ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 196 |
| AccI | GTMKAC | 1 cut(s) | 387 |
| AciI | CCGC | 3 cut(s) | 37, 212, 284 |
| AclI | AACGTT | 1 cut(s) | 117 |
| AclWI | GGATC | 1 cut(s) | 927 |
| AcoI | YGGCCR | 1 cut(s) | 518 |
| AcsI | RAATTY | 5 cut(s) | 261, 371, 590, 822, 1002 |
| AcuI | CTGAAG | 1 cut(s) | 701 |
| AcvI | CACGTG | 1 cut(s) | 944 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 196 |
| AflII | CTTAAG | 1 cut(s) | 749 |
| AflIII | ACRYGT | 1 cut(s) | 941 |
| AgeI | ACCGGT | 1 cut(s) | 977 |
| AgsI | TTSAA | 3 cut(s) | 307, 377, 470 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 226, 258, 699, 731 |
| AluBI | AGCT | 8 cut(s) | 82, 113, 380, 531, 733, 742, 803, 829 |
| AluI | AGCT | 8 cut(s) | 82, 113, 380, 531, 733, 742, 803, 829 |
| Alw21I | GWGCWC | 1 cut(s) | 1015 |
| AlwI | GGATC | 1 cut(s) | 927 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 227 |
| AoxI | GGCC | 2 cut(s) | 281, 518 |
| ApeKI | GCWGC | 3 cut(s) | 458, 531, 864 |
| ApoI | RAATTY | 5 cut(s) | 261, 371, 590, 822, 1002 |
| AseI | ATTAAT | 1 cut(s) | 290 |
| AsiGI | ACCGGT | 1 cut(s) | 977 |
| AspS9I | GGNCC | 2 cut(s) | 281, 605 |
| AsuHPI | GGTGA | 3 cut(s) | 311, 417, 676 |
| AsuII | TTCGAA | 1 cut(s) | 935 |
| AvaII | GGWCC | 1 cut(s) | 605 |
| BalI | TGGCCA | 1 cut(s) | 520 |
| BanII | GRGCYC | 1 cut(s) | 325 |
| BauI | CACGAG | 1 cut(s) | 804 |
| BbrPI | CACGTG | 1 cut(s) | 944 |
| BbsI | GAAGAC | 2 cut(s) | 672, 924 |
| Bbv12I | GWGCWC | 1 cut(s) | 1015 |
| BbvI | GCAGC | 3 cut(s) | 445, 518, 851 |
| BccI | CCATC | 1 cut(s) | 956 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BfaI | CTAG | 2 cut(s) | 147, 528 |
| BfrI | CTTAAG | 1 cut(s) | 749 |
| BglII | AGATCT | 1 cut(s) | 236 |
| BisI | GCNGC | 5 cut(s) | 213, 284, 459, 532, 865 |
| BlsI | GCNGC | 5 cut(s) | 214, 285, 460, 533, 866 |
| Bme18I | GGWCC | 1 cut(s) | 605 |
| BmgT120I | GGNCC | 2 cut(s) | 281, 605 |
| BmiI | GGNNCC | 2 cut(s) | 282, 606 |
| BmsI | GCATC | 4 cut(s) | 163, 393, 652, 871 |
| BpiI | GAAGAC | 2 cut(s) | 672, 924 |
| Bpu14I | TTCGAA | 1 cut(s) | 935 |
| BpuEI | CTTGAG | 1 cut(s) | 836 |
| BsaAI | YACGTR | 1 cut(s) | 944 |
| BsaBI | GATNNNNATC | 1 cut(s) | 966 |
| BsaJI | CCNNGG | 2 cut(s) | 190, 503 |
| BsaWI | WCCGGW | 1 cut(s) | 977 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 196 |
| Bse118I | RCCGGY | 1 cut(s) | 977 |
| Bse1I | ACTGG | 2 cut(s) | 201, 629 |
| Bse8I | GATNNNNATC | 1 cut(s) | 966 |
| BseDI | CCNNGG | 2 cut(s) | 190, 503 |
| BseGI | GGATG | 2 cut(s) | 85, 643 |
| BseJI | GATNNNNATC | 1 cut(s) | 966 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BseMII | CTCAG | 1 cut(s) | 662 |
| BseNI | ACTGG | 2 cut(s) | 201, 629 |
| BseXI | GCAGC | 3 cut(s) | 445, 518, 851 |
| Bsh1285I | CGRYCG | 1 cut(s) | 970 |
| BshFI | GGCC | 2 cut(s) | 283, 520 |
| BshTI | ACCGGT | 1 cut(s) | 977 |
| BsiEI | CGRYCG | 1 cut(s) | 970 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1015 |
| BsiSI | CCGG | 1 cut(s) | 978 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 196 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsnI | GGCC | 2 cut(s) | 283, 520 |
| Bsp119I | TTCGAA | 1 cut(s) | 935 |
| Bsp1286I | GDGCHC | 2 cut(s) | 325, 1015 |
| Bsp143I | GATC | 4 cut(s) | 70, 236, 919, 967 |
| Bsp19I | CCATGG | 1 cut(s) | 190 |
| BspACI | CCGC | 3 cut(s) | 37, 212, 284 |
| BspANI | GGCC | 2 cut(s) | 283, 520 |
| BspCNI | CTCAG | 1 cut(s) | 661 |
| BspHI | TCATGA | 1 cut(s) | 325 |
| BspLI | GGNNCC | 2 cut(s) | 282, 606 |
| BspPI | GGATC | 1 cut(s) | 927 |
| BspT104I | TTCGAA | 1 cut(s) | 935 |
| BspTI | CTTAAG | 1 cut(s) | 749 |
| BsrFI | RCCGGY | 1 cut(s) | 977 |
| BsrI | ACTGG | 2 cut(s) | 201, 629 |
| BssAI | RCCGGY | 1 cut(s) | 977 |
| BssECI | CCNNGG | 2 cut(s) | 190, 503 |
| BssMI | GATC | 4 cut(s) | 70, 236, 919, 967 |
| BssSI | CACGAG | 1 cut(s) | 804 |
| BssT1I | CCWWGG | 2 cut(s) | 190, 503 |
| Bst2BI | CACGAG | 1 cut(s) | 804 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 223, 769 |
| Bst6I | CTCTTC | 2 cut(s) | 148, 844 |
| BstAFI | CTTAAG | 1 cut(s) | 749 |
| BstBAI | YACGTR | 1 cut(s) | 944 |
| BstBI | TTCGAA | 1 cut(s) | 935 |
| BstDEI | CTNAG | 1 cut(s) | 648 |
| BstDSI | CCRYGG | 1 cut(s) | 190 |
| BstF5I | GGATG | 2 cut(s) | 85, 643 |
| BstKTI | GATC | 4 cut(s) | 73, 239, 922, 970 |
| BstMBI | GATC | 4 cut(s) | 70, 236, 919, 967 |
| BstMCI | CGRYCG | 1 cut(s) | 970 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 739 |
| BstV1I | GCAGC | 3 cut(s) | 445, 518, 851 |
| BstV2I | GAAGAC | 2 cut(s) | 672, 924 |
| BstX2I | RGATCY | 1 cut(s) | 236 |
| BstYI | RGATCY | 1 cut(s) | 236 |
| BsuRI | GGCC | 2 cut(s) | 283, 520 |
| BtgI | CCRYGG | 1 cut(s) | 190 |
| BtsCI | GGATG | 2 cut(s) | 85, 643 |
| BtsIMutI | CAGTG | 1 cut(s) | 228 |
| CaiI | CAGNNNCTG | 1 cut(s) | 227 |
| CciI | TCATGA | 1 cut(s) | 325 |
| Cfr10I | RCCGGY | 1 cut(s) | 977 |
| Cfr13I | GGNCC | 2 cut(s) | 281, 605 |
| CspAI | ACCGGT | 1 cut(s) | 977 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 204, 239, 319, 354 |
| CviAII | CATG | 2 cut(s) | 191, 326 |
| DdeI | CTNAG | 1 cut(s) | 648 |
| DpnI | GATC | 4 cut(s) | 72, 238, 921, 969 |
| DpnII | GATC | 4 cut(s) | 70, 236, 919, 967 |
| EaeI | YGGCCR | 1 cut(s) | 518 |
| Eam1104I | CTCTTC | 2 cut(s) | 148, 844 |
| EarI | CTCTTC | 2 cut(s) | 148, 844 |
| Eco130I | CCWWGG | 2 cut(s) | 190, 503 |
| Eco24I | GRGCYC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 605 |
| Eco57I | CTGAAG | 1 cut(s) | 701 |
| Eco72I | CACGTG | 1 cut(s) | 944 |
| EcoO109I | RGGNCCY | 1 cut(s) | 605 |
| EcoT14I | CCWWGG | 2 cut(s) | 190, 503 |
| EcoT38I | GRGCYC | 1 cut(s) | 325 |
| ErhI | CCWWGG | 2 cut(s) | 190, 503 |
| FaeI | CATG | 2 cut(s) | 194, 329 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 66, 98 |
| FatI | CATG | 2 cut(s) | 190, 325 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FblI | GTMKAC | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 5 cut(s) | 213, 284, 459, 532, 865 |
| FokI | GGATG | 2 cut(s) | 72, 630 |
| FriOI | GRGCYC | 1 cut(s) | 325 |
| Fsp4HI | GCNGC | 5 cut(s) | 213, 284, 459, 532, 865 |
| FspBI | CTAG | 2 cut(s) | 147, 528 |
| GluI | GCNGC | 5 cut(s) | 213, 284, 459, 532, 865 |
| HaeIII | GGCC | 2 cut(s) | 283, 520 |
| HapII | CCGG | 1 cut(s) | 978 |
| Hin1II | CATG | 2 cut(s) | 194, 329 |
| HindIII | AAGCTT | 1 cut(s) | 740 |
| HinfI | GANTC | 2 cut(s) | 512, 760 |
| HpaII | CCGG | 1 cut(s) | 978 |
| HphI | GGTGA | 3 cut(s) | 311, 417, 676 |
| Hpy166II | GTNNAC | 2 cut(s) | 388, 425 |
| Hpy188I | TCNGA | 4 cut(s) | 548, 559, 990, 1048 |
| Hpy188III | TCNNGA | 3 cut(s) | 326, 815, 917 |
| Hpy8I | GTNNAC | 2 cut(s) | 388, 425 |
| HpyAV | CCTTC | 1 cut(s) | 618 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 223, 769 |
| HpyCH4IV | ACGT | 2 cut(s) | 117, 943 |
| HpyCH4V | TGCA | 5 cut(s) | 166, 406, 809, 867, 998 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 739 |
| HpyF3I | CTNAG | 1 cut(s) | 648 |
| HpySE526I | ACGT | 2 cut(s) | 117, 943 |
| Hsp92II | CATG | 2 cut(s) | 194, 329 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| Kzo9I | GATC | 4 cut(s) | 70, 236, 919, 967 |
| LpnPI | CCDG | 8 cut(s) | 182, 213, 321, 587, 642, 681, 902, 991 |
| Lsp1109I | GCAGC | 3 cut(s) | 445, 518, 851 |
| LweI | GCATC | 4 cut(s) | 163, 393, 652, 871 |
| MaeI | CTAG | 2 cut(s) | 147, 528 |
| MaeII | ACGT | 2 cut(s) | 117, 943 |
| MaeIII | GTNAC | 1 cut(s) | 299 |
| MalI | GATC | 4 cut(s) | 72, 238, 921, 969 |
| MboI | GATC | 4 cut(s) | 70, 236, 919, 967 |
| MboII | GAAGA | 9 cut(s) | 135, 243, 246, 588, 672, 707, 831, 924, 1025 |
| MflI | RGATCY | 1 cut(s) | 236 |
| MhlI | GDGCHC | 2 cut(s) | 325, 1015 |
| MlsI | TGGCCA | 1 cut(s) | 520 |
| MluCI | AATT | 8 cut(s) | 261, 271, 371, 522, 590, 707, 822, 1002 |
| MluNI | TGGCCA | 1 cut(s) | 520 |
| MlyI | GAGTC | 1 cut(s) | 506 |
| MmeI | TCCRAC | 2 cut(s) | 489, 649 |
| MnlI | CCTC | 6 cut(s) | 65, 151, 360, 657, 811, 850 |
| Mox20I | TGGCCA | 1 cut(s) | 520 |
| MscI | TGGCCA | 1 cut(s) | 520 |
| MseI | TTAA | 8 cut(s) | 66, 171, 177, 290, 417, 750, 896, 1065 |
| Msp20I | TGGCCA | 1 cut(s) | 520 |
| MspCI | CTTAAG | 1 cut(s) | 749 |
| MspI | CCGG | 1 cut(s) | 978 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 739 |
| NcoI | CCATGG | 1 cut(s) | 190 |
| NdeII | GATC | 4 cut(s) | 70, 236, 919, 967 |
| NlaIII | CATG | 2 cut(s) | 194, 329 |
| NlaIV | GGNNCC | 2 cut(s) | 282, 606 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NspV | TTCGAA | 1 cut(s) | 935 |
| PagI | TCATGA | 1 cut(s) | 325 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 760 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 196 |
| PinAI | ACCGGT | 1 cut(s) | 977 |
| PkrI | GCNGC | 5 cut(s) | 214, 285, 460, 533, 866 |
| Ple19I | CGATCG | 1 cut(s) | 970 |
| PleI | GAGTC | 1 cut(s) | 506 |
| PmaCI | CACGTG | 1 cut(s) | 944 |
| PmlI | CACGTG | 1 cut(s) | 944 |
| PpsI | GAGTC | 1 cut(s) | 506 |
| Ppu21I | YACGTR | 1 cut(s) | 944 |
| PpuMI | RGGWCCY | 1 cut(s) | 605 |
| PshBI | ATTAAT | 1 cut(s) | 290 |
| Psp1406I | AACGTT | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 1 cut(s) | 605 |
| PspCI | CACGTG | 1 cut(s) | 944 |
| PspN4I | GGNNCC | 2 cut(s) | 282, 606 |
| PspPI | GGNCC | 2 cut(s) | 281, 605 |
| PspPPI | RGGWCCY | 1 cut(s) | 605 |
| PstNI | CAGNNNCTG | 1 cut(s) | 227 |
| PsuI | RGATCY | 1 cut(s) | 236 |
| PvuI | CGATCG | 1 cut(s) | 970 |
| SaqAI | TTAA | 8 cut(s) | 66, 171, 177, 290, 417, 750, 896, 1065 |
| SatI | GCNGC | 5 cut(s) | 213, 284, 459, 532, 865 |
| Sau3AI | GATC | 4 cut(s) | 70, 236, 919, 967 |
| Sau96I | GGNCC | 2 cut(s) | 281, 605 |
| SchI | GAGTC | 1 cut(s) | 506 |
| SduI | GDGCHC | 2 cut(s) | 325, 1015 |
| SfaNI | GCATC | 4 cut(s) | 163, 393, 652, 871 |
| SfuI | TTCGAA | 1 cut(s) | 935 |
| SinI | GGWCC | 1 cut(s) | 605 |
| SmlI | CTYRAG | 2 cut(s) | 749, 815 |
| SmoI | CTYRAG | 2 cut(s) | 749, 815 |
| Sse9I | AATT | 8 cut(s) | 261, 271, 371, 522, 590, 707, 822, 1002 |
| SsiI | CCGC | 3 cut(s) | 37, 212, 284 |
| SspI | AATATT | 1 cut(s) | 294 |
| SspMI | CTAG | 2 cut(s) | 147, 528 |
| StyI | CCWWGG | 2 cut(s) | 190, 503 |
| TaaI | ACNGT | 3 cut(s) | 7, 223, 769 |
| TaiI | ACGT | 2 cut(s) | 120, 946 |
| TaqI | TCGA | 2 cut(s) | 935, 970 |
| TasI | AATT | 8 cut(s) | 261, 271, 371, 522, 590, 707, 822, 1002 |
| TauI | GCSGC | 2 cut(s) | 215, 286 |
| TfiI | GAWTC | 1 cut(s) | 760 |
| Tru1I | TTAA | 8 cut(s) | 66, 171, 177, 290, 417, 750, 896, 1065 |
| Tru9I | TTAA | 8 cut(s) | 66, 171, 177, 290, 417, 750, 896, 1065 |
| TscAI | CASTG | 1 cut(s) | 228 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| TseI | GCWGC | 3 cut(s) | 458, 531, 864 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspDTI | ATGAA | 3 cut(s) | 65, 74, 384 |
| TspRI | CASTG | 1 cut(s) | 228 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 196 |
| Vha464I | CTTAAG | 1 cut(s) | 749 |
| VpaK11BI | GGWCC | 1 cut(s) | 605 |
| VspI | ATTAAT | 1 cut(s) | 290 |
| XapI | RAATTY | 5 cut(s) | 261, 371, 590, 822, 1002 |
| XmiI | GTMKAC | 1 cut(s) | 387 |
| XspI | CTAG | 2 cut(s) | 147, 528 |