ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 93, 247 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 90 |
| AccBSI | CCGCTC | 1 cut(s) | 375 |
| AccI | GTMKAC | 1 cut(s) | 114 |
| AccII | CGCG | 1 cut(s) | 44 |
| AciI | CCGC | 9 cut(s) | 128, 179, 251, 254, 257, 348, 375, 395, 398 |
| AclWI | GGATC | 5 cut(s) | 170, 438, 790, 821, 860 |
| AcoI | YGGCCR | 1 cut(s) | 81 |
| AcuI | CTGAAG | 1 cut(s) | 47 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AfaI | GTAC | 3 cut(s) | 71, 206, 553 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 90, 124, 575, 805, 806 |
| AflIII | ACRYGT | 1 cut(s) | 201 |
| AgsI | TTSAA | 2 cut(s) | 142, 649 |
| AjiI | CACGTC | 2 cut(s) | 58, 202 |
| AjnI | CCWGG | 4 cut(s) | 48, 535, 589, 778 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 122, 154 |
| AluBI | AGCT | 4 cut(s) | 315, 412, 597, 883 |
| AluI | AGCT | 4 cut(s) | 315, 412, 597, 883 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| AlwI | GGATC | 5 cut(s) | 170, 438, 790, 821, 860 |
| Ama87I | CYCGRG | 1 cut(s) | 695 |
| AoxI | GGCC | 3 cut(s) | 81, 132, 156 |
| ApeKI | GCWGC | 2 cut(s) | 594, 602 |
| AspLEI | GCGC | 2 cut(s) | 250, 890 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuC2I | CCSGG | 2 cut(s) | 37, 98 |
| AsuHPI | GGTGA | 2 cut(s) | 805, 935 |
| AvaI | CYCGRG | 1 cut(s) | 695 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| AxyI | CCTNAGG | 1 cut(s) | 848 |
| BalI | TGGCCA | 1 cut(s) | 83 |
| BanI | GGYRCC | 2 cut(s) | 93, 247 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 53, 85 |
| BbsI | GAAGAC | 1 cut(s) | 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BbvI | GCAGC | 2 cut(s) | 606, 614 |
| BccI | CCATC | 4 cut(s) | 534, 650, 731, 883 |
| BceAI | ACGGC | 1 cut(s) | 223 |
| BciT130I | CCWGG | 4 cut(s) | 50, 537, 591, 780 |
| BcnI | CCSGG | 2 cut(s) | 37, 98 |
| BfaI | CTAG | 1 cut(s) | 920 |
| BfmI | CTRYAG | 1 cut(s) | 600 |
| BfoI | RGCGCY | 1 cut(s) | 251 |
| BglII | AGATCT | 3 cut(s) | 192, 607, 899 |
| BisI | GCNGC | 6 cut(s) | 251, 254, 257, 396, 595, 603 |
| BlpI | GCTNAGC | 1 cut(s) | 884 |
| BlsI | GCNGC | 6 cut(s) | 252, 255, 258, 397, 596, 604 |
| Bme1390I | CCNGG | 6 cut(s) | 37, 50, 98, 537, 591, 780 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmeT110I | CYCGRG | 1 cut(s) | 695 |
| BmgBI | CACGTC | 2 cut(s) | 58, 202 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmiI | GGNNCC | 3 cut(s) | 95, 249, 273 |
| BmrFI | CCNGG | 6 cut(s) | 37, 50, 98, 537, 591, 780 |
| BmrI | ACTGGG | 1 cut(s) | 752 |
| BmuI | ACTGGG | 1 cut(s) | 752 |
| BpiI | GAAGAC | 1 cut(s) | 341 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 884 |
| BpuMI | CCSGG | 2 cut(s) | 37, 98 |
| BsaBI | GATNNNNATC | 2 cut(s) | 105, 527 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 2 cut(s) | 260, 732 |
| BsaWI | WCCGGW | 2 cut(s) | 109, 306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 122, 152 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 90, 124, 575, 805, 806 |
| Bse1I | ACTGG | 2 cut(s) | 712, 758 |
| Bse21I | CCTNAGG | 1 cut(s) | 848 |
| Bse8I | GATNNNNATC | 2 cut(s) | 105, 527 |
| BseBI | CCWGG | 4 cut(s) | 50, 537, 591, 780 |
| BseDI | CCNNGG | 2 cut(s) | 260, 732 |
| BseGI | GGATG | 4 cut(s) | 283, 545, 661, 742 |
| BseJI | GATNNNNATC | 2 cut(s) | 105, 527 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 90, 124, 575, 805, 806 |
| BseMII | CTCAG | 4 cut(s) | 184, 862, 898, 899 |
| BseNI | ACTGG | 2 cut(s) | 712, 758 |
| BseRI | GAGGAG | 4 cut(s) | 227, 277, 376, 803 |
| BseXI | GCAGC | 2 cut(s) | 606, 614 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| Bsh1285I | CGRYCG | 1 cut(s) | 114 |
| BshFI | GGCC | 3 cut(s) | 83, 134, 158 |
| BshNI | GGYRCC | 2 cut(s) | 93, 247 |
| BsiEI | CGRYCG | 1 cut(s) | 114 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 695 |
| BsiSI | CCGG | 5 cut(s) | 37, 98, 110, 275, 307 |
| BslFI | GGGAC | 1 cut(s) | 231 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 90, 124, 575, 805, 806 |
| BsmFI | GGGAC | 1 cut(s) | 231 |
| BsmI | GAATGC | 1 cut(s) | 816 |
| BsnI | GGCC | 3 cut(s) | 83, 134, 158 |
| BsoBI | CYCGRG | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 884 |
| BspACI | CCGC | 9 cut(s) | 128, 179, 251, 254, 257, 348, 375, 395, 398 |
| BspANI | GGCC | 3 cut(s) | 83, 134, 158 |
| BspCNI | CTCAG | 4 cut(s) | 183, 861, 897, 900 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 3 cut(s) | 95, 249, 273 |
| BspMAI | CTGCAG | 1 cut(s) | 604 |
| BspPI | GGATC | 5 cut(s) | 170, 438, 790, 821, 860 |
| BspQI | GCTCTTC | 1 cut(s) | 365 |
| BspT107I | GGYRCC | 2 cut(s) | 93, 247 |
| BsrBI | CCGCTC | 1 cut(s) | 375 |
| BsrI | ACTGG | 2 cut(s) | 712, 758 |
| BssECI | CCNNGG | 2 cut(s) | 260, 732 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| BssT1I | CCWWGG | 1 cut(s) | 732 |
| Bst2UI | CCWGG | 4 cut(s) | 50, 537, 591, 780 |
| Bst4CI | ACNGT | 1 cut(s) | 475 |
| Bst6I | CTCTTC | 2 cut(s) | 365, 907 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 317, 414 |
| BstDEI | CTNAG | 5 cut(s) | 170, 555, 848, 884, 908 |
| BstF5I | GGATG | 4 cut(s) | 283, 545, 661, 742 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 251 |
| BstHHI | GCGC | 2 cut(s) | 250, 890 |
| BstMCI | CGRYCG | 1 cut(s) | 114 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 256 |
| BstNI | CCWGG | 4 cut(s) | 50, 537, 591, 780 |
| BstSCI | CCNGG | 6 cut(s) | 35, 48, 96, 535, 589, 778 |
| BstSFI | CTRYAG | 1 cut(s) | 600 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV1I | GCAGC | 2 cut(s) | 606, 614 |
| BstV2I | GAAGAC | 1 cut(s) | 341 |
| BstX2I | RGATCY | 5 cut(s) | 192, 430, 607, 826, 899 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 590 |
| BstYI | RGATCY | 5 cut(s) | 192, 430, 607, 826, 899 |
| Bsu36I | CCTNAGG | 1 cut(s) | 848 |
| BsuRI | GGCC | 3 cut(s) | 83, 134, 158 |
| BtrI | CACGTC | 2 cut(s) | 58, 202 |
| BtsCI | GGATG | 4 cut(s) | 283, 545, 661, 742 |
| BtsIMutI | CAGTG | 2 cut(s) | 178, 705 |
| Cac8I | GCNNGC | 2 cut(s) | 317, 414 |
| CfoI | GCGC | 2 cut(s) | 250, 890 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| CseI | GACGC | 1 cut(s) | 176 |
| Csp6I | GTAC | 3 cut(s) | 70, 205, 552 |
| CviAII | CATG | 2 cut(s) | 85, 638 |
| CviQI | GTAC | 3 cut(s) | 70, 205, 552 |
| DdeI | CTNAG | 5 cut(s) | 170, 555, 848, 884, 908 |
| DinI | GGCGCC | 1 cut(s) | 249 |
| EaeI | YGGCCR | 1 cut(s) | 81 |
| Eam1104I | CTCTTC | 2 cut(s) | 365, 907 |
| EarI | CTCTTC | 2 cut(s) | 365, 907 |
| EciI | GGCGGA | 2 cut(s) | 143, 363 |
| Eco130I | CCWWGG | 1 cut(s) | 732 |
| Eco147I | AGGCCT | 1 cut(s) | 158 |
| Eco32I | GATATC | 1 cut(s) | 529 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco57I | CTGAAG | 1 cut(s) | 47 |
| Eco81I | CCTNAGG | 1 cut(s) | 848 |
| Eco88I | CYCGRG | 1 cut(s) | 695 |
| EcoRII | CCWGG | 4 cut(s) | 48, 535, 589, 778 |
| EcoRV | GATATC | 1 cut(s) | 529 |
| EcoT14I | CCWWGG | 1 cut(s) | 732 |
| EgeI | GGCGCC | 1 cut(s) | 249 |
| EheI | GGCGCC | 1 cut(s) | 249 |
| ErhI | CCWWGG | 1 cut(s) | 732 |
| FaeI | CATG | 2 cut(s) | 88, 641 |
| FaiI | YATR | 6 cut(s) | 86, 151, 639, 681, 770, 786 |
| FaqI | GGGAC | 1 cut(s) | 231 |
| FatI | CATG | 2 cut(s) | 84, 637 |
| FblI | GTMKAC | 1 cut(s) | 114 |
| Fnu4HI | GCNGC | 6 cut(s) | 251, 254, 257, 396, 595, 603 |
| FokI | GGATG | 4 cut(s) | 290, 552, 668, 749 |
| Fsp4HI | GCNGC | 6 cut(s) | 251, 254, 257, 396, 595, 603 |
| FspBI | CTAG | 1 cut(s) | 920 |
| GlaI | GCGC | 2 cut(s) | 249, 889 |
| GluI | GCNGC | 6 cut(s) | 251, 254, 257, 396, 595, 603 |
| HaeII | RGCGCY | 1 cut(s) | 251 |
| HaeIII | GGCC | 3 cut(s) | 83, 134, 158 |
| HapII | CCGG | 5 cut(s) | 37, 98, 110, 275, 307 |
| HgaI | GACGC | 1 cut(s) | 176 |
| HhaI | GCGC | 2 cut(s) | 250, 890 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 2 cut(s) | 88, 641 |
| Hin6I | GCGC | 2 cut(s) | 248, 888 |
| HinP1I | GCGC | 2 cut(s) | 248, 888 |
| HincII | GTYRAC | 4 cut(s) | 10, 33, 115, 687 |
| HindII | GTYRAC | 4 cut(s) | 10, 33, 115, 687 |
| HinfI | GANTC | 2 cut(s) | 106, 364 |
| HpaI | GTTAAC | 1 cut(s) | 687 |
| HpaII | CCGG | 5 cut(s) | 37, 98, 110, 275, 307 |
| HphI | GGTGA | 2 cut(s) | 805, 935 |
| Hpy166II | GTNNAC | 6 cut(s) | 10, 33, 115, 205, 625, 687 |
| Hpy188I | TCNGA | 7 cut(s) | 27, 192, 271, 369, 726, 904, 909 |
| Hpy188III | TCNNGA | 6 cut(s) | 468, 479, 569, 649, 763, 850 |
| Hpy8I | GTNNAC | 6 cut(s) | 10, 33, 115, 205, 625, 687 |
| Hpy99I | CGWCG | 2 cut(s) | 203, 623 |
| HpyAV | CCTTC | 6 cut(s) | 58, 382, 444, 541, 568, 735 |
| HpyCH4III | ACNGT | 1 cut(s) | 475 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 201, 563 |
| HpyCH4V | TGCA | 1 cut(s) | 602 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 256 |
| HpyF3I | CTNAG | 5 cut(s) | 170, 555, 848, 884, 908 |
| HpySE526I | ACGT | 3 cut(s) | 57, 201, 563 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 2 cut(s) | 88, 641 |
| HspAI | GCGC | 2 cut(s) | 248, 888 |
| KasI | GGCGCC | 1 cut(s) | 247 |
| KspAI | GTTAAC | 1 cut(s) | 687 |
| LguI | GCTCTTC | 1 cut(s) | 365 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| Lsp1109I | GCAGC | 2 cut(s) | 606, 614 |
| MaeI | CTAG | 1 cut(s) | 920 |
| MaeII | ACGT | 3 cut(s) | 57, 201, 563 |
| MbiI | CCGCTC | 1 cut(s) | 375 |
| MboII | GAAGA | 6 cut(s) | 73, 346, 382, 397, 556, 924 |
| MfeI | CAATTG | 1 cut(s) | 504 |
| MflI | RGATCY | 5 cut(s) | 192, 430, 607, 826, 899 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MlsI | TGGCCA | 1 cut(s) | 83 |
| MluCI | AATT | 2 cut(s) | 484, 504 |
| MluNI | TGGCCA | 1 cut(s) | 83 |
| Mly113I | GGCGCC | 1 cut(s) | 248 |
| MlyI | GAGTC | 1 cut(s) | 373 |
| MmeI | TCCRAC | 1 cut(s) | 249 |
| Mox20I | TGGCCA | 1 cut(s) | 83 |
| MscI | TGGCCA | 1 cut(s) | 83 |
| MseI | TTAA | 4 cut(s) | 288, 330, 518, 686 |
| Msp20I | TGGCCA | 1 cut(s) | 83 |
| MspI | CCGG | 5 cut(s) | 37, 98, 110, 275, 307 |
| MspR9I | CCNGG | 6 cut(s) | 37, 50, 98, 537, 591, 780 |
| MunI | CAATTG | 1 cut(s) | 504 |
| Mva1269I | GAATGC | 1 cut(s) | 816 |
| MvaI | CCWGG | 4 cut(s) | 50, 537, 591, 780 |
| MvnI | CGCG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 256 |
| NarI | GGCGCC | 1 cut(s) | 248 |
| NciI | CCSGG | 2 cut(s) | 37, 98 |
| NlaIII | CATG | 2 cut(s) | 88, 641 |
| NlaIV | GGNNCC | 3 cut(s) | 95, 249, 273 |
| NmeAIII | GCCGAG | 1 cut(s) | 285 |
| PaeR7I | CTCGAG | 1 cut(s) | 695 |
| PceI | AGGCCT | 1 cut(s) | 158 |
| PciSI | GCTCTTC | 1 cut(s) | 365 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 207, 624 |
| PctI | GAATGC | 1 cut(s) | 816 |
| PfeI | GAWTC | 1 cut(s) | 106 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 90 |
| PkrI | GCNGC | 6 cut(s) | 252, 255, 258, 397, 596, 604 |
| PleI | GAGTC | 1 cut(s) | 372 |
| PluTI | GGCGCC | 1 cut(s) | 251 |
| PpsI | GAGTC | 1 cut(s) | 372 |
| Psp6I | CCWGG | 4 cut(s) | 48, 535, 589, 778 |
| PspGI | CCWGG | 4 cut(s) | 48, 535, 589, 778 |
| PspN4I | GGNNCC | 3 cut(s) | 95, 249, 273 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PspXI | VCTCGAGB | 1 cut(s) | 695 |
| PstI | CTGCAG | 1 cut(s) | 604 |
| PsuI | RGATCY | 5 cut(s) | 192, 430, 607, 826, 899 |
| RsaI | GTAC | 3 cut(s) | 71, 206, 553 |
| RsaNI | GTAC | 3 cut(s) | 70, 205, 552 |
| SalI | GTCGAC | 1 cut(s) | 113 |
| SapI | GCTCTTC | 1 cut(s) | 365 |
| SaqAI | TTAA | 4 cut(s) | 288, 330, 518, 686 |
| SatI | GCNGC | 6 cut(s) | 251, 254, 257, 396, 595, 603 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| SchI | GAGTC | 1 cut(s) | 373 |
| ScrFI | CCNGG | 6 cut(s) | 37, 50, 98, 537, 591, 780 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SfcI | CTRYAG | 1 cut(s) | 600 |
| SfoI | GGCGCC | 1 cut(s) | 249 |
| Sfr274I | CTCGAG | 1 cut(s) | 695 |
| SinI | GGWCC | 1 cut(s) | 304 |
| SlaI | CTCGAG | 1 cut(s) | 695 |
| SmlI | CTYRAG | 1 cut(s) | 695 |
| SmoI | CTYRAG | 1 cut(s) | 695 |
| Sse9I | AATT | 2 cut(s) | 484, 504 |
| SseBI | AGGCCT | 1 cut(s) | 158 |
| SsiI | CCGC | 9 cut(s) | 128, 179, 251, 254, 257, 348, 375, 395, 398 |
| SspDI | GGCGCC | 1 cut(s) | 247 |
| SspMI | CTAG | 1 cut(s) | 920 |
| StuI | AGGCCT | 1 cut(s) | 158 |
| StyD4I | CCNGG | 6 cut(s) | 35, 48, 96, 535, 589, 778 |
| StyI | CCWWGG | 1 cut(s) | 732 |
| TaaI | ACNGT | 1 cut(s) | 475 |
| TaiI | ACGT | 3 cut(s) | 60, 204, 566 |
| TaqI | TCGA | 4 cut(s) | 114, 467, 675, 696 |
| TasI | AATT | 2 cut(s) | 484, 504 |
| TauI | GCSGC | 4 cut(s) | 253, 256, 259, 398 |
| TfiI | GAWTC | 1 cut(s) | 106 |
| Tru1I | TTAA | 4 cut(s) | 288, 330, 518, 686 |
| Tru9I | TTAA | 4 cut(s) | 288, 330, 518, 686 |
| TscAI | CASTG | 2 cut(s) | 178, 712 |
| TseI | GCWGC | 2 cut(s) | 594, 602 |
| TspDTI | ATGAA | 1 cut(s) | 101 |
| TspRI | CASTG | 2 cut(s) | 178, 712 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 90 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XhoI | CTCGAG | 1 cut(s) | 695 |
| XmiI | GTMKAC | 1 cut(s) | 114 |
| XspI | CTAG | 1 cut(s) | 920 |