ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CAP | PF00188 | 30 - 147 | 2.2e-16 | Cysteine-rich secretory protein family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 282 |
| AccII | CGCG | 1 cut(s) | 266 |
| AciI | CCGC | 7 cut(s) | 156, 249, 264, 266, 272, 290, 333 |
| AclWI | GGATC | 1 cut(s) | 47 |
| AcoI | YGGCCR | 2 cut(s) | 261, 273 |
| AcsI | RAATTY | 2 cut(s) | 232, 412 |
| AcuI | CTGAAG | 1 cut(s) | 188 |
| AfaI | GTAC | 2 cut(s) | 96, 173 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 183, 282 |
| AgsI | TTSAA | 1 cut(s) | 404 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 1 cut(s) | 438 |
| AluI | AGCT | 1 cut(s) | 438 |
| Alw21I | GWGCWC | 1 cut(s) | 115 |
| AlwI | GGATC | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 1 cut(s) | 108 |
| AoxI | GGCC | 3 cut(s) | 218, 261, 273 |
| ApeKI | GCWGC | 4 cut(s) | 246, 269, 435, 466 |
| ApoI | RAATTY | 2 cut(s) | 232, 412 |
| AspLEI | GCGC | 1 cut(s) | 471 |
| AspS9I | GGNCC | 1 cut(s) | 218 |
| AsuC2I | CCSGG | 1 cut(s) | 68 |
| AsuHPI | GGTGA | 1 cut(s) | 66 |
| AvaI | CYCGRG | 1 cut(s) | 108 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 287, 319 |
| BauI | CACGAG | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 1 cut(s) | 115 |
| BbvI | GCAGC | 3 cut(s) | 256, 258, 447 |
| BceAI | ACGGC | 2 cut(s) | 241, 276 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 442, 476 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BcnI | CCSGG | 1 cut(s) | 68 |
| BfaI | CTAG | 2 cut(s) | 188, 396 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BisI | GCNGC | 9 cut(s) | 156, 247, 250, 264, 267, 270, 273, 436, 467 |
| BlsI | GCNGC | 9 cut(s) | 157, 248, 251, 265, 268, 271, 274, 437, 468 |
| Bme1390I | CCNGG | 2 cut(s) | 68, 450 |
| BmeT110I | CYCGRG | 1 cut(s) | 108 |
| BmgT120I | GGNCC | 1 cut(s) | 218 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmrFI | CCNGG | 2 cut(s) | 68, 450 |
| BpuEI | CTTGAG | 1 cut(s) | 342 |
| BpuMI | CCSGG | 1 cut(s) | 68 |
| BsaBI | GATNNNNATC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 264 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 299, 329 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 183, 282 |
| Bse118I | RCCGGY | 1 cut(s) | 329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 198 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 1 cut(s) | 264 |
| BseJI | GATNNNNATC | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 183, 282 |
| BseMII | CTCAG | 1 cut(s) | 225 |
| BseX3I | CGGCCG | 1 cut(s) | 261 |
| BseXI | GCAGC | 3 cut(s) | 256, 258, 447 |
| BsgI | GTGCAG | 1 cut(s) | 364 |
| Bsh1236I | CGCG | 1 cut(s) | 266 |
| Bsh1285I | CGRYCG | 1 cut(s) | 264 |
| BshFI | GGCC | 3 cut(s) | 220, 263, 275 |
| BsiEI | CGRYCG | 1 cut(s) | 264 |
| BsiHKAI | GWGCWC | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 108 |
| BsiSI | CCGG | 2 cut(s) | 67, 330 |
| BslFI | GGGAC | 2 cut(s) | 83, 155 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 183, 282 |
| BsmFI | GGGAC | 2 cut(s) | 83, 155 |
| BsnI | GGCC | 3 cut(s) | 220, 263, 275 |
| BsoBI | CYCGRG | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 115 |
| Bsp1407I | TGTACA | 1 cut(s) | 94 |
| Bsp143I | GATC | 1 cut(s) | 52 |
| BspACI | CCGC | 7 cut(s) | 156, 249, 264, 266, 272, 290, 333 |
| BspANI | GGCC | 3 cut(s) | 220, 263, 275 |
| BspCNI | CTCAG | 1 cut(s) | 224 |
| BspFNI | CGCG | 1 cut(s) | 266 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 47 |
| BsrFI | RCCGGY | 1 cut(s) | 329 |
| BsrGI | TGTACA | 1 cut(s) | 94 |
| BssAI | RCCGGY | 1 cut(s) | 329 |
| BssECI | CCNNGG | 1 cut(s) | 264 |
| BssMI | GATC | 1 cut(s) | 52 |
| BssSI | CACGAG | 1 cut(s) | 114 |
| Bst2BI | CACGAG | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstAUI | TGTACA | 1 cut(s) | 94 |
| BstC8I | GCNNGC | 2 cut(s) | 325, 347 |
| BstDEI | CTNAG | 1 cut(s) | 211 |
| BstDSI | CCRYGG | 1 cut(s) | 264 |
| BstFNI | CGCG | 1 cut(s) | 266 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 1 cut(s) | 471 |
| BstKTI | GATC | 1 cut(s) | 55 |
| BstMBI | GATC | 1 cut(s) | 52 |
| BstMCI | CGRYCG | 1 cut(s) | 264 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 161, 269, 272, 346 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstNSI | RCATGY | 1 cut(s) | 435 |
| BstSCI | CCNGG | 2 cut(s) | 66, 448 |
| BstUI | CGCG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 3 cut(s) | 256, 258, 447 |
| BstZI | CGGCCG | 1 cut(s) | 261 |
| BsuRI | GGCC | 3 cut(s) | 220, 263, 275 |
| BtgI | CCRYGG | 1 cut(s) | 264 |
| BtsI | GCAGTG | 1 cut(s) | 347 |
| BtsIMutI | CAGTG | 2 cut(s) | 147, 347 |
| Cac8I | GCNNGC | 2 cut(s) | 325, 347 |
| CfoI | GCGC | 1 cut(s) | 471 |
| Cfr10I | RCCGGY | 1 cut(s) | 329 |
| Cfr13I | GGNCC | 1 cut(s) | 218 |
| Cfr42I | CCGCGG | 1 cut(s) | 267 |
| Csp6I | GTAC | 2 cut(s) | 95, 172 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 347, 382 |
| CviAII | CATG | 2 cut(s) | 62, 432 |
| CviQI | GTAC | 2 cut(s) | 95, 172 |
| DdeI | CTNAG | 1 cut(s) | 211 |
| DpnI | GATC | 1 cut(s) | 54 |
| DpnII | GATC | 1 cut(s) | 52 |
| EaeI | YGGCCR | 2 cut(s) | 261, 273 |
| EagI | CGGCCG | 1 cut(s) | 261 |
| EciI | GGCGGA | 2 cut(s) | 305, 348 |
| EclXI | CGGCCG | 1 cut(s) | 261 |
| Eco52I | CGGCCG | 1 cut(s) | 261 |
| Eco57I | CTGAAG | 1 cut(s) | 188 |
| Eco88I | CYCGRG | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 1 cut(s) | 218 |
| EcoRI | GAATTC | 1 cut(s) | 412 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| FaeI | CATG | 2 cut(s) | 65, 435 |
| FaiI | YATR | 7 cut(s) | 27, 63, 99, 281, 354, 433, 475 |
| FaqI | GGGAC | 2 cut(s) | 83, 155 |
| FatI | CATG | 2 cut(s) | 61, 431 |
| Fnu4HI | GCNGC | 9 cut(s) | 156, 247, 250, 264, 267, 270, 273, 436, 467 |
| Fsp4HI | GCNGC | 9 cut(s) | 156, 247, 250, 264, 267, 270, 273, 436, 467 |
| FspBI | CTAG | 2 cut(s) | 188, 396 |
| GlaI | GCGC | 1 cut(s) | 470 |
| GluI | GCNGC | 9 cut(s) | 156, 247, 250, 264, 267, 270, 273, 436, 467 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HaeIII | GGCC | 3 cut(s) | 220, 263, 275 |
| HapII | CCGG | 2 cut(s) | 67, 330 |
| HhaI | GCGC | 1 cut(s) | 471 |
| Hin1II | CATG | 2 cut(s) | 65, 435 |
| Hin6I | GCGC | 1 cut(s) | 469 |
| HinP1I | GCGC | 1 cut(s) | 469 |
| HinfI | GANTC | 2 cut(s) | 10, 71 |
| HpaII | CCGG | 2 cut(s) | 67, 330 |
| HphI | GGTGA | 1 cut(s) | 66 |
| Hpy166II | GTNNAC | 3 cut(s) | 174, 208, 258 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 2 cut(s) | 50, 213 |
| Hpy8I | GTNNAC | 3 cut(s) | 174, 208, 258 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 5 cut(s) | 198, 327, 345, 408, 435 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 161, 269, 272, 346 |
| HpyF3I | CTNAG | 1 cut(s) | 211 |
| Hsp92II | CATG | 2 cut(s) | 65, 435 |
| HspAI | GCGC | 1 cut(s) | 469 |
| KspI | CCGCGG | 1 cut(s) | 267 |
| Kzo9I | GATC | 1 cut(s) | 52 |
| LpnPI | CCDG | 8 cut(s) | 63, 80, 198, 331, 343, 394, 435, 462 |
| Lsp1109I | GCAGC | 3 cut(s) | 256, 258, 447 |
| MaeI | CTAG | 2 cut(s) | 188, 396 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 1 cut(s) | 54 |
| MboI | GATC | 1 cut(s) | 52 |
| MhlI | GDGCHC | 1 cut(s) | 115 |
| MluCI | AATT | 2 cut(s) | 232, 412 |
| MlyI | GAGTC | 1 cut(s) | 65 |
| MnlI | CCTC | 5 cut(s) | 67, 98, 177, 209, 325 |
| MspA1I | CMGCKG | 2 cut(s) | 249, 266 |
| MspI | CCGG | 2 cut(s) | 67, 330 |
| MspR9I | CCNGG | 2 cut(s) | 68, 450 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MvnI | CGCG | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 161, 269, 272, 346 |
| NciI | CCSGG | 1 cut(s) | 68 |
| NdeII | GATC | 1 cut(s) | 52 |
| NlaIII | CATG | 2 cut(s) | 65, 435 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| NspI | RCATGY | 1 cut(s) | 435 |
| PaeR7I | CTCGAG | 1 cut(s) | 108 |
| PfeI | GAWTC | 1 cut(s) | 10 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 282 |
| PfoI | TCCNGGA | 1 cut(s) | 66 |
| PkrI | GCNGC | 9 cut(s) | 157, 248, 251, 265, 268, 271, 274, 437, 468 |
| PleI | GAGTC | 1 cut(s) | 65 |
| PpsI | GAGTC | 1 cut(s) | 65 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PspPI | GGNCC | 1 cut(s) | 218 |
| PspXI | VCTCGAGB | 1 cut(s) | 108 |
| RsaI | GTAC | 2 cut(s) | 96, 173 |
| RsaNI | GTAC | 2 cut(s) | 95, 172 |
| SacII | CCGCGG | 1 cut(s) | 267 |
| SatI | GCNGC | 9 cut(s) | 156, 247, 250, 264, 267, 270, 273, 436, 467 |
| Sau3AI | GATC | 1 cut(s) | 52 |
| Sau96I | GGNCC | 1 cut(s) | 218 |
| SchI | GAGTC | 1 cut(s) | 65 |
| ScrFI | CCNGG | 2 cut(s) | 68, 450 |
| SduI | GDGCHC | 1 cut(s) | 115 |
| SetI | ASST | 4 cut(s) | 90, 140, 317, 440 |
| Sfr274I | CTCGAG | 1 cut(s) | 108 |
| Sfr303I | CCGCGG | 1 cut(s) | 267 |
| SgrAI | CRCCGGYG | 1 cut(s) | 329 |
| SgrBI | CCGCGG | 1 cut(s) | 267 |
| SlaI | CTCGAG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 2 cut(s) | 108, 357 |
| SmoI | CTYRAG | 2 cut(s) | 108, 357 |
| Sse9I | AATT | 2 cut(s) | 232, 412 |
| SsiI | CCGC | 7 cut(s) | 156, 249, 264, 266, 272, 290, 333 |
| SspMI | CTAG | 2 cut(s) | 188, 396 |
| StyD4I | CCNGG | 2 cut(s) | 66, 448 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaqI | TCGA | 2 cut(s) | 109, 182 |
| TasI | AATT | 2 cut(s) | 232, 412 |
| TatI | WGTACW | 2 cut(s) | 94, 171 |
| TauI | GCSGC | 5 cut(s) | 158, 252, 266, 269, 275 |
| TfiI | GAWTC | 1 cut(s) | 10 |
| TscAI | CASTG | 2 cut(s) | 154, 347 |
| TseI | GCWGC | 4 cut(s) | 246, 269, 435, 466 |
| TspRI | CASTG | 2 cut(s) | 154, 347 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 282 |
| XapI | RAATTY | 2 cut(s) | 232, 412 |
| XceI | RCATGY | 1 cut(s) | 435 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |
| XhoI | CTCGAG | 1 cut(s) | 108 |
| XspI | CTAG | 2 cut(s) | 188, 396 |