ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 4 - 79 | 2.1e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 238 |
| AclWI | GGATC | 1 cut(s) | 28 |
| AcsI | RAATTY | 1 cut(s) | 83 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AgsI | TTSAA | 1 cut(s) | 280 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 27, 59 |
| AluBI | AGCT | 1 cut(s) | 166 |
| AluI | AGCT | 1 cut(s) | 166 |
| Alw26I | GTCTC | 2 cut(s) | 107, 264 |
| AlwI | GGATC | 1 cut(s) | 28 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| ApoI | RAATTY | 1 cut(s) | 83 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 106, 138 |
| AseI | ATTAAT | 1 cut(s) | 9 |
| AsuC2I | CCSGG | 1 cut(s) | 68 |
| BbvI | GCAGC | 1 cut(s) | 143 |
| BccI | CCATC | 1 cut(s) | 11 |
| BcnI | CCSGG | 1 cut(s) | 68 |
| BcoDI | GTCTC | 2 cut(s) | 107, 264 |
| BfaI | CTAG | 2 cut(s) | 120, 218 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| BmcAI | AGTACT | 1 cut(s) | 222 |
| Bme1390I | CCNGG | 1 cut(s) | 68 |
| BmrFI | CCNGG | 1 cut(s) | 68 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| BpuMI | CCSGG | 1 cut(s) | 68 |
| BsaI | GGTCTC | 1 cut(s) | 264 |
| BseMII | CTCAG | 1 cut(s) | 314 |
| BseXI | GCAGC | 1 cut(s) | 143 |
| BsiSI | CCGG | 1 cut(s) | 67 |
| BsmAI | GTCTC | 2 cut(s) | 107, 264 |
| Bso31I | GGTCTC | 1 cut(s) | 264 |
| Bsp143I | GATC | 1 cut(s) | 20 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspPI | GGATC | 1 cut(s) | 28 |
| BspTNI | GGTCTC | 1 cut(s) | 264 |
| BssMI | GATC | 1 cut(s) | 20 |
| BssNAI | GTATAC | 1 cut(s) | 239 |
| Bst1107I | GTATAC | 1 cut(s) | 239 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 267 |
| BstDEI | CTNAG | 1 cut(s) | 300 |
| BstKTI | GATC | 1 cut(s) | 23 |
| BstMAI | GTCTC | 2 cut(s) | 107, 264 |
| BstMBI | GATC | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 66 |
| BstV1I | GCAGC | 1 cut(s) | 143 |
| BstZ17I | GTATAC | 1 cut(s) | 239 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 2 cut(s) | 24, 32 |
| CviJI | RGCY | 4 cut(s) | 102, 146, 158, 166 |
| CviKI_1 | RGCY | 4 cut(s) | 102, 146, 158, 166 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DdeI | CTNAG | 1 cut(s) | 300 |
| DpnI | GATC | 1 cut(s) | 22 |
| DpnII | GATC | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 267 |
| EarI | CTCTTC | 2 cut(s) | 30, 267 |
| Eco31I | GGTCTC | 1 cut(s) | 264 |
| FaeI | CATG | 2 cut(s) | 27, 35 |
| FaiI | YATR | 9 cut(s) | 25, 33, 54, 152, 192, 231, 239, 289, 291 |
| FatI | CATG | 2 cut(s) | 23, 31 |
| FblI | GTMKAC | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 2 cut(s) | 120, 218 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HapII | CCGG | 1 cut(s) | 67 |
| Hin1II | CATG | 2 cut(s) | 27, 35 |
| HinfI | GANTC | 2 cut(s) | 115, 209 |
| HpaII | CCGG | 1 cut(s) | 67 |
| Hpy166II | GTNNAC | 1 cut(s) | 239 |
| Hpy188I | TCNGA | 2 cut(s) | 16, 303 |
| Hpy188III | TCNNGA | 2 cut(s) | 110, 179 |
| Hpy8I | GTNNAC | 1 cut(s) | 239 |
| HpyAV | CCTTC | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 1 cut(s) | 131 |
| HpyF3I | CTNAG | 1 cut(s) | 300 |
| Hsp92II | CATG | 2 cut(s) | 27, 35 |
| Kzo9I | GATC | 1 cut(s) | 20 |
| LpnPI | CCDG | 2 cut(s) | 80, 84 |
| Lsp1109I | GCAGC | 1 cut(s) | 143 |
| MaeI | CTAG | 2 cut(s) | 120, 218 |
| MalI | GATC | 1 cut(s) | 22 |
| MboI | GATC | 1 cut(s) | 20 |
| MboII | GAAGA | 2 cut(s) | 47, 254 |
| MluCI | AATT | 5 cut(s) | 6, 10, 83, 280, 313 |
| MlyI | GAGTC | 1 cut(s) | 109 |
| MmeI | TCCRAC | 1 cut(s) | 180 |
| MnlI | CCTC | 2 cut(s) | 31, 196 |
| MseI | TTAA | 2 cut(s) | 9, 312 |
| MspI | CCGG | 1 cut(s) | 67 |
| MspR9I | CCNGG | 1 cut(s) | 68 |
| NciI | CCSGG | 1 cut(s) | 68 |
| NdeII | GATC | 1 cut(s) | 20 |
| NlaIII | CATG | 2 cut(s) | 27, 35 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 109 |
| PpsI | GAGTC | 1 cut(s) | 109 |
| PshBI | ATTAAT | 1 cut(s) | 9 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| SaqAI | TTAA | 2 cut(s) | 9, 312 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 1 cut(s) | 20 |
| ScaI | AGTACT | 1 cut(s) | 222 |
| SchI | GAGTC | 1 cut(s) | 109 |
| ScrFI | CCNGG | 1 cut(s) | 68 |
| SetI | ASST | 4 cut(s) | 82, 168, 207, 244 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| Sse9I | AATT | 5 cut(s) | 6, 10, 83, 280, 313 |
| SspMI | CTAG | 2 cut(s) | 120, 218 |
| StyD4I | CCNGG | 1 cut(s) | 66 |
| TaqI | TCGA | 3 cut(s) | 125, 178, 265 |
| TasI | AATT | 5 cut(s) | 6, 10, 83, 280, 313 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 2 cut(s) | 9, 312 |
| Tru9I | TTAA | 2 cut(s) | 9, 312 |
| TseI | GCWGC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 3 cut(s) | 17, 48, 201 |
| TspGWI | ACGGA | 1 cut(s) | 224 |
| VspI | ATTAAT | 1 cut(s) | 9 |
| XapI | RAATTY | 1 cut(s) | 83 |
| XmiI | GTMKAC | 1 cut(s) | 238 |
| XspI | CTAG | 2 cut(s) | 120, 218 |
| ZrmI | AGTACT | 1 cut(s) | 222 |