Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NUDIX | PF00293 | 66 - 197 | 9.9e-15 | NUDIX domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 265 |
| AccI | GTMKAC | 2 cut(s) | 466, 756 |
| AccII | CGCG | 1 cut(s) | 25 |
| AciI | CCGC | 3 cut(s) | 23, 52, 68 |
| AclI | AACGTT | 1 cut(s) | 185 |
| AclWI | GGATC | 3 cut(s) | 249, 380, 393 |
| AcoI | YGGCCR | 1 cut(s) | 507 |
| AfaI | GTAC | 2 cut(s) | 453, 644 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 461 |
| AflIII | ACRYGT | 1 cut(s) | 247 |
| AgsI | TTSAA | 3 cut(s) | 227, 419, 490 |
| AjnI | CCWGG | 2 cut(s) | 77, 307 |
| AleI | CACNNNNGTG | 1 cut(s) | 291 |
| AluBI | AGCT | 3 cut(s) | 49, 203, 394 |
| AluI | AGCT | 3 cut(s) | 49, 203, 394 |
| Alw26I | GTCTC | 3 cut(s) | 168, 225, 324 |
| AlwI | GGATC | 3 cut(s) | 249, 380, 393 |
| AoxI | GGCC | 4 cut(s) | 33, 191, 507, 704 |
| ApeKI | GCWGC | 2 cut(s) | 203, 683 |
| AspS9I | GGNCC | 3 cut(s) | 4, 34, 192 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 356 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BamHI | GGATCC | 1 cut(s) | 385 |
| BbvI | GCAGC | 2 cut(s) | 190, 670 |
| BccI | CCATC | 1 cut(s) | 335 |
| BceAI | ACGGC | 1 cut(s) | 719 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 98, 132 |
| BciT130I | CCWGG | 2 cut(s) | 79, 309 |
| BcoDI | GTCTC | 3 cut(s) | 168, 225, 324 |
| BisI | GCNGC | 2 cut(s) | 204, 684 |
| BlsI | GCNGC | 2 cut(s) | 205, 685 |
| BmcAI | AGTACT | 1 cut(s) | 644 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 309 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 34, 192 |
| BmiI | GGNNCC | 2 cut(s) | 6, 387 |
| BmrFI | CCNGG | 2 cut(s) | 79, 309 |
| BmrI | ACTGGG | 1 cut(s) | 726 |
| BmsI | GCATC | 4 cut(s) | 445, 520, 579, 695 |
| BmuI | ACTGGG | 1 cut(s) | 726 |
| Bpu10I | CCTNAGC | 1 cut(s) | 390 |
| BsaAI | YACGTR | 1 cut(s) | 248 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 93, 537 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 74, 104, 569, 599 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 461 |
| Bse118I | RCCGGY | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 732 |
| BseBI | CCWGG | 2 cut(s) | 79, 309 |
| BseDI | CCNNGG | 3 cut(s) | 78, 93, 537 |
| BseGI | GGATG | 3 cut(s) | 343, 562, 594 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 461 |
| BseMII | CTCAG | 2 cut(s) | 141, 434 |
| BseNI | ACTGG | 1 cut(s) | 732 |
| BseRI | GAGGAG | 4 cut(s) | 110, 338, 386, 590 |
| BseX3I | CGGCCG | 1 cut(s) | 507 |
| BseXI | GCAGC | 2 cut(s) | 190, 670 |
| Bsh1236I | CGCG | 1 cut(s) | 25 |
| Bsh1285I | CGRYCG | 1 cut(s) | 510 |
| BshFI | GGCC | 4 cut(s) | 35, 193, 509, 706 |
| BsiEI | CGRYCG | 1 cut(s) | 510 |
| BsiSI | CCGG | 2 cut(s) | 120, 506 |
| BslFI | GGGAC | 2 cut(s) | 95, 118 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 461 |
| BsmAI | GTCTC | 3 cut(s) | 168, 225, 324 |
| BsmBI | CGTCTC | 1 cut(s) | 225 |
| BsmFI | GGGAC | 2 cut(s) | 95, 118 |
| BsmI | GAATGC | 1 cut(s) | 485 |
| BsnI | GGCC | 4 cut(s) | 35, 193, 509, 706 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| Bsp143I | GATC | 3 cut(s) | 213, 241, 385 |
| BspACI | CCGC | 3 cut(s) | 23, 52, 68 |
| BspANI | GGCC | 4 cut(s) | 35, 193, 509, 706 |
| BspCNI | CTCAG | 2 cut(s) | 142, 435 |
| BspFNI | CGCG | 1 cut(s) | 25 |
| BspLI | GGNNCC | 2 cut(s) | 6, 387 |
| BspPI | GGATC | 3 cut(s) | 249, 380, 393 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrFI | RCCGGY | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 732 |
| BssAI | RCCGGY | 1 cut(s) | 119 |
| BssECI | CCNNGG | 3 cut(s) | 78, 93, 537 |
| BssMI | GATC | 3 cut(s) | 213, 241, 385 |
| BssNAI | GTATAC | 1 cut(s) | 467 |
| BssT1I | CCWWGG | 1 cut(s) | 537 |
| Bst1107I | GTATAC | 1 cut(s) | 467 |
| Bst2UI | CCWGG | 2 cut(s) | 79, 309 |
| Bst4CI | ACNGT | 3 cut(s) | 236, 412, 769 |
| BstBAI | YACGTR | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 121, 495 |
| BstDEI | CTNAG | 4 cut(s) | 150, 390, 443, 746 |
| BstF5I | GGATG | 3 cut(s) | 343, 562, 594 |
| BstFNI | CGCG | 1 cut(s) | 25 |
| BstKTI | GATC | 3 cut(s) | 216, 244, 388 |
| BstMAI | GTCTC | 3 cut(s) | 168, 225, 324 |
| BstMBI | GATC | 3 cut(s) | 213, 241, 385 |
| BstMCI | CGRYCG | 1 cut(s) | 510 |
| BstNI | CCWGG | 2 cut(s) | 79, 309 |
| BstSCI | CCNGG | 2 cut(s) | 77, 307 |
| BstUI | CGCG | 1 cut(s) | 25 |
| BstV1I | GCAGC | 2 cut(s) | 190, 670 |
| BstX2I | RGATCY | 2 cut(s) | 241, 385 |
| BstYI | RGATCY | 2 cut(s) | 241, 385 |
| BstZ17I | GTATAC | 1 cut(s) | 467 |
| BstZI | CGGCCG | 1 cut(s) | 507 |
| BsuRI | GGCC | 4 cut(s) | 35, 193, 509, 706 |
| BtsCI | GGATG | 3 cut(s) | 343, 562, 594 |
| BtsIMutI | CAGTG | 1 cut(s) | 408 |
| Cac8I | GCNNGC | 2 cut(s) | 121, 495 |
| Cfr10I | RCCGGY | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 34, 192 |
| Csp6I | GTAC | 2 cut(s) | 452, 643 |
| CviQI | GTAC | 2 cut(s) | 452, 643 |
| DdeI | CTNAG | 4 cut(s) | 150, 390, 443, 746 |
| DpnI | GATC | 3 cut(s) | 215, 243, 387 |
| DpnII | GATC | 3 cut(s) | 213, 241, 385 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 265 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 265 |
| EaeI | YGGCCR | 1 cut(s) | 507 |
| EagI | CGGCCG | 1 cut(s) | 507 |
| EciI | GGCGGA | 1 cut(s) | 41 |
| EclXI | CGGCCG | 1 cut(s) | 507 |
| Eco130I | CCWWGG | 1 cut(s) | 537 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco52I | CGGCCG | 1 cut(s) | 507 |
| EcoRII | CCWGG | 2 cut(s) | 77, 307 |
| EcoT14I | CCWWGG | 1 cut(s) | 537 |
| ErhI | CCWWGG | 1 cut(s) | 537 |
| Esp3I | CGTCTC | 1 cut(s) | 225 |
| FaiI | YATR | 6 cut(s) | 467, 652, 697, 699, 738, 778 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 629, 661 |
| FaqI | GGGAC | 2 cut(s) | 95, 118 |
| FauI | CCCGC | 1 cut(s) | 30 |
| FblI | GTMKAC | 2 cut(s) | 466, 756 |
| Fnu4HI | GCNGC | 2 cut(s) | 204, 684 |
| FokI | GGATG | 3 cut(s) | 350, 569, 601 |
| Fsp4HI | GCNGC | 2 cut(s) | 204, 684 |
| GluI | GCNGC | 2 cut(s) | 204, 684 |
| HaeIII | GGCC | 4 cut(s) | 35, 193, 509, 706 |
| HapII | CCGG | 2 cut(s) | 120, 506 |
| HindIII | AAGCTT | 1 cut(s) | 392 |
| HinfI | GANTC | 6 cut(s) | 89, 105, 152, 518, 607, 727 |
| HpaII | CCGG | 2 cut(s) | 120, 506 |
| HphI | GGTGA | 2 cut(s) | 305, 356 |
| Hpy166II | GTNNAC | 3 cut(s) | 282, 467, 757 |
| Hpy188I | TCNGA | 1 cut(s) | 94 |
| Hpy188III | TCNNGA | 2 cut(s) | 416, 673 |
| Hpy8I | GTNNAC | 3 cut(s) | 282, 467, 757 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 221 |
| HpyCH4III | ACNGT | 3 cut(s) | 236, 412, 769 |
| HpyCH4IV | ACGT | 2 cut(s) | 185, 247 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 686 |
| HpyF3I | CTNAG | 4 cut(s) | 150, 390, 443, 746 |
| HpySE526I | ACGT | 2 cut(s) | 185, 247 |
| KroI | GCCGGC | 1 cut(s) | 119 |
| KroNI | GCCGGC | 1 cut(s) | 121 |
| Kzo9I | GATC | 3 cut(s) | 213, 241, 385 |
| LmnI | GCTCC | 5 cut(s) | 54, 97, 502, 538, 721 |
| Lsp1109I | GCAGC | 2 cut(s) | 190, 670 |
| LweI | GCATC | 4 cut(s) | 445, 520, 579, 695 |
| MaeII | ACGT | 2 cut(s) | 185, 247 |
| MaeIII | GTNAC | 3 cut(s) | 344, 406, 593 |
| MalI | GATC | 3 cut(s) | 215, 243, 387 |
| MboI | GATC | 3 cut(s) | 213, 241, 385 |
| MboII | GAAGA | 1 cut(s) | 122 |
| MfeI | CAATTG | 2 cut(s) | 165, 690 |
| MflI | RGATCY | 2 cut(s) | 241, 385 |
| MluCI | AATT | 2 cut(s) | 165, 690 |
| MlyI | GAGTC | 2 cut(s) | 83, 161 |
| MroNI | GCCGGC | 1 cut(s) | 119 |
| MseI | TTAA | 3 cut(s) | 399, 471, 659 |
| MslI | CAYNNNNRTG | 1 cut(s) | 291 |
| MspI | CCGG | 2 cut(s) | 120, 506 |
| MspR9I | CCNGG | 2 cut(s) | 79, 309 |
| MunI | CAATTG | 2 cut(s) | 165, 690 |
| Mva1269I | GAATGC | 1 cut(s) | 485 |
| MvaI | CCWGG | 2 cut(s) | 79, 309 |
| MvnI | CGCG | 1 cut(s) | 25 |
| NaeI | GCCGGC | 1 cut(s) | 121 |
| NdeII | GATC | 3 cut(s) | 213, 241, 385 |
| NgoMIV | GCCGGC | 1 cut(s) | 119 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 387 |
| NmuCI | GTSAC | 2 cut(s) | 344, 406 |
| OliI | CACNNNNGTG | 1 cut(s) | 291 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 90 |
| PctI | GAATGC | 1 cut(s) | 485 |
| PdiI | GCCGGC | 1 cut(s) | 121 |
| PfeI | GAWTC | 4 cut(s) | 105, 518, 607, 727 |
| PkrI | GCNGC | 2 cut(s) | 205, 685 |
| PleI | GAGTC | 2 cut(s) | 83, 160 |
| PpsI | GAGTC | 2 cut(s) | 83, 160 |
| Ppu21I | YACGTR | 1 cut(s) | 248 |
| Psp1406I | AACGTT | 1 cut(s) | 185 |
| Psp6I | CCWGG | 2 cut(s) | 77, 307 |
| PspGI | CCWGG | 2 cut(s) | 77, 307 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 387 |
| PspPI | GGNCC | 3 cut(s) | 4, 34, 192 |
| PsuI | RGATCY | 2 cut(s) | 241, 385 |
| RsaI | GTAC | 2 cut(s) | 453, 644 |
| RsaNI | GTAC | 2 cut(s) | 452, 643 |
| RseI | CAYNNNNRTG | 1 cut(s) | 291 |
| SaqAI | TTAA | 3 cut(s) | 399, 471, 659 |
| SatI | GCNGC | 2 cut(s) | 204, 684 |
| Sau3AI | GATC | 3 cut(s) | 213, 241, 385 |
| Sau96I | GGNCC | 3 cut(s) | 4, 34, 192 |
| ScaI | AGTACT | 1 cut(s) | 644 |
| SchI | GAGTC | 2 cut(s) | 83, 161 |
| ScrFI | CCNGG | 2 cut(s) | 79, 309 |
| SfaNI | GCATC | 4 cut(s) | 445, 520, 579, 695 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 291 |
| Sse9I | AATT | 2 cut(s) | 165, 690 |
| SsiI | CCGC | 3 cut(s) | 23, 52, 68 |
| StyD4I | CCNGG | 2 cut(s) | 77, 307 |
| StyI | CCWWGG | 1 cut(s) | 537 |
| TaaI | ACNGT | 3 cut(s) | 236, 412, 769 |
| TaiI | ACGT | 2 cut(s) | 188, 250 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 2 cut(s) | 165, 690 |
| TatI | WGTACW | 1 cut(s) | 642 |
| TfiI | GAWTC | 4 cut(s) | 105, 518, 607, 727 |
| Tru1I | TTAA | 3 cut(s) | 399, 471, 659 |
| Tru9I | TTAA | 3 cut(s) | 399, 471, 659 |
| TscAI | CASTG | 1 cut(s) | 415 |
| TseFI | GTSAC | 2 cut(s) | 344, 406 |
| TseI | GCWGC | 2 cut(s) | 203, 683 |
| Tsp45I | GTSAC | 2 cut(s) | 344, 406 |
| TspDTI | ATGAA | 4 cut(s) | 538, 573, 599, 714 |
| TspRI | CASTG | 1 cut(s) | 415 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XmiI | GTMKAC | 2 cut(s) | 466, 756 |
| ZrmI | AGTACT | 1 cut(s) | 644 |