Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 576 |
| AciI | CCGC | 2 cut(s) | 16, 576 |
| AclWI | GGATC | 1 cut(s) | 697 |
| AcoI | YGGCCR | 2 cut(s) | 34, 614 |
| AcsI | RAATTY | 5 cut(s) | 104, 359, 591, 703, 895 |
| AfaI | GTAC | 3 cut(s) | 40, 885, 907 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 28, 575 |
| AflII | CTTAAG | 1 cut(s) | 850 |
| AjnI | CCWGG | 2 cut(s) | 511, 667 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 882, 914 |
| AluBI | AGCT | 6 cut(s) | 337, 430, 680, 812, 976, 995 |
| AluI | AGCT | 6 cut(s) | 337, 430, 680, 812, 976, 995 |
| Alw21I | GWGCWC | 1 cut(s) | 978 |
| Alw26I | GTCTC | 2 cut(s) | 175, 878 |
| AlwI | GGATC | 1 cut(s) | 697 |
| AoxI | GGCC | 3 cut(s) | 34, 614, 670 |
| ApeKI | GCWGC | 1 cut(s) | 677 |
| ApoI | RAATTY | 5 cut(s) | 104, 359, 591, 703, 895 |
| AspS9I | GGNCC | 2 cut(s) | 671, 828 |
| AsuC2I | CCSGG | 1 cut(s) | 674 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 587 |
| AsuNHI | GCTAGC | 1 cut(s) | 452 |
| AvaII | GGWCC | 1 cut(s) | 828 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BalI | TGGCCA | 1 cut(s) | 616 |
| BanII | GRGCYC | 2 cut(s) | 160, 978 |
| BbsI | GAAGAC | 1 cut(s) | 543 |
| Bbv12I | GWGCWC | 1 cut(s) | 978 |
| BbvI | GCAGC | 1 cut(s) | 689 |
| BccI | CCATC | 3 cut(s) | 606, 641, 910 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BciT130I | CCWGG | 2 cut(s) | 513, 669 |
| BcnI | CCSGG | 1 cut(s) | 674 |
| BcoDI | GTCTC | 2 cut(s) | 175, 878 |
| BfaI | CTAG | 6 cut(s) | 258, 446, 453, 533, 762, 969 |
| BfrI | CTTAAG | 1 cut(s) | 850 |
| BisI | GCNGC | 2 cut(s) | 17, 678 |
| BlpI | GCTNAGC | 1 cut(s) | 652 |
| BlsI | GCNGC | 2 cut(s) | 18, 679 |
| Bme1390I | CCNGG | 3 cut(s) | 513, 669, 674 |
| Bme18I | GGWCC | 1 cut(s) | 828 |
| BmgT120I | GGNCC | 2 cut(s) | 671, 828 |
| BmiI | GGNNCC | 4 cut(s) | 20, 318, 585, 773 |
| BmrFI | CCNGG | 3 cut(s) | 513, 669, 674 |
| BmsI | GCATC | 2 cut(s) | 379, 526 |
| BmtI | GCTAGC | 1 cut(s) | 456 |
| BpiI | GAAGAC | 1 cut(s) | 543 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 1 cut(s) | 144 |
| BpuMI | CCSGG | 1 cut(s) | 674 |
| BsaAI | YACGTR | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 3 cut(s) | 152, 626, 842 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 28, 575 |
| BseBI | CCWGG | 2 cut(s) | 513, 669 |
| BseDI | CCNNGG | 3 cut(s) | 152, 626, 842 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 28, 575 |
| BseMII | CTCAG | 2 cut(s) | 282, 440 |
| BseRI | GAGGAG | 2 cut(s) | 11, 412 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BseXI | GCAGC | 1 cut(s) | 689 |
| Bsh1236I | CGCG | 1 cut(s) | 576 |
| BshFI | GGCC | 3 cut(s) | 36, 616, 672 |
| BsiHKAI | GWGCWC | 1 cut(s) | 978 |
| BsiSI | CCGG | 2 cut(s) | 248, 674 |
| BslFI | GGGAC | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 28, 575 |
| BsmAI | GTCTC | 2 cut(s) | 175, 878 |
| BsmFI | GGGAC | 1 cut(s) | 142 |
| BsnI | GGCC | 3 cut(s) | 36, 616, 672 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 160, 978 |
| Bsp143I | GATC | 1 cut(s) | 689 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 652 |
| Bsp19I | CCATGG | 1 cut(s) | 842 |
| BspACI | CCGC | 2 cut(s) | 16, 576 |
| BspANI | GGCC | 3 cut(s) | 36, 616, 672 |
| BspCNI | CTCAG | 2 cut(s) | 283, 439 |
| BspFNI | CGCG | 1 cut(s) | 576 |
| BspLI | GGNNCC | 4 cut(s) | 20, 318, 585, 773 |
| BspOI | GCTAGC | 1 cut(s) | 456 |
| BspPI | GGATC | 1 cut(s) | 697 |
| BspTI | CTTAAG | 1 cut(s) | 850 |
| BssECI | CCNNGG | 3 cut(s) | 152, 626, 842 |
| BssMI | GATC | 1 cut(s) | 689 |
| BssT1I | CCWWGG | 3 cut(s) | 152, 626, 842 |
| Bst2UI | CCWGG | 2 cut(s) | 513, 669 |
| Bst6I | CTCTTC | 1 cut(s) | 826 |
| BstAFI | CTTAAG | 1 cut(s) | 850 |
| BstBAI | YACGTR | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 3 cut(s) | 352, 454, 814 |
| BstDEI | CTNAG | 5 cut(s) | 291, 377, 426, 497, 652 |
| BstDSI | CCRYGG | 1 cut(s) | 842 |
| BstFNI | CGCG | 1 cut(s) | 576 |
| BstKTI | GATC | 1 cut(s) | 692 |
| BstMAI | GTCTC | 2 cut(s) | 175, 878 |
| BstMBI | GATC | 1 cut(s) | 689 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 16, 669 |
| BstNI | CCWGG | 2 cut(s) | 513, 669 |
| BstNSI | RCATGY | 1 cut(s) | 460 |
| BstSCI | CCNGG | 3 cut(s) | 511, 667, 672 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstUI | CGCG | 1 cut(s) | 576 |
| BstV1I | GCAGC | 1 cut(s) | 689 |
| BstV2I | GAAGAC | 1 cut(s) | 543 |
| BsuRI | GGCC | 3 cut(s) | 36, 616, 672 |
| BtgI | CCRYGG | 1 cut(s) | 842 |
| BtsIMutI | CAGTG | 1 cut(s) | 642 |
| Cac8I | GCNNGC | 3 cut(s) | 352, 454, 814 |
| Cfr13I | GGNCC | 2 cut(s) | 671, 828 |
| Csp6I | GTAC | 3 cut(s) | 39, 884, 906 |
| CviAII | CATG | 5 cut(s) | 93, 213, 457, 599, 843 |
| CviQI | GTAC | 3 cut(s) | 39, 884, 906 |
| DdeI | CTNAG | 5 cut(s) | 291, 377, 426, 497, 652 |
| DpnI | GATC | 1 cut(s) | 691 |
| DpnII | GATC | 1 cut(s) | 689 |
| EaeI | YGGCCR | 2 cut(s) | 34, 614 |
| Eam1104I | CTCTTC | 1 cut(s) | 826 |
| EarI | CTCTTC | 1 cut(s) | 826 |
| Ecl136II | GAGCTC | 1 cut(s) | 976 |
| Eco130I | CCWWGG | 3 cut(s) | 152, 626, 842 |
| Eco24I | GRGCYC | 2 cut(s) | 160, 978 |
| Eco47I | GGWCC | 1 cut(s) | 828 |
| Eco53kI | GAGCTC | 1 cut(s) | 976 |
| EcoICRI | GAGCTC | 1 cut(s) | 976 |
| EcoRI | GAATTC | 1 cut(s) | 703 |
| EcoRII | CCWGG | 2 cut(s) | 511, 667 |
| EcoT14I | CCWWGG | 3 cut(s) | 152, 626, 842 |
| EcoT38I | GRGCYC | 2 cut(s) | 160, 978 |
| ErhI | CCWWGG | 3 cut(s) | 152, 626, 842 |
| FaeI | CATG | 5 cut(s) | 96, 216, 460, 602, 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FaqI | GGGAC | 1 cut(s) | 142 |
| FatI | CATG | 5 cut(s) | 92, 212, 456, 598, 842 |
| Fnu4HI | GCNGC | 2 cut(s) | 17, 678 |
| FriOI | GRGCYC | 2 cut(s) | 160, 978 |
| Fsp4HI | GCNGC | 2 cut(s) | 17, 678 |
| FspBI | CTAG | 6 cut(s) | 258, 446, 453, 533, 762, 969 |
| GluI | GCNGC | 2 cut(s) | 17, 678 |
| HaeIII | GGCC | 3 cut(s) | 36, 616, 672 |
| HapII | CCGG | 2 cut(s) | 248, 674 |
| Hin1II | CATG | 5 cut(s) | 96, 216, 460, 602, 846 |
| HinfI | GANTC | 3 cut(s) | 130, 794, 930 |
| HpaII | CCGG | 2 cut(s) | 248, 674 |
| HphI | GGTGA | 2 cut(s) | 344, 587 |
| Hpy166II | GTNNAC | 3 cut(s) | 462, 640, 886 |
| Hpy188I | TCNGA | 4 cut(s) | 66, 271, 301, 721 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 314, 533 |
| Hpy8I | GTNNAC | 3 cut(s) | 462, 640, 886 |
| HpyAV | CCTTC | 8 cut(s) | 172, 176, 238, 330, 352, 475, 721, 759 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 2 cut(s) | 52, 941 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 16, 669 |
| HpyF3I | CTNAG | 5 cut(s) | 291, 377, 426, 497, 652 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 5 cut(s) | 96, 216, 460, 602, 846 |
| Kzo9I | GATC | 1 cut(s) | 689 |
| LmnI | GCTCC | 6 cut(s) | 24, 316, 514, 571, 589, 981 |
| Lsp1109I | GCAGC | 1 cut(s) | 689 |
| LweI | GCATC | 2 cut(s) | 379, 526 |
| MaeI | CTAG | 6 cut(s) | 258, 446, 453, 533, 762, 969 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 4 cut(s) | 119, 142, 236, 515 |
| MalI | GATC | 1 cut(s) | 691 |
| MboI | GATC | 1 cut(s) | 689 |
| MboII | GAAGA | 3 cut(s) | 315, 543, 813 |
| MfeI | CAATTG | 1 cut(s) | 868 |
| MhlI | GDGCHC | 3 cut(s) | 100, 160, 978 |
| MlsI | TGGCCA | 1 cut(s) | 616 |
| MluNI | TGGCCA | 1 cut(s) | 616 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MmeI | TCCRAC | 1 cut(s) | 765 |
| MnlI | CCTC | 9 cut(s) | 32, 179, 234, 294, 337, 433, 718, 849, 975 |
| Mox20I | TGGCCA | 1 cut(s) | 616 |
| MscI | TGGCCA | 1 cut(s) | 616 |
| MseI | TTAA | 3 cut(s) | 86, 435, 851 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| Msp20I | TGGCCA | 1 cut(s) | 616 |
| MspCI | CTTAAG | 1 cut(s) | 850 |
| MspI | CCGG | 2 cut(s) | 248, 674 |
| MspR9I | CCNGG | 3 cut(s) | 513, 669, 674 |
| MunI | CAATTG | 1 cut(s) | 868 |
| MvaI | CCWGG | 2 cut(s) | 513, 669 |
| MvnI | CGCG | 1 cut(s) | 576 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 16, 669 |
| NciI | CCSGG | 1 cut(s) | 674 |
| NcoI | CCATGG | 1 cut(s) | 842 |
| NdeII | GATC | 1 cut(s) | 689 |
| NheI | GCTAGC | 1 cut(s) | 452 |
| NlaIII | CATG | 5 cut(s) | 96, 216, 460, 602, 846 |
| NlaIV | GGNNCC | 4 cut(s) | 20, 318, 585, 773 |
| NmuCI | GTSAC | 2 cut(s) | 236, 515 |
| NspI | RCATGY | 1 cut(s) | 460 |
| PfeI | GAWTC | 2 cut(s) | 794, 930 |
| PkrI | GCNGC | 2 cut(s) | 18, 679 |
| PleI | GAGTC | 1 cut(s) | 124 |
| PpsI | GAGTC | 1 cut(s) | 124 |
| Ppu21I | YACGTR | 1 cut(s) | 101 |
| Psp124BI | GAGCTC | 1 cut(s) | 978 |
| Psp6I | CCWGG | 2 cut(s) | 511, 667 |
| PspGI | CCWGG | 2 cut(s) | 511, 667 |
| PspN4I | GGNNCC | 4 cut(s) | 20, 318, 585, 773 |
| PspPI | GGNCC | 2 cut(s) | 671, 828 |
| RsaI | GTAC | 3 cut(s) | 40, 885, 907 |
| RsaNI | GTAC | 3 cut(s) | 39, 884, 906 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SacI | GAGCTC | 1 cut(s) | 978 |
| SaqAI | TTAA | 3 cut(s) | 86, 435, 851 |
| SatI | GCNGC | 2 cut(s) | 17, 678 |
| Sau3AI | GATC | 1 cut(s) | 689 |
| Sau96I | GGNCC | 2 cut(s) | 671, 828 |
| SchI | GAGTC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 3 cut(s) | 513, 669, 674 |
| SduI | GDGCHC | 3 cut(s) | 100, 160, 978 |
| SfaNI | GCATC | 2 cut(s) | 379, 526 |
| SinI | GGWCC | 1 cut(s) | 828 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 2 cut(s) | 159, 850 |
| SmoI | CTYRAG | 2 cut(s) | 159, 850 |
| SsiI | CCGC | 2 cut(s) | 16, 576 |
| SspMI | CTAG | 6 cut(s) | 258, 446, 453, 533, 762, 969 |
| SstI | GAGCTC | 1 cut(s) | 978 |
| StyD4I | CCNGG | 3 cut(s) | 511, 667, 672 |
| StyI | CCWWGG | 3 cut(s) | 152, 626, 842 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 4 cut(s) | 409, 487, 747, 901 |
| TaqII | GACCGA | 1 cut(s) | 816 |
| TatI | WGTACW | 2 cut(s) | 883, 905 |
| TauI | GCSGC | 1 cut(s) | 19 |
| TfiI | GAWTC | 2 cut(s) | 794, 930 |
| Tru1I | TTAA | 3 cut(s) | 86, 435, 851 |
| Tru9I | TTAA | 3 cut(s) | 86, 435, 851 |
| TscAI | CASTG | 1 cut(s) | 649 |
| TseFI | GTSAC | 2 cut(s) | 236, 515 |
| TseI | GCWGC | 1 cut(s) | 677 |
| Tsp45I | GTSAC | 2 cut(s) | 236, 515 |
| TspDTI | ATGAA | 4 cut(s) | 201, 372, 908, 1017 |
| TspRI | CASTG | 1 cut(s) | 649 |
| Vha464I | CTTAAG | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 828 |
| XapI | RAATTY | 5 cut(s) | 104, 359, 591, 703, 895 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XceI | RCATGY | 1 cut(s) | 460 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 624 |
| XspI | CTAG | 6 cut(s) | 258, 446, 453, 533, 762, 969 |