ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1519 |
| AccB1I | GGYRCC | 1 cut(s) | 1492 |
| AciI | CCGC | 6 cut(s) | 104, 177, 200, 253, 360, 1078 |
| AclWI | GGATC | 3 cut(s) | 131, 694, 1018 |
| AcoI | YGGCCR | 4 cut(s) | 250, 1025, 1075, 1572 |
| AcsI | RAATTY | 2 cut(s) | 382, 809 |
| AcuI | CTGAAG | 1 cut(s) | 1315 |
| AfaI | GTAC | 3 cut(s) | 206, 679, 1643 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 206, 237, 710, 917, 1538, 1748 |
| AjnI | CCWGG | 6 cut(s) | 139, 316, 799, 1134, 1141, 1630 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1179, 1211 |
| Alw21I | GWGCWC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| Alw26I | GTCTC | 1 cut(s) | 445 |
| Alw44I | GTGCAC | 1 cut(s) | 321 |
| AlwI | GGATC | 3 cut(s) | 131, 694, 1018 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 454 |
| AoxI | GGCC | 9 cut(s) | 105, 197, 250, 426, 1025, 1075, 1572, 1739, 1877 |
| ApaLI | GTGCAC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 6 cut(s) | 63, 74, 890, 966, 1503, 1773 |
| ApoI | RAATTY | 2 cut(s) | 382, 809 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| AspS9I | GGNCC | 4 cut(s) | 908, 1739, 1859, 1877 |
| AsuC2I | CCSGG | 4 cut(s) | 378, 684, 1088, 1215 |
| AsuHPI | GGTGA | 5 cut(s) | 71, 470, 601, 1172, 1429 |
| AvaII | GGWCC | 2 cut(s) | 908, 1859 |
| BaeGI | GKGCMC | 1 cut(s) | 325 |
| BalI | TGGCCA | 2 cut(s) | 1027, 1574 |
| BanI | GGYRCC | 1 cut(s) | 1492 |
| BanII | GRGCYC | 3 cut(s) | 670, 763, 1594 |
| Bbv12I | GWGCWC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| BbvI | GCAGC | 6 cut(s) | 50, 61, 877, 978, 1490, 1785 |
| BccI | CCATC | 5 cut(s) | 242, 1059, 1067, 1157, 1796 |
| BceAI | ACGGC | 2 cut(s) | 187, 413 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 6 cut(s) | 141, 318, 801, 1136, 1143, 1632 |
| BclI | TGATCA | 1 cut(s) | 1419 |
| BcnI | CCSGG | 4 cut(s) | 378, 684, 1088, 1215 |
| BcoDI | GTCTC | 1 cut(s) | 445 |
| BfaI | CTAG | 3 cut(s) | 740, 999, 1838 |
| BfmI | CTRYAG | 2 cut(s) | 393, 1512 |
| BfuAI | ACCTGC | 1 cut(s) | 1519 |
| BglII | AGATCT | 2 cut(s) | 561, 1225 |
| BlpI | GCTNAGC | 1 cut(s) | 1842 |
| BmcAI | AGTACT | 1 cut(s) | 1643 |
| Bme18I | GGWCC | 2 cut(s) | 908, 1859 |
| BmgT120I | GGNCC | 4 cut(s) | 908, 1739, 1859, 1877 |
| BmiI | GGNNCC | 4 cut(s) | 1140, 1168, 1494, 1878 |
| BmrI | ACTGGG | 4 cut(s) | 452, 464, 969, 1776 |
| BmsI | GCATC | 1 cut(s) | 1282 |
| BmuI | ACTGGG | 4 cut(s) | 452, 464, 969, 1776 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1842 |
| BpuEI | CTTGAG | 1 cut(s) | 1592 |
| BpuMI | CCSGG | 4 cut(s) | 378, 684, 1088, 1215 |
| BsaJI | CCNNGG | 2 cut(s) | 140, 429 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 354, 384, 1179, 1209 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 206, 237, 710, 917, 1538, 1748 |
| Bse118I | RCCGGY | 1 cut(s) | 187 |
| Bse1I | ACTGG | 7 cut(s) | 238, 447, 459, 606, 975, 1063, 1782 |
| Bse3DI | GCAATG | 3 cut(s) | 591, 768, 949 |
| BseBI | CCWGG | 6 cut(s) | 141, 318, 801, 1136, 1143, 1632 |
| BseDI | CCNNGG | 2 cut(s) | 140, 429 |
| BseGI | GGATG | 2 cut(s) | 680, 1051 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 206, 237, 710, 917, 1538, 1748 |
| BseMI | GCAATG | 3 cut(s) | 591, 768, 949 |
| BseMII | CTCAG | 3 cut(s) | 58, 1115, 1833 |
| BseNI | ACTGG | 7 cut(s) | 238, 447, 459, 606, 975, 1063, 1782 |
| BseRI | GAGGAG | 1 cut(s) | 1374 |
| BseSI | GKGCMC | 1 cut(s) | 325 |
| BseXI | GCAGC | 6 cut(s) | 50, 61, 877, 978, 1490, 1785 |
| BseYI | CCCAGC | 2 cut(s) | 481, 1309 |
| BshFI | GGCC | 9 cut(s) | 107, 199, 252, 428, 1027, 1077, 1574, 1741, 1879 |
| BshNI | GGYRCC | 1 cut(s) | 1492 |
| BsiHKAI | GWGCWC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| BsiSI | CCGG | 6 cut(s) | 188, 378, 683, 1088, 1185, 1215 |
| BsiWI | CGTACG | 1 cut(s) | 204 |
| BslFI | GGGAC | 9 cut(s) | 137, 245, 857, 961, 1070, 1268, 1688, 1717, 1765 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 206, 237, 710, 917, 1538, 1748 |
| BsmAI | GTCTC | 1 cut(s) | 445 |
| BsmFI | GGGAC | 9 cut(s) | 137, 245, 857, 961, 1070, 1268, 1688, 1717, 1765 |
| BsmI | GAATGC | 1 cut(s) | 1000 |
| BsnI | GGCC | 9 cut(s) | 107, 199, 252, 428, 1027, 1077, 1574, 1741, 1879 |
| Bsp1286I | GDGCHC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| Bsp1407I | TGTACA | 1 cut(s) | 677 |
| Bsp143I | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1842 |
| BspACI | CCGC | 6 cut(s) | 104, 177, 200, 253, 360, 1078 |
| BspANI | GGCC | 9 cut(s) | 107, 199, 252, 428, 1027, 1077, 1574, 1741, 1879 |
| BspCNI | CTCAG | 3 cut(s) | 57, 1114, 1834 |
| BspLI | GGNNCC | 4 cut(s) | 1140, 1168, 1494, 1878 |
| BspMAI | CTGCAG | 1 cut(s) | 1516 |
| BspMI | ACCTGC | 1 cut(s) | 1519 |
| BspPI | GGATC | 3 cut(s) | 131, 694, 1018 |
| BspQI | GCTCTTC | 1 cut(s) | 785 |
| BspT107I | GGYRCC | 1 cut(s) | 1492 |
| BsrDI | GCAATG | 3 cut(s) | 591, 768, 949 |
| BsrFI | RCCGGY | 1 cut(s) | 187 |
| BsrGI | TGTACA | 1 cut(s) | 677 |
| BsrI | ACTGG | 7 cut(s) | 238, 447, 459, 606, 975, 1063, 1782 |
| BssAI | RCCGGY | 1 cut(s) | 187 |
| BssECI | CCNNGG | 2 cut(s) | 140, 429 |
| BssMI | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| Bst2UI | CCWGG | 6 cut(s) | 141, 318, 801, 1136, 1143, 1632 |
| Bst4CI | ACNGT | 3 cut(s) | 20, 40, 576 |
| Bst6I | CTCTTC | 1 cut(s) | 785 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstAUI | TGTACA | 1 cut(s) | 677 |
| BstC8I | GCNNGC | 1 cut(s) | 1572 |
| BstDEI | CTNAG | 4 cut(s) | 44, 276, 1101, 1842 |
| BstDSI | CCRYGG | 1 cut(s) | 429 |
| BstF5I | GGATG | 2 cut(s) | 680, 1051 |
| BstKTI | GATC | 6 cut(s) | 139, 564, 689, 1013, 1228, 1422 |
| BstMAI | GTCTC | 1 cut(s) | 445 |
| BstMBI | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 60, 182, 281, 1106 |
| BstNI | CCWGG | 6 cut(s) | 141, 318, 801, 1136, 1143, 1632 |
| BstSFI | CTRYAG | 2 cut(s) | 393, 1512 |
| BstSLI | GKGCMC | 1 cut(s) | 325 |
| BstV1I | GCAGC | 6 cut(s) | 50, 61, 877, 978, 1490, 1785 |
| BstX2I | RGATCY | 2 cut(s) | 561, 1225 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1058 |
| BstYI | RGATCY | 2 cut(s) | 561, 1225 |
| BsuRI | GGCC | 9 cut(s) | 107, 199, 252, 428, 1027, 1077, 1574, 1741, 1879 |
| BtgI | CCRYGG | 1 cut(s) | 429 |
| BtsCI | GGATG | 2 cut(s) | 680, 1051 |
| BtsI | GCAGTG | 4 cut(s) | 910, 1268, 1419, 1521 |
| BveI | ACCTGC | 1 cut(s) | 1519 |
| Cac8I | GCNNGC | 1 cut(s) | 1572 |
| CaiI | CAGNNNCTG | 1 cut(s) | 454 |
| Cfr10I | RCCGGY | 1 cut(s) | 187 |
| Cfr13I | GGNCC | 4 cut(s) | 908, 1739, 1859, 1877 |
| CsiI | ACCWGGT | 2 cut(s) | 316, 1141 |
| Csp6I | GTAC | 3 cut(s) | 205, 678, 1642 |
| CviAII | CATG | 1 cut(s) | 1258 |
| CviQI | GTAC | 3 cut(s) | 205, 678, 1642 |
| DdeI | CTNAG | 4 cut(s) | 44, 276, 1101, 1842 |
| DpnI | GATC | 6 cut(s) | 138, 563, 688, 1012, 1227, 1421 |
| DpnII | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| EaeI | YGGCCR | 4 cut(s) | 250, 1025, 1075, 1572 |
| Eam1104I | CTCTTC | 1 cut(s) | 785 |
| EarI | CTCTTC | 1 cut(s) | 785 |
| EciI | GGCGGA | 1 cut(s) | 375 |
| Ecl136II | GAGCTC | 3 cut(s) | 668, 761, 1592 |
| Eco24I | GRGCYC | 3 cut(s) | 670, 763, 1594 |
| Eco47I | GGWCC | 2 cut(s) | 908, 1859 |
| Eco53kI | GAGCTC | 3 cut(s) | 668, 761, 1592 |
| Eco57I | CTGAAG | 1 cut(s) | 1315 |
| EcoICRI | GAGCTC | 3 cut(s) | 668, 761, 1592 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1739, 1877 |
| EcoRII | CCWGG | 6 cut(s) | 139, 316, 799, 1134, 1141, 1630 |
| EcoT38I | GRGCYC | 3 cut(s) | 670, 763, 1594 |
| FaeI | CATG | 1 cut(s) | 1261 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 30, 92, 124 |
| FaqI | GGGAC | 9 cut(s) | 137, 245, 857, 961, 1070, 1268, 1688, 1717, 1765 |
| FatI | CATG | 1 cut(s) | 1257 |
| FauNDI | CATATG | 2 cut(s) | 955, 1030 |
| FbaI | TGATCA | 1 cut(s) | 1419 |
| FokI | GGATG | 2 cut(s) | 687, 1038 |
| FriOI | GRGCYC | 3 cut(s) | 670, 763, 1594 |
| FspBI | CTAG | 3 cut(s) | 740, 999, 1838 |
| GsaI | CCCAGC | 2 cut(s) | 485, 1313 |
| HaeIII | GGCC | 9 cut(s) | 107, 199, 252, 428, 1027, 1077, 1574, 1741, 1879 |
| HapII | CCGG | 6 cut(s) | 188, 378, 683, 1088, 1185, 1215 |
| Hin1II | CATG | 1 cut(s) | 1261 |
| HincII | GTYRAC | 1 cut(s) | 1684 |
| HindII | GTYRAC | 1 cut(s) | 1684 |
| HindIII | AAGCTT | 1 cut(s) | 287 |
| HinfI | GANTC | 8 cut(s) | 125, 700, 728, 747, 804, 849, 1065, 1635 |
| HpaI | GTTAAC | 1 cut(s) | 1684 |
| HpaII | CCGG | 6 cut(s) | 188, 378, 683, 1088, 1185, 1215 |
| HphI | GGTGA | 5 cut(s) | 71, 470, 601, 1172, 1429 |
| Hpy166II | GTNNAC | 5 cut(s) | 323, 680, 908, 1684, 1859 |
| Hpy188I | TCNGA | 6 cut(s) | 247, 389, 657, 1072, 1278, 1485 |
| Hpy188III | TCNNGA | 8 cut(s) | 690, 704, 778, 1423, 1524, 1532, 1553, 1609 |
| Hpy8I | GTNNAC | 5 cut(s) | 323, 680, 908, 1684, 1859 |
| HpyAV | CCTTC | 7 cut(s) | 633, 784, 870, 880, 1001, 1461, 1872 |
| HpyCH4III | ACNGT | 3 cut(s) | 20, 40, 576 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 60, 182, 281, 1106 |
| HpyF3I | CTNAG | 4 cut(s) | 44, 276, 1101, 1842 |
| Hsp92II | CATG | 1 cut(s) | 1261 |
| Ksp22I | TGATCA | 1 cut(s) | 1419 |
| KspAI | GTTAAC | 1 cut(s) | 1684 |
| Kzo9I | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| LguI | GCTCTTC | 1 cut(s) | 785 |
| LmnI | GCTCC | 5 cut(s) | 362, 389, 665, 1187, 1387 |
| Lsp1109I | GCAGC | 6 cut(s) | 50, 61, 877, 978, 1490, 1785 |
| LweI | GCATC | 1 cut(s) | 1282 |
| MabI | ACCWGGT | 2 cut(s) | 316, 1141 |
| MaeI | CTAG | 3 cut(s) | 740, 999, 1838 |
| MaeIII | GTNAC | 5 cut(s) | 34, 438, 977, 1266, 1870 |
| MalI | GATC | 6 cut(s) | 138, 563, 688, 1012, 1227, 1421 |
| MboI | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| MboII | GAAGA | 8 cut(s) | 737, 802, 844, 1106, 1220, 1273, 1321, 1568 |
| MfeI | CAATTG | 2 cut(s) | 410, 837 |
| MflI | RGATCY | 2 cut(s) | 561, 1225 |
| MhlI | GDGCHC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| MlsI | TGGCCA | 2 cut(s) | 1027, 1574 |
| MluNI | TGGCCA | 2 cut(s) | 1027, 1574 |
| MlyI | GAGTC | 2 cut(s) | 119, 741 |
| MmeI | TCCRAC | 1 cut(s) | 1858 |
| Mox20I | TGGCCA | 2 cut(s) | 1027, 1574 |
| MscI | TGGCCA | 2 cut(s) | 1027, 1574 |
| MseI | TTAA | 6 cut(s) | 423, 734, 1299, 1356, 1565, 1683 |
| Msp20I | TGGCCA | 2 cut(s) | 1027, 1574 |
| MspI | CCGG | 6 cut(s) | 188, 378, 683, 1088, 1185, 1215 |
| MunI | CAATTG | 2 cut(s) | 410, 837 |
| Mva1269I | GAATGC | 1 cut(s) | 1000 |
| MvaI | CCWGG | 6 cut(s) | 141, 318, 801, 1136, 1143, 1632 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 60, 182, 281, 1106 |
| NciI | CCSGG | 4 cut(s) | 378, 684, 1088, 1215 |
| NdeI | CATATG | 2 cut(s) | 955, 1030 |
| NdeII | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| NlaIII | CATG | 1 cut(s) | 1261 |
| NlaIV | GGNNCC | 4 cut(s) | 1140, 1168, 1494, 1878 |
| NmuCI | GTSAC | 4 cut(s) | 438, 977, 1266, 1870 |
| PciSI | GCTCTTC | 1 cut(s) | 785 |
| PctI | GAATGC | 1 cut(s) | 1000 |
| PfeI | GAWTC | 6 cut(s) | 700, 728, 804, 849, 1065, 1635 |
| Pfl23II | CGTACG | 1 cut(s) | 204 |
| PflFI | GACNNNGTC | 1 cut(s) | 341 |
| PfoI | TCCNGGA | 2 cut(s) | 376, 1086 |
| PleI | GAGTC | 2 cut(s) | 119, 741 |
| PpsI | GAGTC | 2 cut(s) | 119, 741 |
| Psp124BI | GAGCTC | 3 cut(s) | 670, 763, 1594 |
| Psp6I | CCWGG | 6 cut(s) | 139, 316, 799, 1134, 1141, 1630 |
| PspFI | CCCAGC | 2 cut(s) | 481, 1309 |
| PspGI | CCWGG | 6 cut(s) | 139, 316, 799, 1134, 1141, 1630 |
| PspLI | CGTACG | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 4 cut(s) | 1140, 1168, 1494, 1878 |
| PspPI | GGNCC | 4 cut(s) | 908, 1739, 1859, 1877 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 137, 169 |
| PstI | CTGCAG | 1 cut(s) | 1516 |
| PstNI | CAGNNNCTG | 1 cut(s) | 454 |
| PsuI | RGATCY | 2 cut(s) | 561, 1225 |
| PsyI | GACNNNGTC | 1 cut(s) | 341 |
| RsaI | GTAC | 3 cut(s) | 206, 679, 1643 |
| RsaNI | GTAC | 3 cut(s) | 205, 678, 1642 |
| SacI | GAGCTC | 3 cut(s) | 670, 763, 1594 |
| SapI | GCTCTTC | 1 cut(s) | 785 |
| SaqAI | TTAA | 6 cut(s) | 423, 734, 1299, 1356, 1565, 1683 |
| Sau3AI | GATC | 6 cut(s) | 136, 561, 686, 1010, 1225, 1419 |
| Sau96I | GGNCC | 4 cut(s) | 908, 1739, 1859, 1877 |
| ScaI | AGTACT | 1 cut(s) | 1643 |
| SchI | GAGTC | 2 cut(s) | 119, 741 |
| SduI | GDGCHC | 7 cut(s) | 325, 615, 670, 763, 1150, 1443, 1594 |
| SexAI | ACCWGGT | 2 cut(s) | 316, 1141 |
| SfaNI | GCATC | 1 cut(s) | 1282 |
| SfcI | CTRYAG | 2 cut(s) | 393, 1512 |
| SinI | GGWCC | 2 cut(s) | 908, 1859 |
| SmlI | CTYRAG | 1 cut(s) | 1607 |
| SmoI | CTYRAG | 1 cut(s) | 1607 |
| SsiI | CCGC | 6 cut(s) | 104, 177, 200, 253, 360, 1078 |
| SspI | AATATT | 2 cut(s) | 1650, 1910 |
| SspMI | CTAG | 3 cut(s) | 740, 999, 1838 |
| SstI | GAGCTC | 3 cut(s) | 670, 763, 1594 |
| TaaI | ACNGT | 3 cut(s) | 20, 40, 576 |
| TaqI | TCGA | 3 cut(s) | 689, 1047, 1063 |
| TatI | WGTACW | 2 cut(s) | 677, 1641 |
| TauI | GCSGC | 5 cut(s) | 107, 179, 202, 255, 1080 |
| TfiI | GAWTC | 6 cut(s) | 700, 728, 804, 849, 1065, 1635 |
| Tru1I | TTAA | 6 cut(s) | 423, 734, 1299, 1356, 1565, 1683 |
| Tru9I | TTAA | 6 cut(s) | 423, 734, 1299, 1356, 1565, 1683 |
| TseFI | GTSAC | 4 cut(s) | 438, 977, 1266, 1870 |
| TseI | GCWGC | 6 cut(s) | 63, 74, 890, 966, 1503, 1773 |
| Tsp45I | GTSAC | 4 cut(s) | 438, 977, 1266, 1870 |
| TspDTI | ATGAA | 6 cut(s) | 738, 757, 972, 1274, 1712, 1904 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| Tth111I | GACNNNGTC | 1 cut(s) | 341 |
| VneI | GTGCAC | 1 cut(s) | 321 |
| VpaK11BI | GGWCC | 2 cut(s) | 908, 1859 |
| XapI | RAATTY | 2 cut(s) | 382, 809 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 478 |
| XspI | CTAG | 3 cut(s) | 740, 999, 1838 |
| ZrmI | AGTACT | 1 cut(s) | 1643 |