspMI | CTAG | 1 cut(s) | 445 |
| StuI | AGGCCT | 1 cut(s) | 399 |
| StyD4I | CCNGG | 1 cut(s) | 426 |
| TaaI | ACNGT | 1 cut(s) | 260 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TasI | AATT | 2 cut(s) | 32, 220 |
| TatI | WGTACW | 1 cut(s) | 276 |
| TfiI | GAWTC | 4 cut(s) | 8, 16, 40, 233 |
| Tru1I | TTAA | 2 cut(s) | 273, 342 |
| Tru9I | TTAA | 2 cut(s) | 273, 342 |
| TscAI | CASTG | 1 cut(s) | 312 |
| TseFI | GTSAC | 1 cut(s) | 48 |
| TseI | GCWGC | 1 cut(s) | 226 |
| Tsp45I | GTSAC | 1 cut(s) | 48 |
| TspDTI | ATGAA | 3 cut(s) | 45, 225, 429 |
| TspGWI | ACGGA | 1 cut(s) | 67 |
| TspRI | CASTG | 1 cut(s) | 312 |
| Vha464I | CTTAAG | 1 cut(s) | 272 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 353 |
| XapI | RAATTY | 2 cut(s) | 32, 220 |
| XspI | CTAG | 1 cut(s) | 445 |
| ZrmI | AGTACT | 1 cut(s) | 278 |