Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 42 - 161 | 8.9e-20 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 161, 356 |
| AcoI | YGGCCR | 1 cut(s) | 484 |
| AcsI | RAATTY | 1 cut(s) | 518 |
| AcuI | CTGAAG | 1 cut(s) | 53 |
| AfaI | GTAC | 1 cut(s) | 201 |
| AflIII | ACRYGT | 1 cut(s) | 304 |
| AluBI | AGCT | 6 cut(s) | 68, 147, 272, 280, 376, 504 |
| AluI | AGCT | 6 cut(s) | 68, 147, 272, 280, 376, 504 |
| Alw26I | GTCTC | 1 cut(s) | 288 |
| AoxI | GGCC | 2 cut(s) | 154, 484 |
| ApeKI | GCWGC | 2 cut(s) | 373, 461 |
| ApoI | RAATTY | 1 cut(s) | 518 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| AsuNHI | GCTAGC | 1 cut(s) | 280 |
| BbsI | GAAGAC | 1 cut(s) | 423 |
| BbvI | GCAGC | 2 cut(s) | 385, 473 |
| BccI | CCATC | 1 cut(s) | 125 |
| BceAI | ACGGC | 1 cut(s) | 499 |
| BcoDI | GTCTC | 1 cut(s) | 288 |
| BfaI | CTAG | 2 cut(s) | 60, 281 |
| BisI | GCNGC | 3 cut(s) | 356, 374, 462 |
| BlsI | GCNGC | 3 cut(s) | 357, 375, 463 |
| BmcAI | AGTACT | 1 cut(s) | 201 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 2 cut(s) | 103, 408 |
| BmtI | GCTAGC | 1 cut(s) | 284 |
| BpiI | GAAGAC | 1 cut(s) | 423 |
| Bpu10I | CCTNAGC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 368 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 382, 412 |
| Bse1I | ACTGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 368 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseNI | ACTGG | 1 cut(s) | 302 |
| BseXI | GCAGC | 2 cut(s) | 385, 473 |
| BshFI | GGCC | 2 cut(s) | 156, 486 |
| BslFI | GGGAC | 1 cut(s) | 32 |
| BsmAI | GTCTC | 1 cut(s) | 288 |
| BsmFI | GGGAC | 1 cut(s) | 32 |
| BsnI | GGCC | 2 cut(s) | 156, 486 |
| BspACI | CCGC | 2 cut(s) | 161, 356 |
| BspANI | GGCC | 2 cut(s) | 156, 486 |
| BspOI | GCTAGC | 1 cut(s) | 284 |
| BsrI | ACTGG | 1 cut(s) | 302 |
| BssECI | CCNNGG | 1 cut(s) | 368 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 364 |
| BstC8I | GCNNGC | 1 cut(s) | 282 |
| BstDEI | CTNAG | 2 cut(s) | 331, 377 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstMAI | GTCTC | 1 cut(s) | 288 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 153, 364, 373 |
| BstNSI | RCATGY | 1 cut(s) | 308 |
| BstV1I | GCAGC | 2 cut(s) | 385, 473 |
| BstV2I | GAAGAC | 1 cut(s) | 423 |
| BsuRI | GGCC | 2 cut(s) | 156, 486 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 1 cut(s) | 282 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| Csp6I | GTAC | 1 cut(s) | 200 |
| CviAII | CATG | 3 cut(s) | 285, 305, 561 |
| CviJI | RGCY | 9 cut(s) | 58, 68, 147, 156, 272, 280, 376, 486, 504 |
| CviKI_1 | RGCY | 9 cut(s) | 58, 68, 147, 156, 272, 280, 376, 486, 504 |
| CviQI | GTAC | 1 cut(s) | 200 |
| DdeI | CTNAG | 2 cut(s) | 331, 377 |
| EaeI | YGGCCR | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco32I | GATATC | 1 cut(s) | 411 |
| Eco57I | CTGAAG | 1 cut(s) | 53 |
| EcoRV | GATATC | 1 cut(s) | 411 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EcoT22I | ATGCAT | 1 cut(s) | 423 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| FaeI | CATG | 3 cut(s) | 288, 308, 564 |
| FaqI | GGGAC | 1 cut(s) | 32 |
| FatI | CATG | 3 cut(s) | 284, 304, 560 |
| FauI | CCCGC | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 3 cut(s) | 356, 374, 462 |
| FokI | GGATG | 1 cut(s) | 81 |
| Fsp4HI | GCNGC | 3 cut(s) | 356, 374, 462 |
| FspBI | CTAG | 2 cut(s) | 60, 281 |
| GluI | GCNGC | 3 cut(s) | 356, 374, 462 |
| HaeIII | GGCC | 2 cut(s) | 156, 486 |
| Hin1II | CATG | 3 cut(s) | 288, 308, 564 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HindIII | AAGCTT | 1 cut(s) | 502 |
| HinfI | GANTC | 1 cut(s) | 323 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 401 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 408 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 446 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 401 |
| HpyAV | CCTTC | 3 cut(s) | 31, 108, 443 |
| HpyCH4IV | ACGT | 2 cut(s) | 527, 541 |
| HpyCH4V | TGCA | 2 cut(s) | 75, 421 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 153, 364, 373 |
| HpyF3I | CTNAG | 2 cut(s) | 331, 377 |
| HpySE526I | ACGT | 2 cut(s) | 527, 541 |
| Hsp92II | CATG | 3 cut(s) | 288, 308, 564 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 2 cut(s) | 167, 283 |
| Lsp1109I | GCAGC | 2 cut(s) | 385, 473 |
| LweI | GCATC | 2 cut(s) | 103, 408 |
| MaeI | CTAG | 2 cut(s) | 60, 281 |
| MaeII | ACGT | 2 cut(s) | 527, 541 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MboII | GAAGA | 4 cut(s) | 46, 318, 338, 423 |
| MluCI | AATT | 4 cut(s) | 88, 220, 394, 518 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 5 cut(s) | 164, 185, 244, 310, 384 |
| Mph1103I | ATGCAT | 1 cut(s) | 423 |
| MseI | TTAA | 4 cut(s) | 87, 117, 225, 507 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 153, 364, 373 |
| NheI | GCTAGC | 1 cut(s) | 280 |
| NlaIII | CATG | 3 cut(s) | 288, 308, 564 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| NsiI | ATGCAT | 1 cut(s) | 423 |
| NspI | RCATGY | 1 cut(s) | 308 |
| PciI | ACATGT | 1 cut(s) | 304 |
| PfeI | GAWTC | 1 cut(s) | 323 |
| PkrI | GCNGC | 3 cut(s) | 357, 375, 463 |
| PscI | ACATGT | 1 cut(s) | 304 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| RsaI | GTAC | 1 cut(s) | 201 |
| RsaNI | GTAC | 1 cut(s) | 200 |
| SaqAI | TTAA | 4 cut(s) | 87, 117, 225, 507 |
| SatI | GCNGC | 3 cut(s) | 356, 374, 462 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| ScaI | AGTACT | 1 cut(s) | 201 |
| SfaNI | GCATC | 2 cut(s) | 103, 408 |
| Sse9I | AATT | 4 cut(s) | 88, 220, 394, 518 |
| SsiI | CCGC | 2 cut(s) | 161, 356 |
| SspMI | CTAG | 2 cut(s) | 60, 281 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaiI | ACGT | 2 cut(s) | 530, 544 |
| TaqII | GACCGA | 1 cut(s) | 417 |
| TasI | AATT | 4 cut(s) | 88, 220, 394, 518 |
| TatI | WGTACW | 1 cut(s) | 199 |
| TauI | GCSGC | 1 cut(s) | 358 |
| TfiI | GAWTC | 1 cut(s) | 323 |
| Tru1I | TTAA | 4 cut(s) | 87, 117, 225, 507 |
| Tru9I | TTAA | 4 cut(s) | 87, 117, 225, 507 |
| TscAI | CASTG | 1 cut(s) | 133 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| TseI | GCWGC | 2 cut(s) | 373, 461 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 2 cut(s) | 17, 90 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 1 cut(s) | 133 |
| XapI | RAATTY | 1 cut(s) | 518 |
| XceI | RCATGY | 1 cut(s) | 308 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 164 |
| XspI | CTAG | 2 cut(s) | 60, 281 |
| ZrmI | AGTACT | 1 cut(s) | 201 |
| Zsp2I | ATGCAT | 1 cut(s) | 423 |